Wall clock time and date at job start Mon Mar 8 2021 04:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.47123 * 2 1 4 4 C 1.53004 * 109.47201 * 240.00206 * 2 1 3 5 5 O 1.45201 * 109.47345 * 120.00224 * 2 1 3 6 6 C 1.34630 * 117.00046 * 59.99605 * 5 2 1 7 7 O 1.21516 * 120.00250 * 0.02562 * 6 5 2 8 8 N 1.34784 * 120.00065 * 180.02562 * 6 5 2 9 9 C 1.46493 * 119.99864 * 179.72923 * 8 6 5 10 10 H 1.09000 * 112.85483 * 334.66378 * 9 8 6 11 11 C 1.53777 * 113.61833 * 105.86275 * 9 8 6 12 12 C 1.54054 * 86.98542 * 89.15903 * 11 9 8 13 13 H 1.09000 * 113.68870 * 270.87285 * 12 11 9 14 14 N 1.46501 * 113.61929 * 139.98409 * 12 11 9 15 15 C 1.38998 * 120.00400 * 107.50095 * 14 12 11 16 16 N 1.32401 * 119.70899 * 179.72512 * 15 14 12 17 17 C 1.31970 * 121.62208 * 179.71844 * 16 15 14 18 18 C 1.38017 * 120.85728 * 0.56034 * 17 16 15 19 19 C 1.50700 * 120.33714 * 179.74998 * 18 17 16 20 20 O 1.42903 * 109.47205 * 244.98159 * 19 18 17 21 21 Si 1.86299 * 109.46920 * 4.98282 * 19 18 17 22 22 C 1.38884 * 119.33092 * 359.72875 * 18 17 16 23 23 C 1.38296 * 118.50588 * 359.97438 * 22 18 17 24 24 C 1.53777 * 87.07820 * 25.43361 * 12 11 9 25 25 H 1.09004 * 109.46522 * 299.99848 * 1 2 3 26 26 H 1.08993 * 109.46822 * 59.99709 * 1 2 3 27 27 H 1.08997 * 109.46645 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47093 * 179.97438 * 3 2 1 29 29 H 1.09003 * 109.47004 * 299.99872 * 3 2 1 30 30 H 1.08997 * 109.47133 * 59.99999 * 3 2 1 31 31 H 1.09006 * 109.46751 * 299.99920 * 4 2 1 32 32 H 1.08994 * 109.46964 * 59.99535 * 4 2 1 33 33 H 1.08998 * 109.47138 * 180.02562 * 4 2 1 34 34 H 0.97000 * 119.99339 * 0.02562 * 8 6 5 35 35 H 1.09001 * 113.61733 * 203.66099 * 11 9 8 36 36 H 1.09003 * 113.61313 * 334.56504 * 11 9 8 37 37 H 0.97004 * 119.99549 * 287.50728 * 14 12 11 38 38 H 1.08002 * 119.57311 * 180.29429 * 17 16 15 39 39 H 1.08995 * 109.47260 * 124.97879 * 19 18 17 40 40 H 0.96697 * 113.99785 * 59.99503 * 20 19 18 41 41 H 1.48490 * 110.00433 * 58.68154 * 21 19 18 42 42 H 1.48501 * 109.99992 * 180.02562 * 21 19 18 43 43 H 1.07997 * 120.74734 * 180.02562 * 22 18 17 44 44 H 1.08005 * 120.45657 * 179.97438 * 23 22 18 45 45 H 1.08998 * 113.61800 * 220.02412 * 24 12 11 46 46 H 1.08997 * 113.68973 * 89.12516 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 8 2.0141 -0.6845 1.1855 6 6 1.6523 -1.9723 1.3383 7 8 0.9516 -2.5097 0.5036 8 7 2.0673 -2.6654 2.4172 9 6 1.6688 -4.0649 2.5864 10 1 0.7382 -4.3052 2.0722 11 6 2.8023 -5.0663 2.3084 12 6 3.1727 -4.9360 3.7981 13 1 3.8806 -4.1334 4.0048 14 7 3.5546 -6.2057 4.4212 15 6 4.8847 -6.4498 4.7428 16 7 5.2225 -7.5971 5.3108 17 6 6.4743 -7.8705 5.6269 18 6 7.4810 -6.9579 5.3849 19 6 8.9057 -7.2800 5.7558 20 8 9.3452 -6.3856 6.7800 21 14 9.0041 -9.0332 6.3781 22 6 7.1679 -5.7398 4.7957 23 6 5.8485 -5.4840 4.4699 24 6 1.7067 -4.5439 4.0472 25 1 -0.3632 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3632 -1.0277 0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 -1.7489 -1.2493 32 1 1.6767 -0.2074 -2.1392 33 1 3.1300 -0.7216 -1.2490 34 1 2.6264 -2.2363 3.0836 35 1 2.4493 -6.0597 2.0316 36 1 3.5666 -4.6838 1.6320 37 1 2.8792 -6.8762 4.6092 38 1 6.7135 -8.8189 6.0849 39 1 9.5434 -7.1695 4.8788 40 1 8.8219 -6.4299 7.5920 41 1 8.5198 -9.9709 5.3335 42 1 10.4040 -9.3631 6.7478 43 1 7.9377 -5.0092 4.5957 44 1 5.5696 -4.5469 4.0110 45 1 1.5871 -3.7400 4.7735 46 1 1.0536 -5.3938 4.2451 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_13941012_13915762.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:37:17 Heat of formation + Delta-G solvation = -37.346343 kcal Electronic energy + Delta-G solvation = -27012.585784 eV Core-core repulsion = 23098.164642 eV Total energy + Delta-G solvation = -3914.421142 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.01467 -41.45108 -40.38071 -38.17191 -37.74958 -35.89316 -35.15716 -33.71356 -33.24138 -31.10049 -28.38869 -28.32055 -26.88976 -26.80107 -25.31655 -24.79003 -23.56945 -22.46223 -21.20649 -20.55375 -19.42107 -18.71903 -18.45248 -17.79272 -17.46951 -17.20445 -16.66089 -16.48691 -16.24542 -15.97124 -15.73940 -15.57037 -15.36765 -15.23551 -14.63151 -14.40521 -14.29564 -14.05357 -13.94676 -13.55983 -13.54979 -13.37625 -13.15583 -12.94800 -12.90990 -12.88491 -12.56941 -12.34977 -12.31896 -12.16275 -12.09397 -11.65868 -11.41759 -11.15327 -11.05453 -10.75489 -10.42794 -10.38067 -10.25192 -8.68768 -4.99377 0.22227 0.39715 1.09100 1.34166 1.64400 1.69790 1.97667 2.12001 2.81381 3.06817 3.33834 3.47140 3.55403 3.62829 3.71998 3.76848 3.79344 3.81711 3.90811 3.92404 3.99198 4.09886 4.35366 4.41958 4.51073 4.55243 4.59396 4.63951 4.68493 4.72457 4.74661 4.75022 4.80327 4.85878 4.86757 4.95568 4.96090 5.01225 5.11693 5.25097 5.26378 5.31467 5.39188 5.52458 5.59266 6.03561 6.33943 6.55564 6.80577 7.14536 7.30316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.128 3.872 3 C -0.138 4.138 4 C -0.181 4.181 5 O -0.368 6.368 6 C 0.646 3.354 7 O -0.592 6.592 8 N -0.683 5.683 9 C 0.137 3.863 10 H 0.099 0.901 11 C -0.165 4.165 12 C 0.134 3.866 13 H 0.120 0.880 14 N -0.706 5.706 15 C 0.396 3.604 16 N -0.564 5.564 17 C 0.148 3.852 18 C -0.238 4.238 19 C -0.054 4.054 20 O -0.556 6.556 21 Si 0.765 3.235 22 C -0.014 4.014 23 C -0.243 4.243 24 C -0.133 4.133 25 H 0.063 0.937 26 H 0.086 0.914 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.098 0.902 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.086 0.914 33 H 0.061 0.939 34 H 0.418 0.582 35 H 0.098 0.902 36 H 0.067 0.933 37 H 0.410 0.590 38 H 0.169 0.831 39 H 0.106 0.894 40 H 0.394 0.606 41 H -0.289 1.289 42 H -0.297 1.297 43 H 0.144 0.856 44 H 0.149 0.851 45 H 0.098 0.902 46 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.506 3.132 2.923 4.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.092 3.908 3 C -0.195 4.195 4 C -0.238 4.238 5 O -0.283 6.283 6 C 0.400 3.600 7 O -0.483 6.483 8 N -0.343 5.343 9 C 0.032 3.968 10 H 0.117 0.883 11 C -0.206 4.206 12 C 0.028 3.972 13 H 0.138 0.862 14 N -0.337 5.337 15 C 0.160 3.840 16 N -0.281 5.281 17 C -0.009 4.009 18 C -0.243 4.243 19 C -0.165 4.165 20 O -0.364 6.364 21 Si 0.672 3.328 22 C -0.039 4.039 23 C -0.267 4.267 24 C -0.172 4.172 25 H 0.082 0.918 26 H 0.105 0.895 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.116 0.884 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.105 0.895 33 H 0.080 0.920 34 H 0.255 0.745 35 H 0.117 0.883 36 H 0.085 0.915 37 H 0.246 0.754 38 H 0.186 0.814 39 H 0.123 0.877 40 H 0.244 0.756 41 H -0.216 1.216 42 H -0.225 1.225 43 H 0.161 0.839 44 H 0.166 0.834 45 H 0.116 0.884 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -1.777 1.898 1.995 3.277 hybrid contribution 0.691 0.665 -0.647 1.156 sum -1.087 2.562 1.347 3.092 Atomic orbital electron populations 1.22477 0.93985 1.03733 1.03557 1.22346 0.94481 0.92537 0.81434 1.21896 1.02463 0.90887 1.04277 1.22479 1.01621 1.02263 0.97421 1.86308 1.71490 1.23227 1.47260 1.18321 0.78528 0.80720 0.82468 1.90918 1.42194 1.71026 1.44134 1.44344 1.54987 1.11794 1.23156 1.21616 0.98632 0.78049 0.98493 0.88294 1.24097 0.98609 1.00289 0.97565 1.22791 0.96768 0.85920 0.91716 0.86239 1.44562 1.04136 1.19392 1.65625 1.18681 0.86843 0.89185 0.89340 1.67158 1.21511 1.20638 1.18807 1.22452 0.86600 0.98179 0.93696 1.21040 0.97333 0.97515 1.08454 1.24834 0.92009 1.05818 0.93836 1.86457 1.59271 1.63603 1.27088 0.93901 0.80464 0.72369 0.86053 1.21401 0.96027 0.95532 0.90968 1.21661 0.93159 1.01839 1.10064 1.23702 0.95572 1.03009 0.94940 0.91824 0.89544 0.91731 0.91184 0.88385 0.91082 0.91776 0.89534 0.91973 0.74466 0.88344 0.91460 0.75357 0.81448 0.87659 0.75594 1.21590 1.22474 0.83865 0.83359 0.88377 0.86438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.41 8.37 71.98 0.60 0.19 16 2 C 0.13 0.25 1.13 -10.79 -0.01 0.24 16 3 C -0.14 0.40 8.85 71.98 0.64 1.04 16 4 C -0.18 -0.46 8.37 71.98 0.60 0.14 16 5 O -0.37 -1.44 9.94 -55.39 -0.55 -1.99 16 6 C 0.65 3.08 8.06 129.79 1.05 4.13 16 7 O -0.59 -6.22 11.50 19.79 0.23 -5.99 16 8 N -0.68 1.66 5.27 -567.60 -2.99 -1.33 16 9 C 0.14 -0.55 4.29 45.52 0.20 -0.36 16 10 H 0.10 -0.03 7.50 -2.39 -0.02 -0.05 16 11 C -0.17 0.68 7.70 31.21 0.24 0.92 16 12 C 0.13 -0.91 3.92 45.61 0.18 -0.73 16 13 H 0.12 -1.02 6.10 -2.39 -0.01 -1.04 16 14 N -0.71 2.06 5.53 -321.60 -1.78 0.28 16 15 C 0.40 0.76 7.65 133.07 1.02 1.78 16 16 N -0.56 -2.61 10.39 -193.26 -2.01 -4.62 16 17 C 0.15 0.26 9.84 84.62 0.83 1.09 16 18 C -0.24 -0.18 5.36 -19.76 -0.11 -0.28 16 19 C -0.05 0.03 2.82 71.24 0.20 0.23 16 20 O -0.56 0.09 12.84 -148.98 -1.91 -1.83 16 21 Si 0.77 -1.28 29.83 68.60 2.05 0.77 16 22 C -0.01 -0.01 9.83 22.44 0.22 0.21 16 23 C -0.24 0.01 9.29 22.50 0.21 0.22 16 24 C -0.13 1.19 7.57 31.12 0.24 1.42 16 25 H 0.06 0.09 8.14 -2.38 -0.02 0.07 16 26 H 0.09 -0.08 8.14 -2.39 -0.02 -0.10 16 27 H 0.06 0.48 5.88 -2.39 -0.01 0.47 16 28 H 0.07 -0.21 8.14 -2.39 -0.02 -0.23 16 29 H 0.10 -0.58 8.14 -2.39 -0.02 -0.60 16 30 H 0.07 -0.23 8.14 -2.39 -0.02 -0.25 16 31 H 0.06 0.50 5.88 -2.38 -0.01 0.49 16 32 H 0.09 -0.06 8.14 -2.39 -0.02 -0.08 16 33 H 0.06 0.12 8.14 -2.39 -0.02 0.10 16 34 H 0.42 -3.04 8.82 -92.71 -0.82 -3.86 16 35 H 0.10 -0.34 8.14 -2.39 -0.02 -0.36 16 36 H 0.07 -0.09 8.14 -2.39 -0.02 -0.11 16 37 H 0.41 -1.57 8.85 -92.71 -0.82 -2.40 16 38 H 0.17 -0.43 4.91 -2.91 -0.01 -0.45 16 39 H 0.11 0.05 7.96 -2.39 -0.02 0.03 16 40 H 0.39 -3.12 8.70 -74.06 -0.64 -3.76 16 41 H -0.29 -1.08 7.11 99.48 0.71 -0.37 16 42 H -0.30 -1.67 7.11 99.48 0.71 -0.96 16 43 H 0.14 -0.24 8.06 -2.91 -0.02 -0.27 16 44 H 0.15 -0.63 6.04 -2.91 -0.02 -0.65 16 45 H 0.10 -1.02 8.14 -2.39 -0.02 -1.04 16 46 H 0.12 -1.22 8.12 -2.39 -0.02 -1.24 16 Total: 0.00 -19.03 370.80 -2.08 -21.11 By element: Atomic # 1 Polarization: -15.43 SS G_CDS: -1.22 Total: -16.65 kcal Atomic # 6 Polarization: 4.14 SS G_CDS: 6.10 Total: 10.24 kcal Atomic # 7 Polarization: 1.11 SS G_CDS: -6.78 Total: -5.67 kcal Atomic # 8 Polarization: -7.57 SS G_CDS: -2.24 Total: -9.81 kcal Atomic # 14 Polarization: -1.28 SS G_CDS: 2.05 Total: 0.77 kcal Total: -19.03 -2.08 -21.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_13941012_13915762.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.235 kcal (2) G-P(sol) polarization free energy of solvation -19.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds