Wall clock time and date at job start Mon Mar 8 2021 04:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52998 * 109.47176 * 2 1 4 4 C 1.52999 * 109.47394 * 239.99775 * 2 1 3 5 5 O 1.45204 * 109.47292 * 119.99407 * 2 1 3 6 6 C 1.34644 * 116.99534 * 60.00303 * 5 2 1 7 7 O 1.21512 * 120.00160 * 0.02562 * 6 5 2 8 8 N 1.34775 * 119.99572 * 180.02562 * 6 5 2 9 9 C 1.46506 * 119.99693 * 180.02562 * 8 6 5 10 10 H 1.08996 * 112.84606 * 336.18925 * 9 8 6 11 11 C 1.53775 * 113.61531 * 107.50126 * 9 8 6 12 12 C 1.53775 * 87.08097 * 89.11408 * 11 9 8 13 13 H 1.09000 * 113.61796 * 270.87964 * 12 11 9 14 14 N 1.46509 * 113.69102 * 139.99302 * 12 11 9 15 15 C 1.38605 * 120.00196 * 107.46145 * 14 12 11 16 16 N 1.29690 * 124.94865 * 0.02971 * 15 14 12 17 17 C 1.32123 * 116.86543 * 179.97438 * 16 15 14 18 18 C 1.33330 * 114.58077 * 359.97438 * 17 16 15 19 19 C 1.50702 * 125.95390 * 180.02562 * 18 17 16 20 20 O 1.42903 * 109.46821 * 300.00089 * 19 18 17 21 21 Si 1.86291 * 109.47153 * 180.02562 * 19 18 17 22 22 S 1.70966 * 124.95135 * 179.72050 * 15 14 12 23 23 C 1.53777 * 87.08356 * 25.43295 * 12 11 9 24 24 H 1.08994 * 109.47537 * 299.99934 * 1 2 3 25 25 H 1.08997 * 109.47190 * 60.00735 * 1 2 3 26 26 H 1.09006 * 109.47064 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47387 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.46927 * 299.99705 * 3 2 1 29 29 H 1.08996 * 109.47338 * 59.99571 * 3 2 1 30 30 H 1.09004 * 109.46776 * 299.99824 * 4 2 1 31 31 H 1.09002 * 109.47140 * 60.00030 * 4 2 1 32 32 H 1.09000 * 109.47131 * 179.97438 * 4 2 1 33 33 H 0.97000 * 120.00190 * 359.97438 * 8 6 5 34 34 H 1.09003 * 113.61160 * 203.66277 * 11 9 8 35 35 H 1.09002 * 113.61807 * 334.56510 * 11 9 8 36 36 H 0.97005 * 119.99727 * 287.46702 * 14 12 11 37 37 H 1.07999 * 122.70858 * 179.97438 * 17 16 15 38 38 H 1.08998 * 109.46592 * 59.99947 * 19 18 17 39 39 H 0.96692 * 113.99861 * 179.97438 * 20 19 18 40 40 H 1.48498 * 110.00120 * 298.68213 * 21 19 18 41 41 H 1.48498 * 110.00114 * 59.99896 * 21 19 18 42 42 H 1.09003 * 113.61538 * 220.02028 * 23 12 11 43 43 H 1.08996 * 113.69047 * 89.12574 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6522 -1.9723 1.3384 7 8 0.9516 -2.5097 0.5037 8 7 2.0672 -2.6653 2.4173 9 6 1.6740 -4.0668 2.5833 10 1 0.7601 -4.3166 2.0445 11 6 2.8228 -5.0611 2.3459 12 6 3.1493 -4.9199 3.8420 13 1 3.8452 -4.1105 4.0626 14 7 3.5231 -6.1824 4.4846 15 6 4.8417 -6.4134 4.8439 16 7 5.8191 -5.5816 4.6576 17 6 7.0161 -5.9665 5.0634 18 6 7.0507 -7.1785 5.6180 19 6 8.2744 -7.8660 6.1664 20 8 9.2397 -8.0231 5.1244 21 14 7.8005 -9.5408 6.8306 22 16 5.4153 -7.8334 5.6039 23 6 1.6742 -4.5373 4.0474 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1299 1.4425 0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9563 0.8899 30 1 1.6767 -1.7490 -1.2491 31 1 1.6767 -0.2075 -2.1392 32 1 3.1300 -0.7209 -1.2494 33 1 2.6268 -2.2363 3.0835 34 1 2.4856 -6.0588 2.0648 35 1 3.6044 -4.6770 1.6903 36 1 2.8477 -6.8566 4.6585 37 1 7.8956 -5.3492 4.9546 38 1 8.7006 -7.2638 6.9687 39 1 10.0553 -8.4591 5.4063 40 1 6.8207 -9.3900 7.9363 41 1 7.2184 -10.3712 5.7459 42 1 1.5283 -3.7302 4.7654 43 1 1.0219 -5.3908 4.2317 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_13941012_15704118.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:37:21 Heat of formation + Delta-G solvation = -29.372751 kcal Electronic energy + Delta-G solvation = -25482.276491 eV Core-core repulsion = 21657.353357 eV Total energy + Delta-G solvation = -3824.923134 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 328.129 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.02714 -41.06151 -40.26787 -38.13845 -37.72938 -35.98046 -35.18457 -33.55310 -31.38470 -28.40591 -28.33988 -27.14718 -26.83781 -25.89044 -24.37139 -23.56170 -21.35923 -21.08085 -20.66320 -19.45066 -19.35740 -18.43991 -17.75880 -17.62470 -17.28267 -16.87375 -16.60566 -16.08665 -15.84783 -15.63825 -15.46438 -15.39275 -14.90463 -14.66433 -14.45997 -14.33783 -14.07576 -13.64315 -13.43093 -13.21893 -13.13668 -12.96037 -12.90800 -12.85808 -12.61848 -12.54317 -12.36722 -12.24895 -12.11968 -11.73578 -11.44141 -11.18946 -11.15085 -10.78314 -10.43400 -10.29718 -10.21985 -8.84927 -5.19102 -0.20259 -0.05071 0.50042 1.06479 1.23695 1.56847 1.66006 1.84865 1.92200 2.07292 3.03432 3.26453 3.40939 3.49383 3.58952 3.70088 3.74237 3.77657 3.90464 3.92118 3.97953 4.36559 4.47826 4.50276 4.57661 4.59116 4.61213 4.62547 4.66926 4.72829 4.77638 4.81410 4.83943 4.86405 4.90877 5.01671 5.10939 5.23323 5.25699 5.35762 5.52761 5.74955 6.03872 6.29301 6.84612 6.92344 7.25906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.127 3.873 3 C -0.138 4.138 4 C -0.181 4.181 5 O -0.370 6.370 6 C 0.647 3.353 7 O -0.591 6.591 8 N -0.686 5.686 9 C 0.139 3.861 10 H 0.107 0.893 11 C -0.163 4.163 12 C 0.139 3.861 13 H 0.107 0.893 14 N -0.671 5.671 15 C 0.326 3.674 16 N -0.571 5.571 17 C 0.109 3.891 18 C -0.274 4.274 19 C -0.024 4.024 20 O -0.564 6.564 21 Si 0.756 3.244 22 S 0.055 5.945 23 C -0.132 4.132 24 H 0.063 0.937 25 H 0.087 0.913 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.099 0.901 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.088 0.912 32 H 0.059 0.941 33 H 0.416 0.584 34 H 0.105 0.895 35 H 0.058 0.942 36 H 0.426 0.574 37 H 0.188 0.812 38 H 0.106 0.894 39 H 0.405 0.595 40 H -0.272 1.272 41 H -0.287 1.287 42 H 0.096 0.904 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.677 -0.436 4.473 4.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.091 3.909 3 C -0.195 4.195 4 C -0.238 4.238 5 O -0.285 6.285 6 C 0.401 3.599 7 O -0.481 6.481 8 N -0.345 5.345 9 C 0.034 3.966 10 H 0.125 0.875 11 C -0.204 4.204 12 C 0.032 3.968 13 H 0.125 0.875 14 N -0.310 5.310 15 C -0.044 4.044 16 N -0.297 5.297 17 C -0.041 4.041 18 C -0.396 4.396 19 C -0.137 4.137 20 O -0.374 6.374 21 Si 0.660 3.340 22 S 0.304 5.696 23 C -0.171 4.171 24 H 0.082 0.918 25 H 0.106 0.894 26 H 0.083 0.917 27 H 0.087 0.913 28 H 0.118 0.882 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.107 0.893 32 H 0.079 0.921 33 H 0.253 0.747 34 H 0.123 0.877 35 H 0.077 0.923 36 H 0.266 0.734 37 H 0.204 0.796 38 H 0.124 0.876 39 H 0.257 0.743 40 H -0.198 1.198 41 H -0.214 1.214 42 H 0.115 0.885 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -0.390 -1.149 3.829 4.016 hybrid contribution 0.579 0.809 -0.233 1.022 sum 0.189 -0.340 3.595 3.616 Atomic orbital electron populations 1.22470 0.93811 1.03777 1.03615 1.22370 0.94618 0.92544 0.81372 1.21898 1.02406 0.90880 1.04339 1.22482 1.01546 1.02289 0.97482 1.86319 1.71524 1.23247 1.47362 1.18285 0.78516 0.80743 0.82352 1.90907 1.42216 1.71004 1.43991 1.44390 1.55030 1.11828 1.23259 1.21620 0.98480 0.77932 0.98555 0.87502 1.24036 0.98467 1.00712 0.97194 1.22709 0.96634 0.85805 0.91693 0.87516 1.44159 1.02230 1.20507 1.64118 1.24039 0.91496 0.93311 0.95584 1.66463 0.99603 1.33679 1.29993 1.21562 0.94403 0.93747 0.94360 1.24663 0.97011 0.99825 1.18138 1.23857 0.87688 1.08973 0.93161 1.86462 1.30581 1.83797 1.36578 0.94176 0.85636 0.76164 0.78049 1.84104 1.04003 1.20596 1.60918 1.23754 0.94948 1.03354 0.95006 0.91808 0.89403 0.91697 0.91319 0.88208 0.91077 0.91774 0.89339 0.92148 0.74711 0.87659 0.92272 0.73410 0.79557 0.87636 0.74331 1.19819 1.21354 0.88525 0.85531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.62 8.37 71.98 0.60 -0.02 16 2 C 0.13 0.47 1.13 -10.80 -0.01 0.46 16 3 C -0.14 0.18 8.85 71.98 0.64 0.82 16 4 C -0.18 -0.77 8.37 71.98 0.60 -0.17 16 5 O -0.37 -2.37 9.94 -55.54 -0.55 -2.93 16 6 C 0.65 4.73 8.06 129.79 1.05 5.78 16 7 O -0.59 -7.25 11.48 19.80 0.23 -7.02 16 8 N -0.69 -0.70 5.27 -567.60 -2.99 -3.69 16 9 C 0.14 -0.22 4.32 45.51 0.20 -0.02 16 10 H 0.11 0.09 7.46 -2.39 -0.02 0.07 16 11 C -0.16 0.10 7.68 31.12 0.24 0.34 16 12 C 0.14 -0.31 4.23 45.51 0.19 -0.11 16 13 H 0.11 0.08 7.66 -2.39 -0.02 0.07 16 14 N -0.67 0.60 5.51 -327.90 -1.81 -1.21 16 15 C 0.33 1.77 8.09 179.32 1.45 3.22 16 16 N -0.57 -4.98 9.83 -202.02 -1.99 -6.97 16 17 C 0.11 0.79 11.22 83.54 0.94 1.72 16 18 C -0.27 -1.62 5.78 24.58 0.14 -1.48 16 19 C -0.02 0.01 2.98 71.24 0.21 0.22 16 20 O -0.56 0.10 12.84 -148.98 -1.91 -1.81 16 21 Si 0.76 -1.13 31.05 68.60 2.13 1.00 16 22 S 0.06 0.30 20.57 -56.49 -1.16 -0.86 16 23 C -0.13 0.90 7.58 31.12 0.24 1.14 16 24 H 0.06 0.17 8.14 -2.39 -0.02 0.15 16 25 H 0.09 0.00 8.14 -2.39 -0.02 -0.02 16 26 H 0.06 0.56 5.88 -2.38 -0.01 0.54 16 27 H 0.07 -0.08 8.14 -2.39 -0.02 -0.10 16 28 H 0.10 -0.47 8.14 -2.39 -0.02 -0.49 16 29 H 0.07 -0.12 8.14 -2.39 -0.02 -0.14 16 30 H 0.06 0.61 5.88 -2.38 -0.01 0.60 16 31 H 0.09 0.05 8.14 -2.39 -0.02 0.03 16 32 H 0.06 0.24 8.14 -2.39 -0.02 0.22 16 33 H 0.42 -1.08 8.81 -92.71 -0.82 -1.89 16 34 H 0.11 -0.22 8.14 -2.39 -0.02 -0.24 16 35 H 0.06 0.24 8.14 -2.39 -0.02 0.22 16 36 H 0.43 -2.47 8.85 -92.70 -0.82 -3.29 16 37 H 0.19 0.72 8.06 -2.91 -0.02 0.70 16 38 H 0.11 -0.54 7.96 -2.39 -0.02 -0.56 16 39 H 0.40 -4.51 8.74 -74.06 -0.65 -5.16 16 40 H -0.27 -0.91 7.11 99.48 0.71 -0.20 16 41 H -0.29 -1.82 7.11 99.48 0.71 -1.12 16 42 H 0.10 -0.76 8.14 -2.39 -0.02 -0.78 16 43 H 0.13 -1.34 8.12 -2.39 -0.02 -1.36 16 Total: 0.00 -21.58 366.23 -2.76 -24.34 By element: Atomic # 1 Polarization: -11.56 SS G_CDS: -1.19 Total: -12.76 kcal Atomic # 6 Polarization: 5.42 SS G_CDS: 6.48 Total: 11.90 kcal Atomic # 7 Polarization: -5.09 SS G_CDS: -6.78 Total: -11.87 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: -2.24 Total: -11.76 kcal Atomic # 14 Polarization: -1.13 SS G_CDS: 2.13 Total: 1.00 kcal Atomic # 16 Polarization: 0.30 SS G_CDS: -1.16 Total: -0.86 kcal Total: -21.58 -2.76 -24.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_13941012_15704118.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.028 kcal (2) G-P(sol) polarization free energy of solvation -21.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds