Wall clock time and date at job start Mon Mar 8 2021 07:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86298 * 109.47118 * 2 1 4 4 C 1.50697 * 109.47691 * 120.00439 * 2 1 3 5 5 C 1.37980 * 120.32902 * 244.97624 * 4 2 1 6 6 N 1.32007 * 120.90301 * 180.02562 * 5 4 2 7 7 C 1.32337 * 121.64439 * 0.02562 * 6 5 4 8 8 N 1.39148 * 119.71634 * 180.27452 * 7 6 5 9 9 C 1.46497 * 120.00060 * 359.72463 * 8 7 6 10 10 H 1.09004 * 109.47218 * 34.99883 * 9 8 7 11 11 C 1.53000 * 109.47099 * 154.99853 * 9 8 7 12 12 C 1.53008 * 109.47178 * 180.02562 * 11 9 8 13 13 C 1.53008 * 109.46736 * 300.00292 * 12 11 9 14 14 H 1.09004 * 109.46870 * 299.99903 * 13 12 11 15 15 C 1.50698 * 109.46828 * 180.02562 * 13 12 11 16 16 N 1.29903 * 124.84974 * 299.69630 * 15 13 12 17 17 C 1.36060 * 108.79922 * 179.83885 * 16 15 13 18 18 C 1.39550 * 133.80766 * 180.11346 * 17 16 15 19 19 C 1.37726 * 119.72707 * 180.32721 * 18 17 16 20 20 C 1.38676 * 120.42277 * 0.02562 * 19 18 17 21 21 C 1.37948 * 120.47562 * 359.97438 * 20 19 18 22 22 C 1.38628 * 119.87505 * 359.97438 * 21 20 19 23 23 O 1.34234 * 124.85241 * 119.99779 * 15 13 12 24 24 C 1.52996 * 109.47204 * 60.00051 * 13 12 11 25 25 C 1.52999 * 109.47081 * 275.00269 * 9 8 7 26 26 C 1.39345 * 120.56527 * 359.97438 * 7 6 5 27 27 F 1.35105 * 120.47072 * 179.97438 * 26 7 6 28 28 C 1.38438 * 119.05622 * 0.02562 * 26 7 6 29 29 H 0.96704 * 113.99362 * 299.99204 * 1 2 3 30 30 H 1.09001 * 109.46755 * 240.00837 * 2 1 3 31 31 H 1.48501 * 110.00378 * 300.00908 * 3 2 1 32 32 H 1.48510 * 109.99689 * 61.32680 * 3 2 1 33 33 H 1.08002 * 119.55035 * 359.97438 * 5 4 2 34 34 H 0.97000 * 119.99732 * 179.72537 * 8 7 6 35 35 H 1.08996 * 109.47134 * 299.99733 * 11 9 8 36 36 H 1.08993 * 109.46965 * 60.00408 * 11 9 8 37 37 H 1.09001 * 109.46870 * 59.99897 * 12 11 9 38 38 H 1.08991 * 109.46930 * 179.97438 * 12 11 9 39 39 H 1.07997 * 120.13912 * 0.30552 * 18 17 16 40 40 H 1.08003 * 119.78819 * 179.97438 * 19 18 17 41 41 H 1.08005 * 119.76309 * 180.02562 * 20 19 18 42 42 H 1.07997 * 120.06420 * 180.02562 * 21 20 19 43 43 H 1.09001 * 109.47572 * 59.99679 * 24 13 12 44 44 H 1.08996 * 109.46812 * 180.02562 * 24 13 12 45 45 H 1.09001 * 109.47028 * 299.99432 * 25 9 8 46 46 H 1.08991 * 109.47651 * 60.00034 * 25 9 8 47 47 H 1.08003 * 120.75753 * 180.02562 * 28 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9315 -0.7105 1.2303 5 6 2.6387 -0.0204 2.1934 6 7 3.0846 -0.6315 3.2752 7 6 2.8742 -1.9219 3.4802 8 7 3.3574 -2.5242 4.6378 9 6 4.1007 -1.7316 5.6204 10 1 3.6901 -0.7226 5.6588 11 6 3.9795 -2.3844 6.9989 12 6 4.7552 -1.5562 8.0253 13 6 6.2291 -1.4915 7.6193 14 1 6.6400 -2.5004 7.5810 15 6 6.9932 -0.6764 8.6306 16 7 6.7559 0.5694 8.9120 17 6 7.6332 0.9776 9.8685 18 6 7.8394 2.1843 10.5385 19 6 8.8438 2.2820 11.4758 20 6 9.6507 1.1898 11.7569 21 6 9.4583 -0.0091 11.1023 22 6 8.4514 -0.1257 10.1567 23 8 8.0201 -1.1323 9.3652 24 6 6.3502 -0.8388 6.2409 25 6 5.5744 -1.6674 5.2142 26 6 2.1676 -2.6812 2.5497 27 9 1.9544 -3.9986 2.7607 28 6 1.6881 -2.0668 1.4056 29 1 -0.3932 0.4416 0.7652 30 1 1.7923 -0.5137 -0.8901 31 1 1.5614 2.4680 -1.2084 32 1 1.5880 2.4585 1.2244 33 1 2.8309 1.0340 2.0599 34 1 3.2021 -3.4688 4.7940 35 1 2.9296 -2.4300 7.2882 36 1 4.3901 -3.3933 6.9604 37 1 4.3443 -0.5474 8.0635 38 1 4.6685 -2.0210 9.0073 39 1 7.2143 3.0381 10.3227 40 1 9.0045 3.2156 11.9946 41 1 10.4350 1.2782 12.4942 42 1 10.0903 -0.8556 11.3267 43 1 5.9392 0.1701 6.2792 44 1 7.4000 -0.7931 5.9516 45 1 5.9850 -2.6764 5.1759 46 1 5.6607 -1.2024 4.2323 47 1 1.1366 -2.6290 0.6665 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_13774300_17656566.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:04:13 Heat of formation + Delta-G solvation = 2.318991 kcal Electronic energy + Delta-G solvation = -32327.566165 eV Core-core repulsion = 27778.500175 eV Total energy + Delta-G solvation = -4549.065991 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 370.148 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -49.85195 -44.22306 -41.47812 -40.10147 -38.92082 -38.09888 -36.46870 -35.45216 -33.33604 -32.59924 -31.97808 -31.63991 -30.91322 -29.36142 -26.60257 -25.51544 -24.49910 -23.92682 -23.82795 -23.07677 -22.82318 -22.05794 -20.97418 -19.33866 -18.98271 -18.52459 -18.32605 -18.23243 -17.64828 -17.62834 -17.11062 -16.94669 -16.43833 -16.18279 -15.94300 -15.64729 -15.47090 -15.42740 -15.25437 -14.98995 -14.76036 -14.56147 -14.35619 -14.26780 -13.96964 -13.79865 -13.43977 -13.40101 -13.35139 -13.23813 -12.72793 -12.61060 -12.48801 -12.43715 -12.28324 -12.25426 -12.00756 -11.86435 -11.48196 -11.34741 -11.13553 -10.77143 -10.60249 -10.52182 -9.79029 -9.41406 -8.76839 -5.00454 -0.29670 -0.05209 0.13727 0.24457 1.22260 1.43800 1.44908 1.54302 1.92625 1.93932 2.56569 2.67489 2.74036 3.05470 3.25889 3.35417 3.46996 3.51561 3.54406 3.56774 3.72571 3.83266 3.86334 3.95969 4.01648 4.05163 4.15673 4.20272 4.21790 4.27767 4.28890 4.34448 4.41778 4.43115 4.44877 4.61582 4.64223 4.72898 4.86405 4.88231 4.91334 4.99110 5.01270 5.04719 5.06641 5.14497 5.22986 5.28348 5.32263 5.36592 5.43544 5.65561 5.95918 6.18050 6.35795 6.66390 6.96973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.530 6.530 2 C -0.061 4.061 3 Si 0.683 3.317 4 C -0.208 4.208 5 C 0.147 3.853 6 N -0.510 5.510 7 C 0.393 3.607 8 N -0.714 5.714 9 C 0.155 3.845 10 H 0.097 0.903 11 C -0.126 4.126 12 C -0.104 4.104 13 C 0.003 3.997 14 H 0.103 0.897 15 C 0.255 3.745 16 N -0.471 5.471 17 C 0.021 3.979 18 C -0.062 4.062 19 C -0.119 4.119 20 C -0.093 4.093 21 C -0.093 4.093 22 C 0.006 3.994 23 O -0.214 6.214 24 C -0.105 4.105 25 C -0.126 4.126 26 C -0.021 4.021 27 F -0.134 7.134 28 C -0.038 4.038 29 H 0.376 0.624 30 H 0.120 0.880 31 H -0.254 1.254 32 H -0.256 1.256 33 H 0.163 0.837 34 H 0.412 0.588 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.084 0.916 38 H 0.074 0.926 39 H 0.137 0.863 40 H 0.139 0.861 41 H 0.142 0.858 42 H 0.136 0.864 43 H 0.084 0.916 44 H 0.072 0.928 45 H 0.066 0.934 46 H 0.078 0.922 47 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.866 0.157 1.338 3.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.336 6.336 2 C -0.172 4.172 3 Si 0.584 3.416 4 C -0.214 4.214 5 C -0.011 4.011 6 N -0.227 5.227 7 C 0.154 3.846 8 N -0.346 5.346 9 C 0.050 3.950 10 H 0.115 0.885 11 C -0.165 4.165 12 C -0.143 4.143 13 C -0.016 4.016 14 H 0.121 0.879 15 C 0.043 3.957 16 N -0.200 5.200 17 C -0.090 4.090 18 C -0.080 4.080 19 C -0.138 4.138 20 C -0.111 4.111 21 C -0.112 4.112 22 C -0.044 4.044 23 O -0.106 6.106 24 C -0.144 4.144 25 C -0.165 4.165 26 C -0.048 4.048 27 F -0.113 7.113 28 C -0.064 4.064 29 H 0.224 0.776 30 H 0.137 0.863 31 H -0.179 1.179 32 H -0.181 1.181 33 H 0.180 0.820 34 H 0.249 0.751 35 H 0.097 0.903 36 H 0.091 0.909 37 H 0.102 0.898 38 H 0.093 0.907 39 H 0.155 0.845 40 H 0.157 0.843 41 H 0.159 0.841 42 H 0.153 0.847 43 H 0.102 0.898 44 H 0.090 0.910 45 H 0.085 0.915 46 H 0.097 0.903 47 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 2.839 1.589 1.295 3.502 hybrid contribution -1.002 -1.803 0.375 2.096 sum 1.837 -0.213 1.670 2.492 Atomic orbital electron populations 1.86617 1.17722 1.79947 1.49345 1.24820 0.83885 1.10799 0.97693 0.95072 0.91557 0.74308 0.80693 1.20849 1.05845 0.94546 1.00131 1.22405 0.91538 0.99541 0.87575 1.67332 1.25050 1.07162 1.23136 1.18437 0.90234 0.88953 0.86975 1.44665 1.59120 1.12207 1.18564 1.21027 0.91297 0.96391 0.86284 0.88530 1.21814 1.01451 0.99663 0.93522 1.21514 0.91583 1.02314 0.98869 1.19938 0.93940 0.97675 0.90078 0.87900 1.26426 0.86189 0.89929 0.93108 1.70589 1.24834 1.09947 1.14661 1.19916 0.95240 0.95970 0.97896 1.20372 0.97920 0.94981 0.94766 1.21111 0.95249 0.99507 0.97979 1.21077 0.99494 0.91502 0.99026 1.19931 0.96479 0.99533 0.95277 1.20351 0.99998 0.87073 0.97011 1.84510 1.42976 1.38351 1.44741 1.21554 1.01400 1.00402 0.91043 1.21951 0.94509 1.00632 0.99420 1.18010 1.08718 0.79544 0.98481 1.91493 1.93682 1.31194 1.94918 1.21284 0.95555 0.94437 0.95105 0.77593 0.86263 1.17879 1.18068 0.82029 0.75139 0.90349 0.90881 0.89763 0.90710 0.84541 0.84349 0.84052 0.84652 0.89776 0.90974 0.91517 0.90314 0.83384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.24 12.84 -35.23 -0.45 -0.70 16 2 C -0.06 0.07 2.82 36.00 0.10 0.17 16 3 Si 0.68 -1.28 29.91 -169.99 -5.08 -6.36 16 4 C -0.21 0.10 5.36 -104.47 -0.56 -0.46 16 5 C 0.15 -0.04 9.84 -17.57 -0.17 -0.21 16 6 N -0.51 -0.58 9.20 -12.36 -0.11 -0.69 16 7 C 0.39 0.39 7.47 -154.85 -1.16 -0.76 16 8 N -0.71 0.53 5.22 -53.85 -0.28 0.25 16 9 C 0.15 -0.22 2.47 -67.93 -0.17 -0.39 16 10 H 0.10 0.00 7.54 -51.93 -0.39 -0.39 16 11 C -0.13 0.34 5.39 -26.73 -0.14 0.19 16 12 C -0.10 0.17 5.18 -26.72 -0.14 0.03 16 13 C 0.00 0.00 2.66 -91.77 -0.24 -0.25 16 14 H 0.10 -0.22 8.14 -51.93 -0.42 -0.64 16 15 C 0.26 0.63 6.75 -13.09 -0.09 0.54 16 16 N -0.47 -1.91 11.32 -8.70 -0.10 -2.01 16 17 C 0.02 0.08 7.24 -84.71 -0.61 -0.53 16 18 C -0.06 -0.11 10.10 -39.28 -0.40 -0.50 16 19 C -0.12 0.02 10.02 -39.61 -0.40 -0.37 16 20 C -0.09 0.04 10.03 -39.53 -0.40 -0.36 16 21 C -0.09 -0.11 10.06 -39.54 -0.40 -0.50 16 22 C 0.01 0.02 7.43 -38.65 -0.29 -0.27 16 23 O -0.21 -0.78 10.77 3.61 0.04 -0.74 16 24 C -0.11 0.11 5.18 -26.70 -0.14 -0.02 16 25 C -0.13 0.20 5.51 -26.70 -0.15 0.05 16 26 C -0.02 -0.03 7.35 -39.10 -0.29 -0.31 16 27 F -0.13 -0.25 16.65 2.25 0.04 -0.21 16 28 C -0.04 -0.02 9.82 -39.26 -0.39 -0.40 16 29 H 0.38 -0.85 8.70 45.56 0.40 -0.46 16 30 H 0.12 -0.23 7.96 -51.93 -0.41 -0.65 16 31 H -0.25 -0.40 7.11 56.52 0.40 0.00 16 32 H -0.26 0.03 7.01 56.52 0.40 0.43 16 33 H 0.16 -0.35 4.84 -52.49 -0.25 -0.61 16 34 H 0.41 -0.74 8.07 -40.82 -0.33 -1.07 16 35 H 0.08 -0.20 8.14 -51.93 -0.42 -0.62 16 36 H 0.07 -0.26 8.14 -51.93 -0.42 -0.68 16 37 H 0.08 -0.04 8.14 -51.93 -0.42 -0.46 16 38 H 0.07 -0.12 8.14 -51.93 -0.42 -0.54 16 39 H 0.14 0.04 8.06 -52.49 -0.42 -0.38 16 40 H 0.14 -0.38 8.06 -52.48 -0.42 -0.80 16 41 H 0.14 -0.45 8.06 -52.48 -0.42 -0.87 16 42 H 0.14 -0.11 8.06 -52.49 -0.42 -0.53 16 43 H 0.08 0.00 8.14 -51.93 -0.42 -0.42 16 44 H 0.07 -0.06 8.14 -51.93 -0.42 -0.48 16 45 H 0.07 -0.13 8.14 -51.93 -0.42 -0.55 16 46 H 0.08 -0.02 8.14 -51.93 -0.42 -0.45 16 47 H 0.15 -0.06 8.06 -52.48 -0.42 -0.48 16 LS Contribution 391.38 15.07 5.90 5.90 Total: 0.00 -7.41 391.38 -12.19 -19.59 By element: Atomic # 1 Polarization: -4.55 SS G_CDS: -6.11 Total: -10.66 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: -6.02 Total: -4.37 kcal Atomic # 7 Polarization: -1.96 SS G_CDS: -0.49 Total: -2.45 kcal Atomic # 8 Polarization: -1.02 SS G_CDS: -0.41 Total: -1.44 kcal Atomic # 9 Polarization: -0.25 SS G_CDS: 0.04 Total: -0.21 kcal Atomic # 14 Polarization: -1.28 SS G_CDS: -5.08 Total: -6.36 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -7.41 -12.19 -19.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_13774300_17656566.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.912 kcal (2) G-P(sol) polarization free energy of solvation -7.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds