Wall clock time and date at job start Mon Mar 8 2021 04:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52998 * 109.47176 * 2 1 4 4 C 1.52999 * 109.47394 * 239.99775 * 2 1 3 5 5 O 1.45204 * 109.47292 * 119.99407 * 2 1 3 6 6 C 1.34644 * 116.99534 * 60.00303 * 5 2 1 7 7 O 1.21512 * 120.00160 * 0.02562 * 6 5 2 8 8 N 1.34775 * 119.99572 * 180.02562 * 6 5 2 9 9 C 1.46506 * 119.99693 * 180.02562 * 8 6 5 10 10 H 1.08996 * 112.84606 * 336.18925 * 9 8 6 11 11 C 1.53775 * 113.61531 * 107.50126 * 9 8 6 12 12 C 1.53775 * 87.08097 * 89.11408 * 11 9 8 13 13 H 1.09000 * 113.61796 * 270.87964 * 12 11 9 14 14 N 1.46509 * 113.69102 * 139.99302 * 12 11 9 15 15 C 1.38605 * 120.00196 * 107.46145 * 14 12 11 16 16 N 1.29690 * 124.94865 * 0.02971 * 15 14 12 17 17 C 1.32123 * 116.86543 * 179.97438 * 16 15 14 18 18 C 1.33330 * 114.58077 * 359.97438 * 17 16 15 19 19 C 1.50702 * 125.95390 * 180.02562 * 18 17 16 20 20 O 1.42903 * 109.46821 * 300.00089 * 19 18 17 21 21 Si 1.86291 * 109.47153 * 180.02562 * 19 18 17 22 22 S 1.70966 * 124.95135 * 179.72050 * 15 14 12 23 23 C 1.53777 * 87.08356 * 25.43295 * 12 11 9 24 24 H 1.08994 * 109.47537 * 299.99934 * 1 2 3 25 25 H 1.08997 * 109.47190 * 60.00735 * 1 2 3 26 26 H 1.09006 * 109.47064 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47387 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.46927 * 299.99705 * 3 2 1 29 29 H 1.08996 * 109.47338 * 59.99571 * 3 2 1 30 30 H 1.09004 * 109.46776 * 299.99824 * 4 2 1 31 31 H 1.09002 * 109.47140 * 60.00030 * 4 2 1 32 32 H 1.09000 * 109.47131 * 179.97438 * 4 2 1 33 33 H 0.97000 * 120.00190 * 359.97438 * 8 6 5 34 34 H 1.09003 * 113.61160 * 203.66277 * 11 9 8 35 35 H 1.09002 * 113.61807 * 334.56510 * 11 9 8 36 36 H 0.97005 * 119.99727 * 287.46702 * 14 12 11 37 37 H 1.07999 * 122.70858 * 179.97438 * 17 16 15 38 38 H 1.08998 * 109.46592 * 59.99947 * 19 18 17 39 39 H 0.96692 * 113.99861 * 179.97438 * 20 19 18 40 40 H 1.48498 * 110.00120 * 298.68213 * 21 19 18 41 41 H 1.48498 * 110.00114 * 59.99896 * 21 19 18 42 42 H 1.09003 * 113.61538 * 220.02028 * 23 12 11 43 43 H 1.08996 * 113.69047 * 89.12574 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6522 -1.9723 1.3384 7 8 0.9516 -2.5097 0.5037 8 7 2.0672 -2.6653 2.4173 9 6 1.6740 -4.0668 2.5833 10 1 0.7601 -4.3166 2.0445 11 6 2.8228 -5.0611 2.3459 12 6 3.1493 -4.9199 3.8420 13 1 3.8452 -4.1105 4.0626 14 7 3.5231 -6.1824 4.4846 15 6 4.8417 -6.4134 4.8439 16 7 5.8191 -5.5816 4.6576 17 6 7.0161 -5.9665 5.0634 18 6 7.0507 -7.1785 5.6180 19 6 8.2744 -7.8660 6.1664 20 8 9.2397 -8.0231 5.1244 21 14 7.8005 -9.5408 6.8306 22 16 5.4153 -7.8334 5.6039 23 6 1.6742 -4.5373 4.0474 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1299 1.4425 0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9563 0.8899 30 1 1.6767 -1.7490 -1.2491 31 1 1.6767 -0.2075 -2.1392 32 1 3.1300 -0.7209 -1.2494 33 1 2.6268 -2.2363 3.0835 34 1 2.4856 -6.0588 2.0648 35 1 3.6044 -4.6770 1.6903 36 1 2.8477 -6.8566 4.6585 37 1 7.8956 -5.3492 4.9546 38 1 8.7006 -7.2638 6.9687 39 1 10.0553 -8.4591 5.4063 40 1 6.8207 -9.3900 7.9363 41 1 7.2184 -10.3712 5.7459 42 1 1.5283 -3.7302 4.7654 43 1 1.0219 -5.3908 4.2317 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_13941012_15704118.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:37:22 Heat of formation + Delta-G solvation = -28.396003 kcal Electronic energy + Delta-G solvation = -25482.234136 eV Core-core repulsion = 21657.353357 eV Total energy + Delta-G solvation = -3824.880779 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 328.129 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.89473 -40.96965 -40.19603 -38.03412 -37.70270 -35.87504 -35.06483 -33.47730 -31.30572 -28.31286 -28.27293 -27.09689 -26.91006 -25.83973 -24.26648 -23.47814 -21.24296 -21.03679 -20.56861 -19.38187 -19.20512 -18.47571 -17.68411 -17.50935 -17.12965 -16.81693 -16.60079 -15.98245 -15.75866 -15.49951 -15.39862 -15.29235 -14.87036 -14.57500 -14.36469 -14.27370 -14.06861 -13.75208 -13.43968 -13.24409 -13.08993 -12.84452 -12.81189 -12.78969 -12.51279 -12.42371 -12.24370 -12.19160 -12.05839 -11.75683 -11.28577 -11.13168 -10.96837 -10.63752 -10.34423 -10.21830 -10.14678 -8.75954 -5.22518 -0.05830 0.08092 0.64698 1.14578 1.21978 1.56705 1.86538 1.91925 2.01425 2.08924 3.07591 3.19038 3.33858 3.43163 3.62934 3.70799 3.79104 3.84837 3.85048 3.97880 3.98656 4.36982 4.40734 4.46536 4.48231 4.58080 4.63342 4.64635 4.69079 4.75551 4.79749 4.82668 4.90449 4.91999 4.94726 5.09155 5.12430 5.31250 5.37994 5.47487 5.60355 5.80152 5.99322 6.38819 6.57870 6.97547 7.41766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.137 3.863 3 C -0.142 4.142 4 C -0.185 4.185 5 O -0.364 6.364 6 C 0.654 3.346 7 O -0.564 6.564 8 N -0.696 5.696 9 C 0.143 3.857 10 H 0.116 0.884 11 C -0.166 4.166 12 C 0.139 3.861 13 H 0.119 0.881 14 N -0.682 5.682 15 C 0.329 3.671 16 N -0.547 5.547 17 C 0.123 3.877 18 C -0.261 4.261 19 C -0.017 4.017 20 O -0.545 6.545 21 Si 0.668 3.332 22 S 0.069 5.931 23 C -0.154 4.154 24 H 0.060 0.940 25 H 0.072 0.928 26 H 0.087 0.913 27 H 0.067 0.933 28 H 0.082 0.918 29 H 0.067 0.933 30 H 0.087 0.913 31 H 0.072 0.928 32 H 0.060 0.940 33 H 0.408 0.592 34 H 0.098 0.902 35 H 0.080 0.920 36 H 0.415 0.585 37 H 0.179 0.821 38 H 0.082 0.918 39 H 0.383 0.617 40 H -0.242 1.242 41 H -0.239 1.239 42 H 0.086 0.914 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.502 -0.795 3.711 4.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.100 3.900 3 C -0.199 4.199 4 C -0.242 4.242 5 O -0.279 6.279 6 C 0.408 3.592 7 O -0.453 6.453 8 N -0.355 5.355 9 C 0.037 3.963 10 H 0.134 0.866 11 C -0.207 4.207 12 C 0.031 3.969 13 H 0.137 0.863 14 N -0.320 5.320 15 C -0.041 4.041 16 N -0.272 5.272 17 C -0.027 4.027 18 C -0.383 4.383 19 C -0.131 4.131 20 O -0.352 6.352 21 Si 0.567 3.433 22 S 0.318 5.682 23 C -0.193 4.193 24 H 0.079 0.921 25 H 0.091 0.909 26 H 0.106 0.894 27 H 0.086 0.914 28 H 0.101 0.899 29 H 0.086 0.914 30 H 0.106 0.894 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.243 0.757 34 H 0.116 0.884 35 H 0.099 0.901 36 H 0.253 0.747 37 H 0.195 0.805 38 H 0.100 0.900 39 H 0.231 0.769 40 H -0.166 1.166 41 H -0.163 1.163 42 H 0.105 0.895 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -0.596 -1.513 3.040 3.447 hybrid contribution 0.644 0.955 0.052 1.154 sum 0.049 -0.557 3.092 3.142 Atomic orbital electron populations 1.22522 0.93821 1.05045 1.02738 1.22129 0.94448 0.91569 0.81818 1.21881 1.02384 0.92318 1.03346 1.22527 1.01665 1.03443 0.96532 1.86314 1.71438 1.23330 1.46782 1.18040 0.78561 0.80599 0.82026 1.90921 1.40920 1.70506 1.42917 1.44354 1.55569 1.11561 1.23968 1.21564 0.99113 0.78626 0.96990 0.86636 1.24055 0.98999 1.00355 0.97252 1.22731 0.95627 0.86389 0.92123 0.86337 1.44068 1.02945 1.20028 1.64974 1.23844 0.90808 0.93599 0.95835 1.66453 0.99005 1.32821 1.28908 1.21339 0.94158 0.93216 0.94007 1.24287 0.96166 0.99718 1.18145 1.23681 0.88202 1.08356 0.92838 1.86514 1.29394 1.83263 1.36009 0.95136 0.87506 0.78844 0.81766 1.84102 1.03393 1.20229 1.60499 1.23823 0.96349 1.02567 0.96546 0.92099 0.90902 0.89436 0.91358 0.89900 0.91381 0.89421 0.90904 0.92081 0.75710 0.88379 0.90129 0.74725 0.80456 0.90039 0.76884 1.16620 1.16272 0.89515 0.87660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.28 8.37 37.15 0.31 0.03 16 2 C 0.14 0.22 1.13 -90.63 -0.10 0.12 16 3 C -0.14 0.05 8.85 37.16 0.33 0.38 16 4 C -0.18 -0.32 8.37 37.16 0.31 -0.01 16 5 O -0.36 -1.01 9.94 -40.34 -0.40 -1.41 16 6 C 0.65 1.97 8.06 54.05 0.44 2.41 16 7 O -0.56 -2.95 11.48 -19.28 -0.22 -3.17 16 8 N -0.70 -0.08 5.27 -57.93 -0.31 -0.38 16 9 C 0.14 -0.14 4.32 -67.12 -0.29 -0.43 16 10 H 0.12 0.01 7.46 -51.93 -0.39 -0.38 16 11 C -0.17 0.11 7.68 -25.92 -0.20 -0.08 16 12 C 0.14 -0.16 4.23 -67.12 -0.28 -0.44 16 13 H 0.12 0.01 7.66 -51.93 -0.40 -0.39 16 14 N -0.68 0.32 5.51 -54.99 -0.30 0.01 16 15 C 0.33 0.79 8.09 -87.68 -0.71 0.08 16 16 N -0.55 -2.14 9.83 -15.21 -0.15 -2.28 16 17 C 0.12 0.40 11.22 -19.14 -0.21 0.19 16 18 C -0.26 -0.71 5.78 -36.02 -0.21 -0.92 16 19 C -0.02 0.00 2.98 36.01 0.11 0.11 16 20 O -0.55 -0.11 12.84 -35.23 -0.45 -0.57 16 21 Si 0.67 -0.50 31.05 -169.99 -5.28 -5.78 16 22 S 0.07 0.16 20.57 -107.50 -2.21 -2.05 16 23 C -0.15 0.46 7.58 -25.92 -0.20 0.26 16 24 H 0.06 0.07 8.14 -51.93 -0.42 -0.35 16 25 H 0.07 0.01 8.14 -51.93 -0.42 -0.41 16 26 H 0.09 0.31 5.88 -51.93 -0.31 0.00 16 27 H 0.07 -0.03 8.14 -51.93 -0.42 -0.45 16 28 H 0.08 -0.14 8.14 -51.93 -0.42 -0.56 16 29 H 0.07 -0.04 8.14 -51.93 -0.42 -0.46 16 30 H 0.09 0.34 5.88 -51.93 -0.31 0.03 16 31 H 0.07 0.02 8.14 -51.93 -0.42 -0.40 16 32 H 0.06 0.10 8.14 -51.93 -0.42 -0.32 16 33 H 0.41 -0.63 8.81 -40.82 -0.36 -0.99 16 34 H 0.10 -0.12 8.14 -51.93 -0.42 -0.54 16 35 H 0.08 0.09 8.14 -51.93 -0.42 -0.33 16 36 H 0.42 -1.11 8.85 -40.82 -0.36 -1.47 16 37 H 0.18 0.28 8.06 -52.49 -0.42 -0.14 16 38 H 0.08 -0.15 7.96 -51.93 -0.41 -0.57 16 39 H 0.38 -1.91 8.74 45.56 0.40 -1.51 16 40 H -0.24 -0.36 7.11 56.52 0.40 0.04 16 41 H -0.24 -0.60 7.11 56.52 0.40 -0.20 16 42 H 0.09 -0.28 8.14 -51.93 -0.42 -0.70 16 43 H 0.11 -0.46 8.12 -51.93 -0.42 -0.88 16 LS Contribution 366.23 15.07 5.52 5.52 Total: 0.00 -8.49 366.23 -10.92 -19.41 By element: Atomic # 1 Polarization: -4.58 SS G_CDS: -6.40 Total: -10.98 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: -0.71 Total: 1.69 kcal Atomic # 7 Polarization: -1.90 SS G_CDS: -0.76 Total: -2.65 kcal Atomic # 8 Polarization: -4.07 SS G_CDS: -1.07 Total: -5.15 kcal Atomic # 14 Polarization: -0.50 SS G_CDS: -5.28 Total: -5.78 kcal Atomic # 16 Polarization: 0.16 SS G_CDS: -2.21 Total: -2.05 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -8.49 -10.92 -19.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_13941012_15704118.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.990 kcal (2) G-P(sol) polarization free energy of solvation -8.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds