Wall clock time and date at job start Mon Mar 8 2021 07:29:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.33343 * 125.94686 * 2 1 4 4 C 1.50695 * 122.70290 * 359.97438 * 3 2 1 5 5 O 1.42907 * 109.47254 * 329.99520 * 4 3 2 6 6 Si 1.86304 * 109.47013 * 209.99888 * 4 3 2 7 7 H 1.48501 * 109.47130 * 59.99896 * 6 4 3 8 8 H 1.48500 * 109.47074 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.46941 * 299.99753 * 6 4 3 10 10 N 1.32090 * 114.58957 * 179.97438 * 3 2 1 11 11 C 1.29760 * 116.85499 * 359.97438 * 10 3 2 12 12 S 1.76206 * 124.95423 * 179.97438 * 11 10 3 13 13 C 1.81000 * 99.99929 * 180.02562 * 12 11 10 14 14 C 1.52999 * 109.46638 * 179.97438 * 13 12 11 15 15 Si 1.86300 * 109.46700 * 179.97438 * 14 13 12 16 16 C 1.86299 * 109.47217 * 60.00408 * 15 14 13 17 17 C 1.86303 * 109.47161 * 179.97438 * 15 14 13 18 18 C 1.86296 * 109.47655 * 300.00316 * 15 14 13 19 19 S 1.70967 * 110.09506 * 0.24553 * 11 10 3 20 20 H 1.08998 * 109.47076 * 90.00247 * 1 2 3 21 21 H 1.09004 * 109.46856 * 209.99540 * 1 2 3 22 22 H 1.08997 * 109.47721 * 330.00111 * 1 2 3 23 23 H 1.08999 * 109.47539 * 89.99436 * 4 3 2 24 24 H 0.96693 * 113.99936 * 300.00614 * 5 4 3 25 25 H 1.09000 * 109.47216 * 300.00172 * 13 12 11 26 26 H 1.09001 * 109.46620 * 60.00275 * 13 12 11 27 27 H 1.09000 * 109.47486 * 300.00041 * 14 13 12 28 28 H 1.09001 * 109.47362 * 60.00764 * 14 13 12 29 29 H 1.09000 * 109.47172 * 59.99811 * 16 15 14 30 30 H 1.09002 * 109.47329 * 179.97438 * 16 15 14 31 31 H 1.09001 * 109.47058 * 299.99968 * 16 15 14 32 32 H 1.09004 * 109.46801 * 60.00242 * 17 15 14 33 33 H 1.09002 * 109.47702 * 180.02562 * 17 15 14 34 34 H 1.09000 * 109.47332 * 300.00252 * 17 15 14 35 35 H 1.09001 * 109.47296 * 59.99624 * 18 15 14 36 36 H 1.08992 * 109.47275 * 180.02562 * 18 15 14 37 37 H 1.09004 * 109.46880 * 300.00109 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2897 1.0795 0.0000 4 6 1.7411 2.4830 -0.0006 5 8 0.4812 2.5018 -0.6748 6 14 2.9321 3.6150 -0.8787 7 1 3.1129 3.1536 -2.2785 8 1 2.3918 4.9982 -0.8787 9 1 4.2413 3.5956 -0.1780 10 7 3.5847 0.8194 0.0005 11 6 3.9314 -0.4310 0.0015 12 16 5.5929 -1.0180 0.0017 13 6 5.2955 -2.8034 0.0024 14 6 6.6346 -3.5433 0.0021 15 14 6.3285 -5.3810 0.0036 16 6 5.3593 -5.8504 -1.5166 17 6 7.9591 -6.2822 0.0024 18 6 5.3612 -5.8483 1.5256 19 16 2.5412 -1.4261 -0.0051 20 1 -0.3633 0.0000 -1.0276 21 1 -0.3633 -0.8901 0.5138 22 1 -0.3634 0.8899 0.5138 23 1 1.6083 2.8217 1.0269 24 1 0.5238 2.2117 -1.5962 25 1 4.7289 -3.0770 0.8925 26 1 4.7290 -3.0776 -0.8875 27 1 7.2008 -3.2696 -0.8882 28 1 7.2015 -3.2692 0.8918 29 1 5.9253 -5.5771 -2.4071 30 1 5.1806 -6.9257 -1.5160 31 1 4.4053 -5.3232 -1.5164 32 1 8.5266 -6.0076 0.8916 33 1 7.7801 -7.3574 0.0028 34 1 8.5247 -6.0088 -0.8884 35 1 4.4071 -5.3211 1.5259 36 1 5.1825 -6.9235 1.5266 37 1 5.9283 -5.5737 2.4151 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_13466070_15704122.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:29:48 Heat of formation + Delta-G solvation = -40.269939 kcal Electronic energy + Delta-G solvation = -16738.776028 eV Core-core repulsion = 14085.381084 eV Total energy + Delta-G solvation = -2653.394944 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 291.065 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.16916 -37.73307 -33.86687 -33.42520 -29.93800 -29.35751 -28.30199 -28.28756 -26.33600 -25.70010 -23.91424 -20.60465 -19.53268 -18.22556 -17.70622 -16.81694 -16.24204 -16.00652 -15.92458 -15.18271 -14.90429 -14.36873 -14.12742 -13.95155 -13.89230 -13.83366 -13.69921 -13.51692 -13.40643 -13.11870 -13.11479 -12.97219 -12.87084 -12.52297 -12.41380 -12.30636 -11.99561 -11.88397 -10.91293 -10.74009 -10.69229 -10.67885 -10.51174 -10.44936 -10.12006 -8.65160 -0.55763 -0.09499 0.03877 0.50067 1.04181 1.27885 1.41523 1.52762 1.55539 1.93406 1.98868 2.02132 2.02247 2.71190 3.15208 3.42503 3.88533 3.89506 3.94419 4.16205 4.44548 4.48064 4.70942 4.77526 4.80365 4.84204 4.84537 4.88224 4.88467 4.89575 4.89995 4.96846 5.26965 5.27217 5.60605 5.68437 5.69780 6.33861 6.61573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.195 4.195 3 C 0.011 3.989 4 C -0.031 4.031 5 O -0.533 6.533 6 Si 1.000 3.000 7 H -0.273 1.273 8 H -0.260 1.260 9 H -0.277 1.277 10 N -0.485 5.485 11 C -0.003 4.003 12 S -0.036 6.036 13 C -0.111 4.111 14 C -0.413 4.413 15 Si 1.104 2.896 16 C -0.470 4.470 17 C -0.469 4.469 18 C -0.470 4.470 19 S 0.170 5.830 20 H 0.093 0.907 21 H 0.074 0.926 22 H 0.098 0.902 23 H 0.136 0.864 24 H 0.389 0.611 25 H 0.107 0.893 26 H 0.107 0.893 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.813 -5.245 -0.535 5.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.320 4.320 3 C -0.122 4.122 4 C -0.146 4.146 5 O -0.339 6.339 6 Si 0.825 3.175 7 H -0.197 1.197 8 H -0.184 1.184 9 H -0.202 1.202 10 N -0.205 5.205 11 C -0.388 4.388 12 S 0.196 5.804 13 C -0.259 4.259 14 C -0.497 4.497 15 Si 1.293 2.707 16 C -0.576 4.576 17 C -0.576 4.576 18 C -0.576 4.576 19 S 0.422 5.578 20 H 0.112 0.888 21 H 0.092 0.908 22 H 0.116 0.884 23 H 0.153 0.847 24 H 0.239 0.761 25 H 0.125 0.875 26 H 0.126 0.874 27 H 0.111 0.889 28 H 0.111 0.889 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.074 -4.549 -0.401 4.567 hybrid contribution -1.139 -0.068 -0.225 1.163 sum -1.213 -4.617 -0.625 4.814 Atomic orbital electron populations 1.20467 0.84096 1.04281 1.04403 1.25999 1.03139 0.93400 1.09432 1.20895 0.86983 0.98872 1.05491 1.24264 0.92533 0.93606 1.04156 1.86500 1.27800 1.89602 1.30000 0.84895 0.76856 0.77277 0.78466 1.19737 1.18444 1.20206 1.66256 1.17752 1.18133 1.18377 1.28588 1.05171 0.95893 1.09103 1.86155 0.97102 1.06246 1.90872 1.23770 1.03916 0.90679 1.07572 1.26396 0.96699 1.19787 1.06788 0.77826 0.65328 0.61962 0.65559 1.26373 1.09306 1.05798 1.16133 1.26342 1.18009 1.08652 1.04550 1.26376 1.09288 1.05786 1.16188 1.83719 0.95270 1.10025 1.68815 0.88837 0.90766 0.88402 0.84682 0.76134 0.87483 0.87450 0.88878 0.88900 0.91173 0.91093 0.90977 0.91231 0.91134 0.91221 0.90995 0.91093 0.91194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 0.24 8.95 71.23 0.64 0.88 16 2 C -0.19 -0.40 6.50 24.58 0.16 -0.24 16 3 C 0.01 0.06 5.92 41.41 0.25 0.30 16 4 C -0.03 -0.06 2.82 71.23 0.20 0.14 16 5 O -0.53 0.69 9.90 -148.98 -1.47 -0.79 16 6 Si 1.00 5.00 27.37 68.60 1.88 6.87 16 7 H -0.27 -1.93 7.11 99.48 0.71 -1.22 16 8 H -0.26 -1.31 7.11 99.48 0.71 -0.61 16 9 H -0.28 -2.92 7.11 99.48 0.71 -2.21 16 10 N -0.48 -4.91 8.95 -188.53 -1.69 -6.59 16 11 C 0.00 -0.02 7.59 130.55 0.99 0.97 16 12 S -0.04 -0.16 22.31 -56.49 -1.26 -1.42 16 13 C -0.11 0.40 4.00 71.98 0.29 0.69 16 14 C -0.41 2.60 4.45 71.98 0.32 2.92 16 15 Si 1.10 -9.90 12.19 68.60 0.84 -9.06 16 16 C -0.47 3.09 8.65 113.37 0.98 4.08 16 17 C -0.47 2.65 8.65 113.37 0.98 3.63 16 18 C -0.47 3.04 8.65 113.37 0.98 4.03 16 19 S 0.17 0.19 21.54 -56.49 -1.22 -1.03 16 20 H 0.09 -0.57 8.14 -2.39 -0.02 -0.59 16 21 H 0.07 -0.35 8.14 -2.38 -0.02 -0.37 16 22 H 0.10 -0.24 6.62 -2.39 -0.02 -0.26 16 23 H 0.14 -0.02 7.96 -2.39 -0.02 -0.03 16 24 H 0.39 -2.67 8.68 -74.06 -0.64 -3.31 16 25 H 0.11 -0.62 7.63 -2.39 -0.02 -0.64 16 26 H 0.11 -0.64 7.62 -2.39 -0.02 -0.66 16 27 H 0.09 -0.58 7.96 -2.39 -0.02 -0.60 16 28 H 0.09 -0.57 7.96 -2.39 -0.02 -0.59 16 29 H 0.07 -0.42 7.96 -2.39 -0.02 -0.44 16 30 H 0.07 -0.42 7.96 -2.39 -0.02 -0.44 16 31 H 0.07 -0.50 7.79 -2.39 -0.02 -0.52 16 32 H 0.07 -0.36 7.96 -2.38 -0.02 -0.38 16 33 H 0.07 -0.36 7.96 -2.39 -0.02 -0.38 16 34 H 0.07 -0.36 7.96 -2.39 -0.02 -0.38 16 35 H 0.07 -0.49 7.79 -2.39 -0.02 -0.51 16 36 H 0.07 -0.42 7.96 -2.39 -0.02 -0.43 16 37 H 0.07 -0.41 7.96 -2.38 -0.02 -0.43 16 Total: 0.00 -13.66 331.80 4.02 -9.64 By element: Atomic # 1 Polarization: -16.17 SS G_CDS: 1.16 Total: -15.01 kcal Atomic # 6 Polarization: 11.60 SS G_CDS: 5.79 Total: 17.39 kcal Atomic # 7 Polarization: -4.91 SS G_CDS: -1.69 Total: -6.59 kcal Atomic # 8 Polarization: 0.69 SS G_CDS: -1.47 Total: -0.79 kcal Atomic # 14 Polarization: -4.90 SS G_CDS: 2.71 Total: -2.19 kcal Atomic # 16 Polarization: 0.03 SS G_CDS: -2.48 Total: -2.45 kcal Total: -13.66 4.02 -9.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_13466070_15704122.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.631 kcal (2) G-P(sol) polarization free energy of solvation -13.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds