Wall clock time and date at job start Mon Mar 8 2021 07:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86298 * 109.46840 * 2 1 4 4 C 1.50703 * 109.46700 * 119.99853 * 2 1 3 5 5 C 1.38599 * 120.72422 * 65.00284 * 4 2 1 6 6 N 1.32271 * 119.20254 * 180.02562 * 5 4 2 7 7 C 1.32494 * 120.73916 * 0.02562 * 6 5 4 8 8 N 1.38405 * 119.21863 * 179.72151 * 7 6 5 9 9 C 1.46507 * 120.00082 * 180.02562 * 8 7 6 10 10 H 1.09002 * 109.46933 * 34.99440 * 9 8 7 11 11 C 1.52999 * 109.47293 * 155.00050 * 9 8 7 12 12 C 1.52999 * 109.46996 * 179.97438 * 11 9 8 13 13 C 1.52996 * 109.47096 * 299.99634 * 12 11 9 14 14 H 1.09004 * 109.47417 * 300.00745 * 13 12 11 15 15 C 1.50698 * 109.47192 * 180.02562 * 13 12 11 16 16 N 1.29908 * 124.84808 * 120.00216 * 15 13 12 17 17 C 1.36067 * 108.79881 * 179.97438 * 16 15 13 18 18 C 1.39544 * 133.81145 * 179.97438 * 17 16 15 19 19 C 1.37729 * 119.72905 * 180.02562 * 18 17 16 20 20 C 1.38682 * 120.42185 * 359.92636 * 19 18 17 21 21 C 1.37950 * 120.47194 * 0.06097 * 20 19 18 22 22 C 1.38622 * 119.87852 * 359.97438 * 21 20 19 23 23 O 1.34225 * 124.85087 * 299.69603 * 15 13 12 24 24 C 1.53003 * 109.47221 * 60.00176 * 13 12 11 25 25 C 1.52999 * 109.46942 * 299.99918 * 24 13 12 26 26 N 1.32501 * 121.56413 * 0.02562 * 7 6 5 27 27 C 1.32274 * 120.74204 * 359.97438 * 26 7 6 28 28 H 0.96694 * 114.00135 * 60.00146 * 1 2 3 29 29 H 1.08995 * 109.47344 * 239.99678 * 2 1 3 30 30 H 1.48504 * 110.00103 * 60.00037 * 3 2 1 31 31 H 1.48501 * 109.99969 * 181.31538 * 3 2 1 32 32 H 1.08004 * 120.40191 * 0.04297 * 5 4 2 33 33 H 0.96998 * 119.99930 * 359.97438 * 8 7 6 34 34 H 1.08997 * 109.46690 * 299.99891 * 11 9 8 35 35 H 1.08998 * 109.47048 * 59.99380 * 11 9 8 36 36 H 1.08995 * 109.47209 * 59.99820 * 12 11 9 37 37 H 1.09004 * 109.46475 * 179.97438 * 12 11 9 38 38 H 1.07998 * 120.13766 * 359.97438 * 18 17 16 39 39 H 1.07999 * 119.78745 * 179.97438 * 19 18 17 40 40 H 1.07998 * 119.75986 * 180.02562 * 20 19 18 41 41 H 1.08002 * 120.05972 * 179.97438 * 21 20 19 42 42 H 1.08995 * 109.47021 * 59.99852 * 24 13 12 43 43 H 1.08997 * 109.47011 * 179.97438 * 24 13 12 44 44 H 1.08998 * 109.47700 * 299.99825 * 25 24 13 45 45 H 1.09003 * 109.47051 * 179.97438 * 25 24 13 46 46 H 1.07993 * 120.40089 * 180.02562 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.6926 -2.0633 1.4141 6 7 2.1468 -2.6564 2.5057 7 6 2.8221 -1.9720 3.4172 8 7 3.2779 -2.6230 4.5503 9 6 4.0260 -1.8827 5.5695 10 1 3.6354 -0.8676 5.6412 11 6 3.8767 -2.5835 6.9214 12 6 4.6585 -1.8107 7.9855 13 6 6.1375 -1.7622 7.5970 14 1 6.5277 -2.7774 7.5250 15 6 6.9076 -1.0015 8.6454 16 7 7.8844 -1.4898 9.3491 17 6 8.3422 -0.5251 10.1924 18 6 9.3515 -0.4832 11.1552 19 6 9.5730 0.6778 11.8623 20 6 8.8007 1.8044 11.6223 21 6 7.7999 1.7773 10.6734 22 6 7.5626 0.6171 9.9528 23 8 6.6862 0.2790 8.9815 24 6 6.2869 -1.0614 6.2451 25 6 5.5051 -1.8343 5.1809 26 7 3.0664 -0.6778 3.2726 27 6 2.6402 -0.0245 2.2043 28 1 -0.3933 0.4416 -0.7650 29 1 1.7924 -0.5139 -0.8899 30 1 1.5614 2.4679 1.2085 31 1 3.5345 1.7704 -0.0320 32 1 1.1425 -2.6265 0.6747 33 1 3.1014 -3.5693 4.6701 34 1 2.8229 -2.6184 7.1979 35 1 4.2673 -3.5985 6.8495 36 1 4.2682 -0.7955 8.0574 37 1 4.5516 -2.3097 8.9487 38 1 9.9559 -1.3577 11.3456 39 1 10.3535 0.7111 12.6080 40 1 8.9839 2.7092 12.1828 41 1 7.2022 2.6585 10.4922 42 1 5.8967 -0.0463 6.3169 43 1 7.3406 -1.0265 5.9685 44 1 5.8953 -2.8495 5.1090 45 1 5.6112 -1.3348 4.2179 46 1 2.8427 1.0303 2.0919 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_13774300_12175864.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:03:57 Heat of formation + Delta-G solvation = 66.946369 kcal Electronic energy + Delta-G solvation = -29909.888907 eV Core-core repulsion = 25767.653435 eV Total energy + Delta-G solvation = -4142.235473 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 353.153 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -44.41136 -42.24189 -40.20440 -38.98509 -37.92039 -36.53530 -35.77876 -34.88755 -33.24819 -32.00379 -31.72718 -31.45216 -29.59180 -26.69444 -26.09068 -24.83820 -24.23892 -23.92643 -23.22816 -22.91192 -22.21421 -21.18350 -19.52669 -18.95017 -18.82869 -18.33101 -18.27599 -17.85608 -17.17348 -16.75051 -16.49219 -16.31882 -15.91083 -15.59454 -15.38266 -15.31641 -15.16376 -15.10125 -14.88071 -14.81280 -14.17853 -14.06030 -13.96260 -13.57286 -13.40196 -13.23234 -13.17645 -12.73354 -12.61635 -12.49112 -12.46197 -12.29307 -12.27107 -12.02439 -11.96452 -11.75145 -11.61446 -11.47928 -11.19559 -10.58011 -10.03578 -9.90503 -9.55798 -9.20233 -4.95944 -0.41848 -0.11530 0.01166 0.12426 1.25952 1.31167 1.35753 1.65242 1.69595 1.96243 2.55699 2.56303 2.64710 2.95106 3.38056 3.42148 3.46281 3.47915 3.51266 3.57987 3.75852 3.80463 3.88989 4.00761 4.01221 4.06875 4.10384 4.17685 4.21103 4.22555 4.25997 4.32610 4.36815 4.49667 4.54950 4.66583 4.68239 4.82221 4.83394 4.91365 4.95584 4.98304 4.99671 5.08029 5.12304 5.15711 5.25170 5.28663 5.30897 5.63004 5.65055 5.90751 6.31396 6.45431 6.96195 7.15099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.565 6.565 2 C -0.052 4.052 3 Si 0.768 3.232 4 C -0.254 4.254 5 C 0.219 3.781 6 N -0.583 5.583 7 C 0.553 3.447 8 N -0.684 5.684 9 C 0.161 3.839 10 H 0.078 0.922 11 C -0.115 4.115 12 C -0.104 4.104 13 C 0.008 3.992 14 H 0.129 0.871 15 C 0.256 3.744 16 N -0.507 5.507 17 C -0.012 4.012 18 C -0.080 4.080 19 C -0.111 4.111 20 C -0.085 4.085 21 C -0.104 4.104 22 C -0.020 4.020 23 O -0.221 6.221 24 C -0.103 4.103 25 C -0.116 4.116 26 N -0.578 5.578 27 C 0.175 3.825 28 H 0.405 0.595 29 H 0.103 0.897 30 H -0.296 1.296 31 H -0.288 1.288 32 H 0.195 0.805 33 H 0.422 0.578 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.070 0.930 37 H 0.082 0.918 38 H 0.143 0.857 39 H 0.170 0.830 40 H 0.176 0.824 41 H 0.152 0.848 42 H 0.068 0.932 43 H 0.071 0.929 44 H 0.080 0.920 45 H 0.057 0.943 46 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.836 2.370 -2.860 3.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.376 6.376 2 C -0.164 4.164 3 Si 0.675 3.325 4 C -0.262 4.262 5 C 0.051 3.949 6 N -0.305 5.305 7 C 0.196 3.804 8 N -0.320 5.320 9 C 0.056 3.944 10 H 0.096 0.904 11 C -0.153 4.153 12 C -0.143 4.143 13 C -0.011 4.011 14 H 0.147 0.853 15 C 0.044 3.956 16 N -0.237 5.237 17 C -0.123 4.123 18 C -0.099 4.099 19 C -0.130 4.130 20 C -0.103 4.103 21 C -0.122 4.122 22 C -0.070 4.070 23 O -0.113 6.113 24 C -0.142 4.142 25 C -0.155 4.155 26 N -0.301 5.301 27 C 0.008 3.992 28 H 0.257 0.743 29 H 0.121 0.879 30 H -0.224 1.224 31 H -0.215 1.215 32 H 0.212 0.788 33 H 0.261 0.739 34 H 0.103 0.897 35 H 0.111 0.889 36 H 0.089 0.911 37 H 0.101 0.899 38 H 0.161 0.839 39 H 0.187 0.813 40 H 0.194 0.806 41 H 0.170 0.830 42 H 0.087 0.913 43 H 0.090 0.910 44 H 0.099 0.901 45 H 0.076 0.924 46 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 0.418 1.656 -0.930 1.945 hybrid contribution -0.440 0.312 -0.441 0.697 sum -0.023 1.969 -1.371 2.399 Atomic orbital electron populations 1.86439 1.17134 1.82396 1.51585 1.24391 0.85844 1.10215 0.95955 0.94187 0.77484 0.75805 0.85052 1.21056 1.07296 0.97243 1.00596 1.23285 0.88641 0.91278 0.91696 1.68040 1.17094 1.40349 1.04973 1.19639 0.87445 0.85540 0.87744 1.44275 1.58132 1.12540 1.17049 1.21033 0.90691 0.96381 0.86288 0.90407 1.21722 1.01763 1.00258 0.91514 1.21510 0.91122 1.02131 0.99538 1.20163 0.94432 0.98307 0.88215 0.85283 1.26933 0.92972 0.79385 0.96269 1.70621 1.12231 1.31405 1.09401 1.20330 1.01073 0.90197 1.00668 1.20676 0.95279 1.00462 0.93492 1.21536 1.00467 0.91356 0.99648 1.21555 0.92801 1.00267 0.95667 1.20341 1.00821 0.94690 0.96378 1.20824 0.93389 0.98940 0.93857 1.84459 1.50872 1.29791 1.46178 1.21485 1.01204 0.99570 0.91972 1.21821 0.94383 1.01406 0.97937 1.67896 1.27938 1.08871 1.25355 1.22844 0.89798 0.99237 0.87329 0.74302 0.87927 1.22385 1.21543 0.78831 0.73943 0.89711 0.88856 0.91090 0.89897 0.83872 0.81259 0.80642 0.83018 0.91321 0.91049 0.90097 0.92391 0.82435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.57 1.52 12.82 -148.98 -1.91 -0.39 16 2 C -0.05 0.15 2.82 71.24 0.20 0.35 16 3 Si 0.77 -2.72 29.92 68.60 2.05 -0.67 16 4 C -0.25 -1.07 5.40 -19.69 -0.11 -1.17 16 5 C 0.22 1.00 10.99 84.71 0.93 1.93 16 6 N -0.58 -4.66 10.46 -197.99 -2.07 -6.73 16 7 C 0.55 4.47 8.40 261.48 2.20 6.67 16 8 N -0.68 -1.62 5.22 -330.41 -1.73 -3.35 16 9 C 0.16 0.02 2.45 44.99 0.11 0.13 16 10 H 0.08 0.31 7.50 -2.39 -0.02 0.30 16 11 C -0.11 0.48 5.39 30.59 0.16 0.64 16 12 C -0.10 0.20 5.19 30.59 0.16 0.35 16 13 C 0.01 0.01 2.66 -11.54 -0.03 -0.02 16 14 H 0.13 -0.17 8.14 -2.39 -0.02 -0.19 16 15 C 0.26 2.06 6.74 88.39 0.60 2.65 16 16 N -0.51 -6.11 11.34 -296.27 -3.36 -9.47 16 17 C -0.01 -0.13 7.24 39.32 0.28 0.15 16 18 C -0.08 -0.42 10.10 22.46 0.23 -0.19 16 19 C -0.11 0.08 10.02 22.26 0.22 0.30 16 20 C -0.09 0.13 10.03 22.31 0.22 0.35 16 21 C -0.10 -0.33 10.06 22.29 0.22 -0.10 16 22 C -0.02 -0.19 7.43 22.88 0.17 -0.02 16 23 O -0.22 -2.21 10.77 -9.98 -0.11 -2.32 16 24 C -0.10 -0.07 5.19 30.60 0.16 0.09 16 25 C -0.12 -0.01 5.51 30.60 0.17 0.16 16 26 N -0.58 -5.50 9.20 -197.98 -1.82 -7.32 16 27 C 0.17 1.30 9.92 84.72 0.84 2.14 16 28 H 0.41 -5.35 8.74 -74.06 -0.65 -6.00 16 29 H 0.10 -0.81 7.96 -2.39 -0.02 -0.83 16 30 H -0.30 -1.24 7.06 99.48 0.70 -0.54 16 31 H -0.29 -0.64 7.11 99.48 0.71 0.07 16 32 H 0.19 -0.24 8.06 -2.91 -0.02 -0.26 16 33 H 0.42 -0.37 8.72 -92.71 -0.81 -1.17 16 34 H 0.08 -0.37 8.14 -2.39 -0.02 -0.39 16 35 H 0.09 -0.65 8.14 -2.39 -0.02 -0.67 16 36 H 0.07 -0.02 8.14 -2.39 -0.02 -0.04 16 37 H 0.08 -0.17 8.14 -2.38 -0.02 -0.19 16 38 H 0.14 0.36 8.06 -2.91 -0.02 0.34 16 39 H 0.17 -1.23 8.06 -2.91 -0.02 -1.26 16 40 H 0.18 -1.51 8.06 -2.91 -0.02 -1.54 16 41 H 0.15 -0.16 8.06 -2.91 -0.02 -0.19 16 42 H 0.07 0.17 8.14 -2.39 -0.02 0.15 16 43 H 0.07 0.11 8.14 -2.39 -0.02 0.09 16 44 H 0.08 -0.15 8.14 -2.39 -0.02 -0.17 16 45 H 0.06 0.24 8.14 -2.39 -0.02 0.22 16 46 H 0.16 0.87 5.04 -2.91 -0.01 0.86 16 Total: 0.00 -24.65 380.94 -2.59 -27.24 By element: Atomic # 1 Polarization: -11.03 SS G_CDS: -0.39 Total: -11.42 kcal Atomic # 6 Polarization: 7.67 SS G_CDS: 6.74 Total: 14.41 kcal Atomic # 7 Polarization: -17.89 SS G_CDS: -8.98 Total: -26.87 kcal Atomic # 8 Polarization: -0.68 SS G_CDS: -2.02 Total: -2.70 kcal Atomic # 14 Polarization: -2.72 SS G_CDS: 2.05 Total: -0.67 kcal Total: -24.65 -2.59 -27.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_13774300_12175864.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.189 kcal (2) G-P(sol) polarization free energy of solvation -24.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds