Wall clock time and date at job start Mon Mar 8 2021 07:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86298 * 109.47118 * 2 1 4 4 C 1.50697 * 109.47691 * 120.00439 * 2 1 3 5 5 C 1.37980 * 120.32902 * 244.97624 * 4 2 1 6 6 N 1.32007 * 120.90301 * 180.02562 * 5 4 2 7 7 C 1.32337 * 121.64439 * 0.02562 * 6 5 4 8 8 N 1.39148 * 119.71634 * 180.27452 * 7 6 5 9 9 C 1.46497 * 120.00060 * 359.72463 * 8 7 6 10 10 H 1.09004 * 109.47218 * 34.99883 * 9 8 7 11 11 C 1.53000 * 109.47099 * 154.99853 * 9 8 7 12 12 C 1.53008 * 109.47178 * 180.02562 * 11 9 8 13 13 C 1.53008 * 109.46736 * 300.00292 * 12 11 9 14 14 H 1.09004 * 109.46870 * 299.99903 * 13 12 11 15 15 C 1.50698 * 109.46828 * 180.02562 * 13 12 11 16 16 N 1.29903 * 124.84974 * 299.69630 * 15 13 12 17 17 C 1.36060 * 108.79922 * 179.83885 * 16 15 13 18 18 C 1.39550 * 133.80766 * 180.11346 * 17 16 15 19 19 C 1.37726 * 119.72707 * 180.32721 * 18 17 16 20 20 C 1.38676 * 120.42277 * 0.02562 * 19 18 17 21 21 C 1.37948 * 120.47562 * 359.97438 * 20 19 18 22 22 C 1.38628 * 119.87505 * 359.97438 * 21 20 19 23 23 O 1.34234 * 124.85241 * 119.99779 * 15 13 12 24 24 C 1.52996 * 109.47204 * 60.00051 * 13 12 11 25 25 C 1.52999 * 109.47081 * 275.00269 * 9 8 7 26 26 C 1.39345 * 120.56527 * 359.97438 * 7 6 5 27 27 F 1.35105 * 120.47072 * 179.97438 * 26 7 6 28 28 C 1.38438 * 119.05622 * 0.02562 * 26 7 6 29 29 H 0.96704 * 113.99362 * 299.99204 * 1 2 3 30 30 H 1.09001 * 109.46755 * 240.00837 * 2 1 3 31 31 H 1.48501 * 110.00378 * 300.00908 * 3 2 1 32 32 H 1.48510 * 109.99689 * 61.32680 * 3 2 1 33 33 H 1.08002 * 119.55035 * 359.97438 * 5 4 2 34 34 H 0.97000 * 119.99732 * 179.72537 * 8 7 6 35 35 H 1.08996 * 109.47134 * 299.99733 * 11 9 8 36 36 H 1.08993 * 109.46965 * 60.00408 * 11 9 8 37 37 H 1.09001 * 109.46870 * 59.99897 * 12 11 9 38 38 H 1.08991 * 109.46930 * 179.97438 * 12 11 9 39 39 H 1.07997 * 120.13912 * 0.30552 * 18 17 16 40 40 H 1.08003 * 119.78819 * 179.97438 * 19 18 17 41 41 H 1.08005 * 119.76309 * 180.02562 * 20 19 18 42 42 H 1.07997 * 120.06420 * 180.02562 * 21 20 19 43 43 H 1.09001 * 109.47572 * 59.99679 * 24 13 12 44 44 H 1.08996 * 109.46812 * 180.02562 * 24 13 12 45 45 H 1.09001 * 109.47028 * 299.99432 * 25 9 8 46 46 H 1.08991 * 109.47651 * 60.00034 * 25 9 8 47 47 H 1.08003 * 120.75753 * 180.02562 * 28 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9315 -0.7105 1.2303 5 6 2.6387 -0.0204 2.1934 6 7 3.0846 -0.6315 3.2752 7 6 2.8742 -1.9219 3.4802 8 7 3.3574 -2.5242 4.6378 9 6 4.1007 -1.7316 5.6204 10 1 3.6901 -0.7226 5.6588 11 6 3.9795 -2.3844 6.9989 12 6 4.7552 -1.5562 8.0253 13 6 6.2291 -1.4915 7.6193 14 1 6.6400 -2.5004 7.5810 15 6 6.9932 -0.6764 8.6306 16 7 6.7559 0.5694 8.9120 17 6 7.6332 0.9776 9.8685 18 6 7.8394 2.1843 10.5385 19 6 8.8438 2.2820 11.4758 20 6 9.6507 1.1898 11.7569 21 6 9.4583 -0.0091 11.1023 22 6 8.4514 -0.1257 10.1567 23 8 8.0201 -1.1323 9.3652 24 6 6.3502 -0.8388 6.2409 25 6 5.5744 -1.6674 5.2142 26 6 2.1676 -2.6812 2.5497 27 9 1.9544 -3.9986 2.7607 28 6 1.6881 -2.0668 1.4056 29 1 -0.3932 0.4416 0.7652 30 1 1.7923 -0.5137 -0.8901 31 1 1.5614 2.4680 -1.2084 32 1 1.5880 2.4585 1.2244 33 1 2.8309 1.0340 2.0599 34 1 3.2021 -3.4688 4.7940 35 1 2.9296 -2.4300 7.2882 36 1 4.3901 -3.3933 6.9604 37 1 4.3443 -0.5474 8.0635 38 1 4.6685 -2.0210 9.0073 39 1 7.2143 3.0381 10.3227 40 1 9.0045 3.2156 11.9946 41 1 10.4350 1.2782 12.4942 42 1 10.0903 -0.8556 11.3267 43 1 5.9392 0.1701 6.2792 44 1 7.4000 -0.7931 5.9516 45 1 5.9850 -2.6764 5.1759 46 1 5.6607 -1.2024 4.2323 47 1 1.1366 -2.6290 0.6665 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_13774300_17656566.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:04:12 Heat of formation + Delta-G solvation = 5.022414 kcal Electronic energy + Delta-G solvation = -32327.448936 eV Core-core repulsion = 27778.500175 eV Total energy + Delta-G solvation = -4548.948761 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 370.148 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -49.92935 -44.34942 -41.47051 -40.04649 -38.95320 -38.08047 -36.48139 -35.55058 -33.33986 -32.59145 -31.88804 -31.68520 -30.92560 -29.36612 -26.57324 -25.52119 -24.54157 -23.91787 -23.80327 -23.12980 -22.84661 -22.06452 -20.92343 -19.33342 -19.02280 -18.50940 -18.33960 -18.32631 -17.80890 -17.63914 -17.08616 -16.99268 -16.40019 -16.14737 -15.91484 -15.59414 -15.48845 -15.42897 -15.20397 -15.01534 -14.79135 -14.56801 -14.34173 -14.26192 -13.94627 -13.77788 -13.52814 -13.38391 -13.28794 -13.18752 -12.69146 -12.62169 -12.55476 -12.39236 -12.28986 -12.15709 -12.03959 -11.81808 -11.53230 -11.35105 -11.08620 -10.75117 -10.61064 -10.51832 -9.86379 -9.50075 -8.75089 -4.88876 -0.36814 -0.06382 0.12989 0.16658 1.31983 1.32488 1.37369 1.62374 1.98166 1.99284 2.55753 2.60798 2.69459 3.04685 3.29101 3.42844 3.44965 3.57390 3.60903 3.61817 3.74255 3.86650 3.91896 4.00181 4.07447 4.12281 4.15671 4.24415 4.27163 4.32155 4.35491 4.42799 4.44508 4.45264 4.52877 4.67670 4.73076 4.76272 4.87874 4.96352 5.00002 5.00903 5.01161 5.09088 5.13534 5.18123 5.25965 5.29687 5.31962 5.35071 5.47670 5.67384 6.00064 6.23174 6.50415 6.51905 6.99521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.549 6.549 2 C -0.066 4.066 3 Si 0.763 3.237 4 C -0.203 4.203 5 C 0.145 3.855 6 N -0.525 5.525 7 C 0.385 3.615 8 N -0.708 5.708 9 C 0.158 3.842 10 H 0.080 0.920 11 C -0.117 4.117 12 C -0.098 4.098 13 C 0.007 3.993 14 H 0.121 0.879 15 C 0.252 3.748 16 N -0.497 5.497 17 C -0.010 4.010 18 C -0.080 4.080 19 C -0.112 4.112 20 C -0.087 4.087 21 C -0.103 4.103 22 C -0.021 4.021 23 O -0.226 6.226 24 C -0.097 4.097 25 C -0.116 4.116 26 C -0.036 4.036 27 F -0.140 7.140 28 C -0.040 4.040 29 H 0.386 0.614 30 H 0.129 0.871 31 H -0.301 1.301 32 H -0.277 1.277 33 H 0.179 0.821 34 H 0.417 0.583 35 H 0.080 0.920 36 H 0.090 0.910 37 H 0.069 0.931 38 H 0.076 0.924 39 H 0.142 0.858 40 H 0.168 0.832 41 H 0.175 0.825 42 H 0.152 0.848 43 H 0.069 0.931 44 H 0.069 0.931 45 H 0.077 0.923 46 H 0.067 0.933 47 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.750 -0.065 2.076 4.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.357 6.357 2 C -0.176 4.176 3 Si 0.668 3.332 4 C -0.209 4.209 5 C -0.012 4.012 6 N -0.242 5.242 7 C 0.146 3.854 8 N -0.341 5.341 9 C 0.054 3.946 10 H 0.098 0.902 11 C -0.155 4.155 12 C -0.136 4.136 13 C -0.013 4.013 14 H 0.139 0.861 15 C 0.040 3.960 16 N -0.226 5.226 17 C -0.121 4.121 18 C -0.099 4.099 19 C -0.131 4.131 20 C -0.104 4.104 21 C -0.122 4.122 22 C -0.071 4.071 23 O -0.118 6.118 24 C -0.136 4.136 25 C -0.155 4.155 26 C -0.063 4.063 27 F -0.119 7.119 28 C -0.067 4.067 29 H 0.236 0.764 30 H 0.147 0.853 31 H -0.229 1.229 32 H -0.203 1.203 33 H 0.195 0.805 34 H 0.255 0.745 35 H 0.099 0.901 36 H 0.108 0.892 37 H 0.088 0.912 38 H 0.095 0.905 39 H 0.160 0.840 40 H 0.186 0.814 41 H 0.192 0.808 42 H 0.170 0.830 43 H 0.087 0.913 44 H 0.088 0.912 45 H 0.096 0.904 46 H 0.086 0.914 47 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 3.731 1.346 2.058 4.468 hybrid contribution -1.270 -1.644 0.166 2.085 sum 2.461 -0.298 2.224 3.330 Atomic orbital electron populations 1.86588 1.18560 1.80351 1.50191 1.25006 0.83289 1.11508 0.97785 0.94143 0.90265 0.71971 0.76865 1.20866 1.05570 0.94213 1.00234 1.22704 0.91067 1.00258 0.87186 1.67377 1.25669 1.07352 1.23801 1.18571 0.90347 0.89031 0.87419 1.44686 1.58781 1.12484 1.18129 1.20971 0.91107 0.95725 0.86817 0.90153 1.21740 1.01522 1.00051 0.92161 1.21444 0.91109 1.01739 0.99354 1.20101 0.94014 0.97994 0.89158 0.86128 1.27022 0.85919 0.89916 0.93098 1.70556 1.25686 1.10899 1.15488 1.20326 0.95909 0.97115 0.98702 1.20661 0.99069 0.94644 0.95551 1.21518 0.93969 1.00790 0.96841 1.21537 0.99632 0.90566 0.98698 1.20332 0.96114 1.00911 0.94819 1.20798 1.01112 0.87072 0.98100 1.84482 1.43427 1.38773 1.45149 1.21449 1.01204 0.99744 0.91177 1.21847 0.94327 1.00884 0.98468 1.18129 1.09636 0.79421 0.99104 1.91470 1.93831 1.31614 1.95017 1.21436 0.95370 0.94875 0.94988 0.76443 0.85312 1.22889 1.20316 0.80457 0.74500 0.90091 0.89193 0.91246 0.90496 0.83969 0.81443 0.80764 0.83002 0.91272 0.91192 0.90415 0.91430 0.82822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.51 12.84 -148.98 -1.91 -2.42 16 2 C -0.07 0.17 2.82 71.24 0.20 0.37 16 3 Si 0.76 -2.82 29.91 68.60 2.05 -0.77 16 4 C -0.20 0.20 5.36 -19.77 -0.11 0.10 16 5 C 0.14 -0.07 9.84 84.61 0.83 0.77 16 6 N -0.52 -1.46 9.20 -193.03 -1.78 -3.23 16 7 C 0.39 0.96 7.47 133.08 0.99 1.95 16 8 N -0.71 0.87 5.22 -324.28 -1.69 -0.82 16 9 C 0.16 -0.39 2.47 44.99 0.11 -0.28 16 10 H 0.08 0.10 7.54 -2.38 -0.02 0.08 16 11 C -0.12 0.64 5.39 30.60 0.16 0.80 16 12 C -0.10 0.24 5.18 30.60 0.16 0.40 16 13 C 0.01 -0.01 2.66 -11.54 -0.03 -0.04 16 14 H 0.12 -0.55 8.14 -2.38 -0.02 -0.57 16 15 C 0.25 1.65 6.75 88.39 0.60 2.25 16 16 N -0.50 -5.10 11.32 -296.27 -3.35 -8.46 16 17 C -0.01 -0.09 7.24 39.32 0.28 0.19 16 18 C -0.08 -0.35 10.10 22.47 0.23 -0.12 16 19 C -0.11 0.15 10.02 22.25 0.22 0.37 16 20 C -0.09 0.19 10.03 22.31 0.22 0.41 16 21 C -0.10 -0.22 10.06 22.29 0.22 0.00 16 22 C -0.02 -0.18 7.43 22.88 0.17 -0.01 16 23 O -0.23 -1.99 10.77 -10.01 -0.11 -2.10 16 24 C -0.10 0.10 5.18 30.61 0.16 0.26 16 25 C -0.12 0.32 5.51 30.61 0.17 0.49 16 26 C -0.04 -0.11 7.35 22.58 0.17 0.06 16 27 F -0.14 -0.59 16.65 44.97 0.75 0.15 16 28 C -0.04 -0.04 9.82 22.48 0.22 0.18 16 29 H 0.39 -1.71 8.70 -74.05 -0.64 -2.35 16 30 H 0.13 -0.58 7.96 -2.39 -0.02 -0.59 16 31 H -0.30 -1.30 7.11 99.48 0.71 -0.59 16 32 H -0.28 0.07 7.01 99.48 0.70 0.77 16 33 H 0.18 -0.82 4.84 -2.91 -0.01 -0.83 16 34 H 0.42 -1.53 8.07 -92.71 -0.75 -2.28 16 35 H 0.08 -0.43 8.14 -2.39 -0.02 -0.45 16 36 H 0.09 -0.74 8.14 -2.39 -0.02 -0.76 16 37 H 0.07 0.05 8.14 -2.39 -0.02 0.03 16 38 H 0.08 -0.20 8.14 -2.39 -0.02 -0.22 16 39 H 0.14 0.26 8.06 -2.91 -0.02 0.24 16 40 H 0.17 -1.28 8.06 -2.91 -0.02 -1.31 16 41 H 0.17 -1.60 8.06 -2.91 -0.02 -1.62 16 42 H 0.15 -0.33 8.06 -2.91 -0.02 -0.35 16 43 H 0.07 0.15 8.14 -2.39 -0.02 0.13 16 44 H 0.07 -0.04 8.14 -2.39 -0.02 -0.06 16 45 H 0.08 -0.36 8.14 -2.39 -0.02 -0.38 16 46 H 0.07 0.01 8.14 -2.39 -0.02 -0.01 16 47 H 0.15 -0.10 8.06 -2.91 -0.02 -0.12 16 Total: 0.00 -19.36 391.38 -1.39 -20.75 By element: Atomic # 1 Polarization: -10.92 SS G_CDS: -0.33 Total: -11.26 kcal Atomic # 6 Polarization: 3.17 SS G_CDS: 4.99 Total: 8.15 kcal Atomic # 7 Polarization: -5.69 SS G_CDS: -6.82 Total: -12.51 kcal Atomic # 8 Polarization: -2.49 SS G_CDS: -2.02 Total: -4.52 kcal Atomic # 9 Polarization: -0.59 SS G_CDS: 0.75 Total: 0.15 kcal Atomic # 14 Polarization: -2.82 SS G_CDS: 2.05 Total: -0.77 kcal Total: -19.36 -1.39 -20.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_13774300_17656566.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.771 kcal (2) G-P(sol) polarization free energy of solvation -19.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds