Wall clock time and date at job start Mon Mar 8 2021 07:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86298 * 109.46840 * 2 1 4 4 C 1.50703 * 109.46700 * 119.99853 * 2 1 3 5 5 C 1.38599 * 120.72422 * 65.00284 * 4 2 1 6 6 N 1.32271 * 119.20254 * 180.02562 * 5 4 2 7 7 C 1.32494 * 120.73916 * 0.02562 * 6 5 4 8 8 N 1.38405 * 119.21863 * 179.72151 * 7 6 5 9 9 C 1.46507 * 120.00082 * 180.02562 * 8 7 6 10 10 H 1.09002 * 109.46933 * 34.99440 * 9 8 7 11 11 C 1.52999 * 109.47293 * 155.00050 * 9 8 7 12 12 C 1.52999 * 109.46996 * 179.97438 * 11 9 8 13 13 C 1.52996 * 109.47096 * 299.99634 * 12 11 9 14 14 H 1.09004 * 109.47417 * 300.00745 * 13 12 11 15 15 C 1.50698 * 109.47192 * 180.02562 * 13 12 11 16 16 N 1.29908 * 124.84808 * 120.00216 * 15 13 12 17 17 C 1.36067 * 108.79881 * 179.97438 * 16 15 13 18 18 C 1.39544 * 133.81145 * 179.97438 * 17 16 15 19 19 C 1.37729 * 119.72905 * 180.02562 * 18 17 16 20 20 C 1.38682 * 120.42185 * 359.92636 * 19 18 17 21 21 C 1.37950 * 120.47194 * 0.06097 * 20 19 18 22 22 C 1.38622 * 119.87852 * 359.97438 * 21 20 19 23 23 O 1.34225 * 124.85087 * 299.69603 * 15 13 12 24 24 C 1.53003 * 109.47221 * 60.00176 * 13 12 11 25 25 C 1.52999 * 109.46942 * 299.99918 * 24 13 12 26 26 N 1.32501 * 121.56413 * 0.02562 * 7 6 5 27 27 C 1.32274 * 120.74204 * 359.97438 * 26 7 6 28 28 H 0.96694 * 114.00135 * 60.00146 * 1 2 3 29 29 H 1.08995 * 109.47344 * 239.99678 * 2 1 3 30 30 H 1.48504 * 110.00103 * 60.00037 * 3 2 1 31 31 H 1.48501 * 109.99969 * 181.31538 * 3 2 1 32 32 H 1.08004 * 120.40191 * 0.04297 * 5 4 2 33 33 H 0.96998 * 119.99930 * 359.97438 * 8 7 6 34 34 H 1.08997 * 109.46690 * 299.99891 * 11 9 8 35 35 H 1.08998 * 109.47048 * 59.99380 * 11 9 8 36 36 H 1.08995 * 109.47209 * 59.99820 * 12 11 9 37 37 H 1.09004 * 109.46475 * 179.97438 * 12 11 9 38 38 H 1.07998 * 120.13766 * 359.97438 * 18 17 16 39 39 H 1.07999 * 119.78745 * 179.97438 * 19 18 17 40 40 H 1.07998 * 119.75986 * 180.02562 * 20 19 18 41 41 H 1.08002 * 120.05972 * 179.97438 * 21 20 19 42 42 H 1.08995 * 109.47021 * 59.99852 * 24 13 12 43 43 H 1.08997 * 109.47011 * 179.97438 * 24 13 12 44 44 H 1.08998 * 109.47700 * 299.99825 * 25 24 13 45 45 H 1.09003 * 109.47051 * 179.97438 * 25 24 13 46 46 H 1.07993 * 120.40089 * 180.02562 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.6926 -2.0633 1.4141 6 7 2.1468 -2.6564 2.5057 7 6 2.8221 -1.9720 3.4172 8 7 3.2779 -2.6230 4.5503 9 6 4.0260 -1.8827 5.5695 10 1 3.6354 -0.8676 5.6412 11 6 3.8767 -2.5835 6.9214 12 6 4.6585 -1.8107 7.9855 13 6 6.1375 -1.7622 7.5970 14 1 6.5277 -2.7774 7.5250 15 6 6.9076 -1.0015 8.6454 16 7 7.8844 -1.4898 9.3491 17 6 8.3422 -0.5251 10.1924 18 6 9.3515 -0.4832 11.1552 19 6 9.5730 0.6778 11.8623 20 6 8.8007 1.8044 11.6223 21 6 7.7999 1.7773 10.6734 22 6 7.5626 0.6171 9.9528 23 8 6.6862 0.2790 8.9815 24 6 6.2869 -1.0614 6.2451 25 6 5.5051 -1.8343 5.1809 26 7 3.0664 -0.6778 3.2726 27 6 2.6402 -0.0245 2.2043 28 1 -0.3933 0.4416 -0.7650 29 1 1.7924 -0.5139 -0.8899 30 1 1.5614 2.4679 1.2085 31 1 3.5345 1.7704 -0.0320 32 1 1.1425 -2.6265 0.6747 33 1 3.1014 -3.5693 4.6701 34 1 2.8229 -2.6184 7.1979 35 1 4.2673 -3.5985 6.8495 36 1 4.2682 -0.7955 8.0574 37 1 4.5516 -2.3097 8.9487 38 1 9.9559 -1.3577 11.3456 39 1 10.3535 0.7111 12.6080 40 1 8.9839 2.7092 12.1828 41 1 7.2022 2.6585 10.4922 42 1 5.8967 -0.0463 6.3169 43 1 7.3406 -1.0265 5.9685 44 1 5.8953 -2.8495 5.1090 45 1 5.6112 -1.3348 4.2179 46 1 2.8427 1.0303 2.0919 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_13774300_12175864.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:03:58 Heat of formation + Delta-G solvation = 66.130639 kcal Electronic energy + Delta-G solvation = -29909.924280 eV Core-core repulsion = 25767.653435 eV Total energy + Delta-G solvation = -4142.270845 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 353.153 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -44.23729 -42.10056 -40.18922 -38.91251 -37.98958 -36.47174 -35.60553 -34.70927 -33.18405 -32.03315 -31.64399 -31.37905 -29.52179 -26.66111 -25.93764 -24.76636 -24.11571 -23.95230 -23.14364 -22.78065 -22.11958 -21.18003 -19.41612 -18.85436 -18.73360 -18.37707 -18.19355 -17.63952 -17.14564 -16.71324 -16.45602 -16.19899 -15.82490 -15.54220 -15.39781 -15.30181 -15.16792 -15.04197 -14.79627 -14.72938 -14.14975 -14.03634 -13.95086 -13.46414 -13.40585 -13.25052 -13.16413 -12.67864 -12.50189 -12.47215 -12.38994 -12.29098 -12.21186 -11.92522 -11.82766 -11.72925 -11.47330 -11.42210 -11.16287 -10.57995 -9.96315 -9.79390 -9.42829 -9.10619 -5.07308 -0.30423 0.05490 0.16568 0.23941 1.20079 1.42496 1.48040 1.56617 1.76871 1.87514 2.65411 2.66726 2.79309 3.09179 3.36295 3.42348 3.48940 3.53135 3.57490 3.64411 3.78519 3.82346 3.88063 3.97019 4.00011 4.09569 4.13298 4.17083 4.20677 4.23721 4.27970 4.29049 4.39595 4.45806 4.52004 4.63461 4.75521 4.83080 4.84463 4.88235 4.93895 4.97635 5.04947 5.10155 5.15277 5.22574 5.29573 5.32532 5.35856 5.64521 5.77318 6.00103 6.39782 6.57270 6.65217 7.29317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.548 6.548 2 C -0.050 4.050 3 Si 0.680 3.320 4 C -0.249 4.249 5 C 0.227 3.773 6 N -0.567 5.567 7 C 0.569 3.431 8 N -0.691 5.691 9 C 0.158 3.842 10 H 0.095 0.905 11 C -0.125 4.125 12 C -0.110 4.110 13 C 0.003 3.997 14 H 0.119 0.881 15 C 0.258 3.742 16 N -0.478 5.478 17 C 0.020 3.980 18 C -0.062 4.062 19 C -0.119 4.119 20 C -0.093 4.093 21 C -0.093 4.093 22 C 0.007 3.993 23 O -0.210 6.210 24 C -0.112 4.112 25 C -0.126 4.126 26 N -0.560 5.560 27 C 0.194 3.806 28 H 0.383 0.617 29 H 0.076 0.924 30 H -0.249 1.249 31 H -0.253 1.253 32 H 0.172 0.828 33 H 0.415 0.585 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.137 0.863 39 H 0.139 0.861 40 H 0.142 0.858 41 H 0.136 0.864 42 H 0.077 0.923 43 H 0.075 0.925 44 H 0.070 0.930 45 H 0.075 0.925 46 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.705 2.364 -2.819 3.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.354 6.354 2 C -0.162 4.162 3 Si 0.581 3.419 4 C -0.257 4.257 5 C 0.058 3.942 6 N -0.289 5.289 7 C 0.212 3.788 8 N -0.327 5.327 9 C 0.052 3.948 10 H 0.113 0.887 11 C -0.163 4.163 12 C -0.149 4.149 13 C -0.017 4.017 14 H 0.137 0.863 15 C 0.047 3.953 16 N -0.207 5.207 17 C -0.091 4.091 18 C -0.081 4.081 19 C -0.138 4.138 20 C -0.111 4.111 21 C -0.112 4.112 22 C -0.044 4.044 23 O -0.101 6.101 24 C -0.150 4.150 25 C -0.165 4.165 26 N -0.282 5.282 27 C 0.027 3.973 28 H 0.231 0.769 29 H 0.094 0.906 30 H -0.173 1.173 31 H -0.177 1.177 32 H 0.189 0.811 33 H 0.253 0.747 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.155 0.845 39 H 0.157 0.843 40 H 0.160 0.840 41 H 0.154 0.846 42 H 0.095 0.905 43 H 0.094 0.906 44 H 0.088 0.912 45 H 0.094 0.906 46 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 0.565 1.656 -0.863 1.951 hybrid contribution -0.521 0.230 -0.515 0.768 sum 0.044 1.886 -1.378 2.336 Atomic orbital electron populations 1.86493 1.17293 1.81821 1.49819 1.24298 0.85599 1.09950 0.96386 0.95067 0.80961 0.78177 0.87731 1.20717 1.07972 0.97078 0.99911 1.22825 0.88830 0.90858 0.91639 1.67998 1.16584 1.39936 1.04350 1.19371 0.86998 0.85422 0.87008 1.44231 1.58546 1.12259 1.17642 1.21057 0.91030 0.97007 0.85665 0.88664 1.21795 1.01529 0.99879 0.93136 1.21560 0.91945 1.02282 0.99130 1.20044 0.94065 0.98387 0.89174 0.86256 1.26379 0.93222 0.79505 0.96240 1.70667 1.11175 1.30497 1.08360 1.19914 0.99798 0.89834 0.99598 1.20374 0.95306 0.99099 0.93286 1.21114 1.00351 0.92247 1.00111 1.21083 0.94178 0.99181 0.96629 1.19933 1.00055 0.94894 0.96316 1.20364 0.92903 0.98001 0.93083 1.84482 1.50495 1.29347 1.45812 1.21585 1.01535 0.99961 0.91956 1.21933 0.94384 1.01181 0.99032 1.67909 1.27215 1.08406 1.24679 1.22612 0.89053 0.98859 0.86821 0.76868 0.90617 1.17321 1.17724 0.81090 0.74728 0.90198 0.90522 0.90391 0.90242 0.84543 0.84312 0.84016 0.84608 0.90467 0.90632 0.91153 0.90629 0.82611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.43 12.82 -35.23 -0.45 -0.02 16 2 C -0.05 0.05 2.82 36.01 0.10 0.16 16 3 Si 0.68 -1.31 29.92 -169.99 -5.09 -6.40 16 4 C -0.25 -0.47 5.40 -104.35 -0.56 -1.04 16 5 C 0.23 0.51 10.99 -17.23 -0.19 0.32 16 6 N -0.57 -2.09 10.46 -13.93 -0.15 -2.23 16 7 C 0.57 1.95 8.40 -322.80 -2.71 -0.76 16 8 N -0.69 -0.53 5.22 -55.79 -0.29 -0.82 16 9 C 0.16 -0.07 2.45 -67.92 -0.17 -0.24 16 10 H 0.10 0.10 7.50 -51.93 -0.39 -0.29 16 11 C -0.13 0.27 5.39 -26.73 -0.14 0.12 16 12 C -0.11 0.15 5.19 -26.73 -0.14 0.01 16 13 C 0.00 0.00 2.66 -91.77 -0.24 -0.24 16 14 H 0.12 -0.11 8.14 -51.93 -0.42 -0.53 16 15 C 0.26 0.79 6.74 -13.09 -0.09 0.70 16 16 N -0.48 -2.40 11.34 -8.70 -0.10 -2.49 16 17 C 0.02 0.09 7.24 -84.71 -0.61 -0.52 16 18 C -0.06 -0.14 10.10 -39.28 -0.40 -0.54 16 19 C -0.12 -0.02 10.02 -39.60 -0.40 -0.42 16 20 C -0.09 0.01 10.03 -39.52 -0.40 -0.39 16 21 C -0.09 -0.14 10.06 -39.54 -0.40 -0.53 16 22 C 0.01 0.03 7.43 -38.64 -0.29 -0.26 16 23 O -0.21 -0.82 10.77 3.61 0.04 -0.78 16 24 C -0.11 0.06 5.19 -26.73 -0.14 -0.08 16 25 C -0.13 0.07 5.51 -26.73 -0.15 -0.08 16 26 N -0.56 -2.14 9.20 -13.93 -0.13 -2.27 16 27 C 0.19 0.57 9.92 -17.22 -0.17 0.39 16 28 H 0.38 -2.21 8.74 45.56 0.40 -1.81 16 29 H 0.08 -0.22 7.96 -51.93 -0.41 -0.64 16 30 H -0.25 -0.30 7.06 56.52 0.40 0.10 16 31 H -0.25 -0.14 7.11 56.52 0.40 0.27 16 32 H 0.17 -0.04 8.06 -52.48 -0.42 -0.46 16 33 H 0.42 -0.24 8.72 -40.82 -0.36 -0.59 16 34 H 0.08 -0.17 8.14 -51.93 -0.42 -0.59 16 35 H 0.08 -0.23 8.14 -51.93 -0.42 -0.65 16 36 H 0.08 -0.07 8.14 -51.93 -0.42 -0.49 16 37 H 0.08 -0.10 8.14 -51.93 -0.42 -0.53 16 38 H 0.14 0.11 8.06 -52.49 -0.42 -0.31 16 39 H 0.14 -0.34 8.06 -52.49 -0.42 -0.76 16 40 H 0.14 -0.41 8.06 -52.49 -0.42 -0.83 16 41 H 0.14 -0.07 8.06 -52.49 -0.42 -0.49 16 42 H 0.08 0.00 8.14 -51.93 -0.42 -0.42 16 43 H 0.07 -0.01 8.14 -51.93 -0.42 -0.43 16 44 H 0.07 -0.07 8.14 -51.93 -0.42 -0.50 16 45 H 0.08 0.09 8.14 -51.93 -0.42 -0.34 16 46 H 0.16 0.26 5.04 -52.49 -0.26 0.00 16 LS Contribution 380.94 15.07 5.74 5.74 Total: 0.00 -9.33 380.94 -13.66 -22.98 By element: Atomic # 1 Polarization: -4.16 SS G_CDS: -6.14 Total: -10.31 kcal Atomic # 6 Polarization: 3.69 SS G_CDS: -7.09 Total: -3.40 kcal Atomic # 7 Polarization: -7.16 SS G_CDS: -0.66 Total: -7.82 kcal Atomic # 8 Polarization: -0.39 SS G_CDS: -0.41 Total: -0.80 kcal Atomic # 14 Polarization: -1.31 SS G_CDS: -5.09 Total: -6.40 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -9.33 -13.66 -22.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_13774300_12175864.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.113 kcal (2) G-P(sol) polarization free energy of solvation -9.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds