Wall clock time and date at job start Mon Mar 8 2021 07:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.33325 * 125.94891 * 2 1 4 4 C 1.50697 * 122.71486 * 0.02562 * 3 2 1 5 5 O 1.42905 * 109.46976 * 29.99253 * 4 3 2 6 6 Si 1.86298 * 109.47440 * 149.99673 * 4 3 2 7 7 N 1.32134 * 114.57740 * 179.75195 * 3 2 1 8 8 C 1.29687 * 116.86439 * 0.47264 * 7 3 2 9 9 N 1.38606 * 124.94848 * 179.81587 * 8 7 3 10 10 C 1.46498 * 119.99817 * 179.97438 * 9 8 7 11 11 H 1.09004 * 109.47372 * 34.71901 * 10 9 8 12 12 C 1.52999 * 109.46963 * 154.72339 * 10 9 8 13 13 C 1.53003 * 109.47087 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.47241 * 300.00042 * 13 12 10 15 15 H 1.08995 * 109.47096 * 299.99819 * 14 13 12 16 16 C 1.50702 * 109.47467 * 179.97438 * 14 13 12 17 17 N 1.29902 * 124.85544 * 119.99579 * 16 14 13 18 18 C 1.36057 * 108.80488 * 180.02562 * 17 16 14 19 19 C 1.39544 * 133.81478 * 179.97438 * 18 17 16 20 20 C 1.37724 * 119.73268 * 179.97438 * 19 18 17 21 21 C 1.38676 * 120.42010 * 0.04245 * 20 19 18 22 22 C 1.37955 * 120.47644 * 359.97438 * 21 20 19 23 23 C 1.38630 * 119.87141 * 0.02562 * 22 21 20 24 24 O 1.34237 * 124.84680 * 299.69985 * 16 14 13 25 25 C 1.52999 * 109.47114 * 59.99975 * 14 13 12 26 26 C 1.52997 * 109.47036 * 274.72180 * 10 9 8 27 27 S 1.70965 * 110.10106 * 359.54907 * 8 7 3 28 28 H 1.09001 * 109.46886 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46876 * 299.97637 * 1 2 3 30 30 H 1.08997 * 109.46563 * 59.97679 * 1 2 3 31 31 H 1.09000 * 109.46815 * 269.99628 * 4 3 2 32 32 H 0.96707 * 113.99186 * 60.00616 * 5 4 3 33 33 H 1.48498 * 110.00110 * 179.97438 * 6 4 3 34 34 H 1.48501 * 110.00077 * 301.31710 * 6 4 3 35 35 H 0.97001 * 119.99738 * 359.71587 * 9 8 7 36 36 H 1.08997 * 109.46923 * 299.99333 * 12 10 9 37 37 H 1.08995 * 109.47266 * 59.99845 * 12 10 9 38 38 H 1.09004 * 109.47044 * 59.99688 * 13 12 10 39 39 H 1.08997 * 109.47066 * 179.97438 * 13 12 10 40 40 H 1.08005 * 120.13422 * 0.02562 * 19 18 17 41 41 H 1.07999 * 119.78760 * 180.02562 * 20 19 18 42 42 H 1.07994 * 119.76116 * 179.97438 * 21 20 19 43 43 H 1.08000 * 120.06447 * 180.02562 * 22 21 20 44 44 H 1.08995 * 109.47266 * 59.99948 * 25 14 13 45 45 H 1.09000 * 109.47204 * 180.02562 * 25 14 13 46 46 H 1.09009 * 109.47238 * 300.00198 * 26 10 9 47 47 H 1.08997 * 109.47293 * 60.00168 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2897 1.0793 0.0000 4 6 1.7415 2.4830 0.0006 5 8 0.4815 2.5019 0.6745 6 14 2.9326 3.6147 0.8787 7 7 3.5851 0.8188 0.0052 8 6 3.9316 -0.4309 0.0000 9 7 5.2385 -0.8926 0.0005 10 6 5.5066 -2.3328 -0.0051 11 1 4.7438 -2.8421 -0.5940 12 6 6.8834 -2.5928 -0.6195 13 6 7.1637 -4.0970 -0.6249 14 6 7.1378 -4.6257 0.8106 15 1 7.9005 -4.1161 1.3993 16 6 7.4132 -6.1073 0.8054 17 7 8.4093 -6.6794 1.4120 18 6 8.3450 -8.0205 1.1920 19 6 9.1314 -9.1032 1.5876 20 6 8.7910 -10.3767 1.1884 21 6 7.6730 -10.5888 0.3958 22 6 6.8866 -9.5278 -0.0031 23 6 7.2145 -8.2394 0.3895 24 8 6.6610 -7.0251 0.1778 25 6 5.7609 -4.3656 1.4251 26 6 5.4805 -2.8620 1.4302 27 16 2.5414 -1.4261 0.0000 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5135 0.8902 30 1 -0.3632 0.5142 -0.8898 31 1 1.6090 2.8217 -1.0270 32 1 0.5241 2.2118 1.5961 33 1 2.4036 5.0023 0.8856 34 1 3.1463 3.1453 2.2713 35 1 5.9756 -0.2620 0.0008 36 1 6.9020 -2.2159 -1.6421 37 1 7.6462 -2.0836 -0.0306 38 1 6.4009 -4.6066 -1.2136 39 1 8.1444 -4.2822 -1.0630 40 1 10.0031 -8.9434 2.2050 41 1 9.3988 -11.2153 1.4944 42 1 7.4162 -11.5917 0.0886 43 1 6.0172 -9.7007 -0.6200 44 1 4.9982 -4.8752 0.8364 45 1 5.7426 -4.7419 2.4479 46 1 6.2433 -2.3527 2.0192 47 1 4.4996 -2.6768 1.8680 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_13774300_15704122.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:04:08 Heat of formation + Delta-G solvation = 53.648004 kcal Electronic energy + Delta-G solvation = -30356.820612 eV Core-core repulsion = 26213.049018 eV Total energy + Delta-G solvation = -4143.771595 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 372.129 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -44.36791 -41.11791 -40.21817 -38.96318 -37.94000 -36.39268 -35.69259 -33.10438 -31.97446 -31.72657 -31.61469 -29.88215 -28.85026 -25.73285 -25.15924 -24.34294 -24.16821 -23.66316 -23.03517 -22.32184 -21.39150 -20.40133 -19.13393 -18.94222 -18.29506 -18.01322 -17.81673 -17.31209 -17.13795 -16.71076 -16.51760 -15.77418 -15.72050 -15.52787 -15.28265 -15.17170 -15.06411 -14.82712 -14.27889 -14.26371 -14.06567 -13.85685 -13.72223 -13.53616 -13.44900 -13.34760 -13.20258 -12.87706 -12.61541 -12.57302 -12.47487 -12.43042 -12.31284 -12.22276 -11.97495 -11.68648 -11.57073 -11.46595 -10.91133 -10.64627 -10.54777 -10.02957 -9.86996 -9.52286 -8.61607 -4.78506 -0.37888 -0.01487 0.15820 0.16762 0.74263 1.29949 1.30490 1.39648 1.67381 1.83183 1.91058 2.00291 2.59570 2.61012 3.28707 3.41839 3.46473 3.52736 3.54573 3.74922 3.81468 4.00933 4.03082 4.10078 4.14973 4.17040 4.21936 4.23955 4.27847 4.32501 4.38477 4.40073 4.54376 4.57991 4.68539 4.79425 4.81490 4.86454 4.89935 4.97664 4.99566 5.02952 5.04794 5.06529 5.15395 5.18650 5.25482 5.28727 5.30746 5.34271 5.65999 5.66648 6.32244 6.45239 6.49892 6.93752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C -0.259 4.259 3 C 0.056 3.944 4 C -0.041 4.041 5 O -0.533 6.533 6 Si 0.783 3.217 7 N -0.557 5.557 8 C 0.315 3.685 9 N -0.680 5.680 10 C 0.151 3.849 11 H 0.082 0.918 12 C -0.113 4.113 13 C -0.106 4.106 14 C 0.006 3.994 15 H 0.127 0.873 16 C 0.257 3.743 17 N -0.510 5.510 18 C -0.012 4.012 19 C -0.082 4.082 20 C -0.112 4.112 21 C -0.087 4.087 22 C -0.102 4.102 23 C -0.019 4.019 24 O -0.219 6.219 25 C -0.106 4.106 26 C -0.128 4.128 27 S 0.113 5.887 28 H 0.064 0.936 29 H 0.085 0.915 30 H 0.071 0.929 31 H 0.131 0.869 32 H 0.384 0.616 33 H -0.293 1.293 34 H -0.305 1.305 35 H 0.420 0.580 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.142 0.858 41 H 0.168 0.832 42 H 0.175 0.825 43 H 0.153 0.847 44 H 0.075 0.925 45 H 0.072 0.928 46 H 0.085 0.915 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.896 -4.732 -1.818 5.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.382 4.382 3 C -0.074 4.074 4 C -0.154 4.154 5 O -0.340 6.340 6 Si 0.689 3.311 7 N -0.285 5.285 8 C -0.057 4.057 9 N -0.320 5.320 10 C 0.046 3.954 11 H 0.100 0.900 12 C -0.150 4.150 13 C -0.145 4.145 14 C -0.013 4.013 15 H 0.145 0.855 16 C 0.045 3.955 17 N -0.239 5.239 18 C -0.123 4.123 19 C -0.100 4.100 20 C -0.131 4.131 21 C -0.104 4.104 22 C -0.121 4.121 23 C -0.068 4.068 24 O -0.111 6.111 25 C -0.145 4.145 26 C -0.167 4.167 27 S 0.362 5.638 28 H 0.083 0.917 29 H 0.103 0.897 30 H 0.090 0.910 31 H 0.149 0.851 32 H 0.234 0.766 33 H -0.221 1.221 34 H -0.233 1.233 35 H 0.259 0.741 36 H 0.108 0.892 37 H 0.111 0.889 38 H 0.094 0.906 39 H 0.099 0.901 40 H 0.160 0.840 41 H 0.185 0.815 42 H 0.192 0.808 43 H 0.171 0.829 44 H 0.094 0.906 45 H 0.091 0.909 46 H 0.103 0.897 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.567 -4.580 -1.378 5.428 hybrid contribution -1.221 0.208 0.492 1.333 sum 1.346 -4.372 -0.885 4.659 Atomic orbital electron populations 1.20144 0.85816 1.02050 1.03645 1.25359 1.02034 0.93311 1.17487 1.20205 0.87102 0.97511 1.02578 1.24495 0.91705 0.95107 1.04077 1.86601 1.28668 1.89072 1.29663 0.92874 0.85279 0.73754 0.79169 1.65740 1.17118 1.17145 1.28501 1.23502 0.92786 0.91301 0.98071 1.44102 1.01101 1.07492 1.79332 1.21268 0.99256 0.78202 0.96707 0.89971 1.21685 0.94968 0.95324 1.03068 1.21539 1.03797 0.95771 0.93396 1.20200 1.00933 0.79654 1.00512 0.85481 1.26990 0.85096 0.94808 0.88582 1.70616 1.23225 1.05774 1.24290 1.20307 0.98219 0.91658 1.02077 1.20662 0.99202 0.90211 0.99974 1.21517 0.97732 0.96508 0.97363 1.21544 0.93444 0.99571 0.95881 1.20337 1.02763 0.86397 1.02594 1.20785 0.96124 0.87024 1.02895 1.84455 1.49116 1.14952 1.62546 1.21517 0.94505 0.96712 1.01775 1.21978 1.03385 0.94534 0.96852 1.83905 0.96082 1.09859 1.73970 0.91723 0.89693 0.90996 0.85129 0.76617 1.22072 1.23281 0.74087 0.89161 0.88870 0.90593 0.90111 0.84040 0.81470 0.80771 0.82889 0.90637 0.90920 0.89683 0.91321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.04 8.91 71.24 0.63 0.60 16 2 C -0.26 -0.91 6.50 24.58 0.16 -0.75 16 3 C 0.06 0.26 5.92 41.40 0.25 0.51 16 4 C -0.04 -0.11 2.94 71.24 0.21 0.10 16 5 O -0.53 -1.38 10.17 -148.98 -1.52 -2.90 16 6 Si 0.78 2.60 32.08 68.60 2.20 4.80 16 7 N -0.56 -2.67 8.94 -189.86 -1.70 -4.37 16 8 C 0.31 0.55 8.22 179.32 1.47 2.03 16 9 N -0.68 2.64 5.23 -330.41 -1.73 0.91 16 10 C 0.15 -1.01 2.41 44.99 0.11 -0.90 16 11 H 0.08 -0.46 7.25 -2.39 -0.02 -0.48 16 12 C -0.11 1.05 5.39 30.59 0.16 1.21 16 13 C -0.11 0.68 5.19 30.59 0.16 0.83 16 14 C 0.01 -0.02 2.66 -11.54 -0.03 -0.05 16 15 H 0.13 -0.60 8.14 -2.39 -0.02 -0.62 16 16 C 0.26 1.25 6.74 88.39 0.60 1.85 16 17 N -0.51 -4.96 11.34 -296.27 -3.36 -8.32 16 18 C -0.01 -0.11 7.24 39.32 0.28 0.18 16 19 C -0.08 -0.31 10.10 22.46 0.23 -0.09 16 20 C -0.11 0.21 10.02 22.25 0.22 0.43 16 21 C -0.09 0.25 10.03 22.31 0.22 0.47 16 22 C -0.10 -0.12 10.06 22.30 0.22 0.11 16 23 C -0.02 -0.13 7.43 22.88 0.17 0.04 16 24 O -0.22 -1.47 10.77 -10.06 -0.11 -1.58 16 25 C -0.11 0.49 5.18 30.58 0.16 0.65 16 26 C -0.13 0.79 5.51 30.58 0.17 0.95 16 27 S 0.11 0.12 21.70 -56.49 -1.23 -1.10 16 28 H 0.06 -0.06 8.14 -2.39 -0.02 -0.07 16 29 H 0.08 -0.07 6.39 -2.39 -0.02 -0.08 16 30 H 0.07 0.11 8.14 -2.39 -0.02 0.09 16 31 H 0.13 0.13 7.96 -2.39 -0.02 0.12 16 32 H 0.38 -0.78 8.13 -74.05 -0.60 -1.38 16 33 H -0.29 -2.46 7.11 99.48 0.71 -1.75 16 34 H -0.31 -2.92 7.11 99.48 0.71 -2.21 16 35 H 0.42 -2.55 8.73 -92.71 -0.81 -3.35 16 36 H 0.09 -0.88 8.14 -2.39 -0.02 -0.90 16 37 H 0.09 -1.05 8.14 -2.39 -0.02 -1.07 16 38 H 0.08 -0.42 8.14 -2.39 -0.02 -0.44 16 39 H 0.08 -0.46 8.14 -2.39 -0.02 -0.48 16 40 H 0.14 0.20 8.06 -2.91 -0.02 0.18 16 41 H 0.17 -1.35 8.06 -2.91 -0.02 -1.38 16 42 H 0.17 -1.71 8.06 -2.91 -0.02 -1.73 16 43 H 0.15 -0.50 8.06 -2.91 -0.02 -0.52 16 44 H 0.07 -0.30 8.14 -2.39 -0.02 -0.32 16 45 H 0.07 -0.22 8.14 -2.39 -0.02 -0.24 16 46 H 0.08 -0.59 8.14 -2.38 -0.02 -0.61 16 47 H 0.07 -0.27 8.06 -2.39 -0.02 -0.29 16 Total: 0.00 -19.55 395.04 -2.39 -21.94 By element: Atomic # 1 Polarization: -17.19 SS G_CDS: -0.36 Total: -17.55 kcal Atomic # 6 Polarization: 2.76 SS G_CDS: 5.40 Total: 8.16 kcal Atomic # 7 Polarization: -4.99 SS G_CDS: -6.78 Total: -11.77 kcal Atomic # 8 Polarization: -2.85 SS G_CDS: -1.62 Total: -4.47 kcal Atomic # 14 Polarization: 2.60 SS G_CDS: 2.20 Total: 4.80 kcal Atomic # 16 Polarization: 0.12 SS G_CDS: -1.23 Total: -1.10 kcal Total: -19.55 -2.39 -21.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_13774300_15704122.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.585 kcal (2) G-P(sol) polarization free energy of solvation -19.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds