Wall clock time and date at job start Mon Mar 8 2021 04:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47159 * 2 1 4 4 C 1.53000 * 109.47284 * 240.00193 * 2 1 3 5 5 O 1.45194 * 109.47039 * 120.00091 * 2 1 3 6 6 C 1.34638 * 117.00320 * 60.00284 * 5 2 1 7 7 O 1.21516 * 119.99375 * 359.97438 * 6 5 2 8 8 N 1.34774 * 120.00641 * 179.97438 * 6 5 2 9 9 C 1.46496 * 120.00099 * 179.97438 * 8 6 5 10 10 H 1.08994 * 112.91109 * 23.75176 * 9 8 6 11 11 C 1.53787 * 113.61210 * 155.00440 * 9 8 6 12 12 C 1.53779 * 87.07963 * 139.97940 * 11 9 8 13 13 H 1.09007 * 113.61383 * 220.01369 * 12 11 9 14 14 N 1.46502 * 113.61301 * 89.11687 * 12 11 9 15 15 C 1.38413 * 119.99850 * 154.99899 * 14 12 11 16 16 N 1.32492 * 119.21518 * 359.72852 * 15 14 12 17 17 C 1.32274 * 120.73631 * 179.71815 * 16 15 14 18 18 C 1.38610 * 119.19901 * 0.54723 * 17 16 15 19 19 C 1.50699 * 120.72278 * 179.70764 * 18 17 16 20 20 O 1.42902 * 109.47135 * 120.01665 * 19 18 17 21 21 Si 1.86301 * 109.46930 * 0.02562 * 19 18 17 22 22 C 1.38602 * 118.55573 * 359.72496 * 18 17 16 23 23 N 1.32272 * 119.19843 * 0.02562 * 22 18 17 24 24 C 1.53779 * 87.08402 * 334.56577 * 12 11 9 25 25 H 1.08996 * 109.47601 * 299.99573 * 1 2 3 26 26 H 1.09008 * 109.47003 * 59.99972 * 1 2 3 27 27 H 1.09001 * 109.47089 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47346 * 179.97438 * 3 2 1 29 29 H 1.09003 * 109.47568 * 300.00538 * 3 2 1 30 30 H 1.09002 * 109.46886 * 59.99891 * 3 2 1 31 31 H 1.09001 * 109.47166 * 300.00086 * 4 2 1 32 32 H 1.09008 * 109.47235 * 59.99977 * 4 2 1 33 33 H 1.09005 * 109.47250 * 179.97438 * 4 2 1 34 34 H 0.97002 * 119.99411 * 0.02562 * 8 6 5 35 35 H 1.08997 * 113.61028 * 254.52900 * 11 9 8 36 36 H 1.09000 * 113.61529 * 25.43039 * 11 9 8 37 37 H 0.96996 * 120.00397 * 334.99617 * 14 12 11 38 38 H 1.08002 * 120.39993 * 180.29752 * 17 16 15 39 39 H 1.08993 * 109.47089 * 240.01798 * 19 18 17 40 40 H 0.96700 * 113.99917 * 300.00111 * 20 19 18 41 41 H 1.48500 * 109.99903 * 180.02562 * 21 19 18 42 42 H 1.48502 * 110.00021 * 301.31695 * 21 19 18 43 43 H 1.07995 * 120.40044 * 180.02562 * 22 18 17 44 44 H 1.09002 * 113.61557 * 270.88569 * 24 12 11 45 45 H 1.09004 * 113.61501 * 139.97990 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0139 -0.6845 1.1855 6 6 1.6523 -1.9723 1.3383 7 8 0.9509 -2.5094 0.5039 8 7 2.0680 -2.6658 2.4165 9 6 1.6739 -4.0669 2.5829 10 1 1.4197 -4.5511 1.6401 11 6 2.6474 -4.8817 3.4510 12 6 1.4101 -5.5543 4.0685 13 1 1.4902 -5.7126 5.1441 14 7 0.9715 -6.7515 3.3471 15 6 0.2530 -7.7331 4.0075 16 7 -0.0248 -7.5765 5.2935 17 6 -0.7142 -8.4929 5.9527 18 6 -1.1365 -9.6316 5.2847 19 6 -1.9183 -10.7006 6.0039 20 8 -3.1925 -10.8619 5.3772 21 14 -2.1601 -10.2025 7.7827 22 6 -0.8239 -9.7660 3.9411 23 7 -0.1356 -8.8097 3.3401 24 6 0.6283 -4.2855 3.6892 25 1 -0.3634 0.5137 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6767 -1.7489 -1.2493 32 1 1.6767 -0.2073 -2.1393 33 1 3.1301 -0.7208 -1.2495 34 1 2.6276 -2.2369 3.0828 35 1 3.2757 -5.5644 2.8790 36 1 3.2137 -4.2757 4.1583 37 1 1.1845 -6.8564 2.4066 38 1 -0.9417 -8.3574 6.9997 39 1 -1.3707 -11.6420 5.9612 40 1 -3.7354 -10.0617 5.3783 41 1 -2.9293 -11.2488 8.5031 42 1 -0.8424 -10.0005 8.4371 43 1 -1.1385 -10.6408 3.3917 44 1 0.6426 -3.5165 4.4617 45 1 -0.3734 -4.4870 3.3096 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_13941012_12175864.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:37:13 Heat of formation + Delta-G solvation = -20.354390 kcal Electronic energy + Delta-G solvation = -27059.454334 eV Core-core repulsion = 23080.344108 eV Total energy + Delta-G solvation = -3979.110226 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.19846 -41.87139 -40.49550 -38.22292 -37.85478 -35.94943 -35.16832 -34.75318 -33.81433 -31.78794 -28.39294 -28.32038 -26.97985 -26.79687 -26.06368 -25.39316 -23.36871 -23.05350 -21.34756 -20.63497 -19.61200 -19.17750 -18.59452 -17.97978 -17.76602 -17.20558 -16.81778 -16.53690 -16.45005 -16.05806 -15.74121 -15.66429 -15.49911 -15.40630 -14.74903 -14.61576 -14.48846 -14.07296 -13.99952 -13.58392 -13.37537 -13.22160 -13.14632 -13.02993 -12.93170 -12.88556 -12.58806 -12.31594 -12.22487 -12.15035 -11.92350 -11.78523 -11.67297 -11.41483 -11.22830 -11.13356 -10.54996 -10.19162 -10.03884 -9.13202 -4.97796 0.03290 0.12222 1.15954 1.33231 1.64627 1.71387 1.74877 2.00024 2.76499 3.10791 3.15228 3.35807 3.50146 3.53510 3.63684 3.69762 3.72194 3.77000 3.77817 3.84958 3.92407 3.99543 4.25091 4.43897 4.54616 4.55940 4.58700 4.65846 4.71013 4.72578 4.74211 4.76399 4.82569 4.85676 4.87116 4.94709 4.97866 5.10399 5.23451 5.24587 5.30323 5.40449 5.57674 5.77210 6.00917 6.34658 6.39568 6.78531 7.23908 7.32692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.128 3.872 3 C -0.138 4.138 4 C -0.180 4.180 5 O -0.369 6.369 6 C 0.642 3.358 7 O -0.596 6.596 8 N -0.687 5.687 9 C 0.135 3.865 10 H 0.099 0.901 11 C -0.134 4.134 12 C 0.142 3.858 13 H 0.118 0.882 14 N -0.678 5.678 15 C 0.555 3.445 16 N -0.571 5.571 17 C 0.194 3.806 18 C -0.286 4.286 19 C -0.049 4.049 20 O -0.555 6.555 21 Si 0.770 3.230 22 C 0.211 3.789 23 N -0.592 5.592 24 C -0.158 4.158 25 H 0.062 0.938 26 H 0.086 0.914 27 H 0.062 0.938 28 H 0.070 0.930 29 H 0.098 0.902 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.086 0.914 33 H 0.062 0.938 34 H 0.420 0.580 35 H 0.088 0.912 36 H 0.130 0.870 37 H 0.417 0.583 38 H 0.190 0.810 39 H 0.113 0.887 40 H 0.395 0.605 41 H -0.297 1.297 42 H -0.280 1.280 43 H 0.181 0.819 44 H 0.112 0.888 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.274 3.911 3.444 5.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.091 3.909 3 C -0.195 4.195 4 C -0.237 4.237 5 O -0.283 6.283 6 C 0.395 3.605 7 O -0.487 6.487 8 N -0.347 5.347 9 C 0.031 3.969 10 H 0.117 0.883 11 C -0.173 4.173 12 C 0.035 3.965 13 H 0.136 0.864 14 N -0.314 5.314 15 C 0.198 3.802 16 N -0.294 5.294 17 C 0.027 3.973 18 C -0.294 4.294 19 C -0.160 4.160 20 O -0.363 6.363 21 Si 0.675 3.325 22 C 0.044 3.956 23 N -0.314 5.314 24 C -0.199 4.199 25 H 0.081 0.919 26 H 0.105 0.895 27 H 0.081 0.919 28 H 0.089 0.911 29 H 0.116 0.884 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.105 0.895 33 H 0.081 0.919 34 H 0.257 0.743 35 H 0.107 0.893 36 H 0.148 0.852 37 H 0.255 0.745 38 H 0.206 0.794 39 H 0.131 0.869 40 H 0.245 0.755 41 H -0.225 1.225 42 H -0.206 1.206 43 H 0.198 0.802 44 H 0.130 0.870 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.912 3.836 3.318 5.420 hybrid contribution -0.021 -1.060 -0.434 1.146 sum 1.891 2.775 2.885 4.427 Atomic orbital electron populations 1.22472 0.94147 1.03606 1.03506 1.22337 0.94378 0.92624 0.81536 1.21891 1.02489 0.90827 1.04256 1.22476 1.01664 1.02205 0.97391 1.86311 1.71509 1.23320 1.47204 1.18466 0.78635 0.80802 0.82550 1.90909 1.42271 1.70976 1.44564 1.44724 1.54890 1.12076 1.22963 1.22688 0.96727 0.78804 0.98672 0.88326 1.23778 0.96211 0.98213 0.99100 1.21649 0.94647 0.82226 0.97967 0.86436 1.43926 1.56804 1.17753 1.12893 1.19577 0.87911 0.86716 0.85983 1.67943 1.20337 1.33202 1.07904 1.23218 0.87333 0.86750 1.00007 1.21786 1.09192 1.00734 0.97685 1.24838 0.84991 0.98826 1.07383 1.86478 1.26999 1.41078 1.81726 0.93915 0.80718 0.86023 0.71803 1.23115 0.86157 0.94710 0.91603 1.67986 1.19000 1.03817 1.40590 1.24015 0.98477 0.98425 0.98966 0.91897 0.89529 0.91926 0.91112 0.88376 0.91124 0.91874 0.89534 0.91872 0.74259 0.89327 0.85225 0.74533 0.79380 0.86930 0.75548 1.22485 1.20634 0.80247 0.87012 0.92465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.64 8.37 71.98 0.60 -0.03 16 2 C 0.13 0.38 1.13 -10.79 -0.01 0.36 16 3 C -0.14 0.30 8.85 71.98 0.64 0.94 16 4 C -0.18 -0.61 8.37 71.98 0.60 -0.01 16 5 O -0.37 -1.89 9.94 -55.48 -0.55 -2.44 16 6 C 0.64 4.05 8.06 129.79 1.05 5.10 16 7 O -0.60 -7.26 11.48 19.79 0.23 -7.04 16 8 N -0.69 0.63 5.36 -567.60 -3.04 -2.41 16 9 C 0.14 -0.28 4.12 45.52 0.19 -0.10 16 10 H 0.10 0.23 7.47 -2.39 -0.02 0.21 16 11 C -0.13 0.95 7.58 31.12 0.24 1.19 16 12 C 0.14 -0.47 4.33 45.52 0.20 -0.27 16 13 H 0.12 -0.32 7.37 -2.38 -0.02 -0.34 16 14 N -0.68 -0.56 5.41 -327.92 -1.77 -2.34 16 15 C 0.55 2.77 8.43 261.48 2.20 4.97 16 16 N -0.57 -2.00 9.13 -197.98 -1.81 -3.80 16 17 C 0.19 -0.10 9.92 84.72 0.84 0.74 16 18 C -0.29 0.21 5.40 -19.69 -0.11 0.11 16 19 C -0.05 0.15 2.85 71.24 0.20 0.35 16 20 O -0.56 1.15 12.79 -148.98 -1.90 -0.75 16 21 Si 0.77 -3.63 29.87 68.60 2.05 -1.58 16 22 C 0.21 0.51 10.92 84.71 0.93 1.44 16 23 N -0.59 -3.67 10.46 -197.99 -2.07 -5.74 16 24 C -0.16 0.38 7.68 31.12 0.24 0.62 16 25 H 0.06 0.17 8.14 -2.39 -0.02 0.15 16 26 H 0.09 0.01 8.14 -2.38 -0.02 -0.01 16 27 H 0.06 0.57 5.88 -2.39 -0.01 0.56 16 28 H 0.07 -0.18 8.14 -2.39 -0.02 -0.20 16 29 H 0.10 -0.52 8.14 -2.39 -0.02 -0.54 16 30 H 0.07 -0.18 8.14 -2.39 -0.02 -0.20 16 31 H 0.06 0.56 5.88 -2.39 -0.01 0.54 16 32 H 0.09 0.00 8.14 -2.38 -0.02 -0.02 16 33 H 0.06 0.16 8.14 -2.38 -0.02 0.14 16 34 H 0.42 -2.61 8.84 -92.71 -0.82 -3.43 16 35 H 0.09 -0.61 8.14 -2.39 -0.02 -0.63 16 36 H 0.13 -1.48 8.12 -2.39 -0.02 -1.50 16 37 H 0.42 -0.03 8.82 -92.71 -0.82 -0.84 16 38 H 0.19 -1.19 5.04 -2.91 -0.01 -1.21 16 39 H 0.11 -0.28 7.96 -2.39 -0.02 -0.30 16 40 H 0.39 -3.74 8.70 -74.06 -0.64 -4.39 16 41 H -0.30 -0.95 7.11 99.48 0.71 -0.24 16 42 H -0.28 0.14 7.11 99.48 0.71 0.85 16 43 H 0.18 -0.14 8.06 -2.91 -0.02 -0.16 16 44 H 0.11 -0.56 8.14 -2.39 -0.02 -0.58 16 45 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 Total: 0.00 -20.42 368.20 -2.27 -22.70 By element: Atomic # 1 Polarization: -10.79 SS G_CDS: -1.20 Total: -12.00 kcal Atomic # 6 Polarization: 7.61 SS G_CDS: 7.80 Total: 15.41 kcal Atomic # 7 Polarization: -5.60 SS G_CDS: -8.69 Total: -14.30 kcal Atomic # 8 Polarization: -8.00 SS G_CDS: -2.23 Total: -10.23 kcal Atomic # 14 Polarization: -3.63 SS G_CDS: 2.05 Total: -1.58 kcal Total: -20.42 -2.27 -22.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_13941012_12175864.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.342 kcal (2) G-P(sol) polarization free energy of solvation -20.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds