Wall clock time and date at job start Mon Mar 8 2021 04:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.33332 * 125.94851 * 2 1 4 4 C 1.50693 * 122.71124 * 359.96176 * 3 2 1 5 5 O 1.42900 * 109.47403 * 113.28172 * 4 3 2 6 6 Si 1.86298 * 109.47296 * 233.28680 * 4 3 2 7 7 N 1.32116 * 114.57702 * 179.69824 * 3 2 1 8 8 C 1.29687 * 116.86585 * 0.26007 * 7 3 2 9 9 N 1.38610 * 124.94649 * 179.97438 * 8 7 3 10 10 C 1.46508 * 119.99715 * 180.02562 * 9 8 7 11 11 H 1.08999 * 112.85125 * 25.33781 * 10 9 8 12 12 C 1.53779 * 113.61267 * 156.53499 * 10 9 8 13 13 C 1.53779 * 87.08197 * 139.98113 * 12 10 9 14 14 H 1.09000 * 113.61269 * 219.93415 * 13 12 10 15 15 N 1.46494 * 113.61412 * 89.11443 * 13 12 10 16 16 C 1.34779 * 119.99894 * 154.99829 * 15 13 12 17 17 O 1.21508 * 120.00058 * 0.02562 * 16 15 13 18 18 O 1.34635 * 119.99875 * 179.97438 * 16 15 13 19 19 C 1.45210 * 117.00014 * 180.02562 * 18 16 15 20 20 C 1.53002 * 109.47037 * 60.00172 * 19 18 16 21 21 C 1.52990 * 109.47117 * 180.02562 * 19 18 16 22 22 C 1.53004 * 109.46759 * 300.00568 * 19 18 16 23 23 C 1.53781 * 113.61114 * 254.13958 * 10 9 8 24 24 S 1.70961 * 110.10455 * 0.02562 * 8 7 3 25 25 H 1.09001 * 109.47277 * 84.91747 * 1 2 3 26 26 H 1.09001 * 109.46610 * 204.91388 * 1 2 3 27 27 H 1.09004 * 109.47045 * 324.91538 * 1 2 3 28 28 H 1.09010 * 109.47332 * 353.28435 * 4 3 2 29 29 H 0.96699 * 114.00015 * 180.02562 * 5 4 3 30 30 H 1.48496 * 109.99733 * 299.99791 * 6 4 3 31 31 H 1.48502 * 110.00190 * 61.31736 * 6 4 3 32 32 H 0.96998 * 120.00060 * 0.02562 * 9 8 7 33 33 H 1.09001 * 113.61294 * 254.53416 * 12 10 9 34 34 H 1.09008 * 113.61459 * 25.34450 * 12 10 9 35 35 H 0.96999 * 120.00249 * 335.00416 * 15 13 12 36 36 H 1.08999 * 109.46941 * 60.00116 * 20 19 18 37 37 H 1.08993 * 109.46999 * 180.02562 * 20 19 18 38 38 H 1.09004 * 109.47282 * 300.00488 * 20 19 18 39 39 H 1.09000 * 109.47645 * 59.99839 * 21 19 18 40 40 H 1.09003 * 109.47341 * 179.97438 * 21 19 18 41 41 H 1.08999 * 109.47175 * 300.00076 * 21 19 18 42 42 H 1.08998 * 109.47554 * 59.99902 * 22 19 18 43 43 H 1.09003 * 109.46718 * 180.02562 * 22 19 18 44 44 H 1.09000 * 109.46723 * 299.99377 * 22 19 18 45 45 H 1.08996 * 113.62063 * 334.56995 * 23 10 9 46 46 H 1.08998 * 113.61165 * 105.47799 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2898 1.0794 0.0000 4 6 1.7414 2.4830 -0.0008 5 8 2.0634 3.1210 1.2366 6 14 2.4942 3.4430 -1.4088 7 7 3.5850 0.8189 0.0063 8 6 3.9315 -0.4308 0.0064 9 7 5.2384 -0.8924 0.0120 10 6 5.5066 -2.3328 0.0109 11 1 4.6937 -2.9143 -0.4239 12 6 6.8927 -2.7008 -0.5440 13 6 6.9758 -3.7505 0.5768 14 1 7.9628 -3.8245 1.0334 15 7 6.4233 -5.0544 0.2017 16 6 6.8493 -6.1712 0.8245 17 8 7.6913 -6.0965 1.6974 18 8 6.3411 -7.3695 0.4801 19 6 6.8460 -8.5292 1.1933 20 6 6.5573 -8.3744 2.6878 21 6 6.1572 -9.7904 0.6683 22 6 8.3560 -8.6447 0.9748 23 6 5.9913 -2.8701 1.3679 24 16 2.5414 -1.4260 -0.0028 25 1 -0.3634 0.0910 -1.0236 26 1 -0.3632 -0.9321 0.4329 27 1 -0.3633 0.8410 0.5907 28 1 0.6585 2.4500 -0.1216 29 1 1.7403 4.0297 1.3063 30 1 3.9703 3.4954 -1.2558 31 1 2.1399 2.8077 -2.7035 32 1 5.9755 -0.2619 0.0167 33 1 6.8620 -3.1319 -1.5447 34 1 7.6272 -1.9008 -0.4502 35 1 5.7509 -5.1141 -0.4949 36 1 5.4816 -8.2921 2.8435 37 1 6.9367 -9.2447 3.2232 38 1 7.0483 -7.4758 3.0616 39 1 6.3632 -9.9006 -0.3964 40 1 6.5365 -10.6611 1.2033 41 1 5.0815 -9.7083 0.8236 42 1 8.8470 -7.7462 1.3486 43 1 8.7349 -9.5155 1.5098 44 1 8.5616 -8.7550 -0.0899 45 1 6.4791 -2.1170 1.9867 46 1 5.2339 -3.4377 1.9084 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_13941012_15704122.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:37:25 Heat of formation + Delta-G solvation = -36.297386 kcal Electronic energy + Delta-G solvation = -27590.537879 eV Core-core repulsion = 23609.776851 eV Total energy + Delta-G solvation = -3980.761028 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 342.145 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.04213 -41.18772 -40.57535 -38.17154 -37.55997 -36.11179 -35.23746 -33.88450 -32.59764 -29.18197 -28.40216 -28.33505 -26.95047 -26.26126 -25.55566 -24.24718 -23.68092 -21.26817 -21.20196 -20.01199 -19.51195 -19.16011 -18.41590 -17.74643 -17.58865 -17.28506 -16.84717 -16.64102 -16.25094 -15.76270 -15.66004 -15.41813 -15.38891 -15.01024 -14.48942 -14.39550 -14.31258 -14.09627 -13.87213 -13.65597 -13.60915 -13.43321 -13.25225 -13.15391 -12.97218 -12.95276 -12.90458 -12.59879 -12.37005 -12.32217 -12.19445 -11.98574 -11.76749 -11.43983 -11.18411 -11.08994 -10.74995 -10.42219 -10.33471 -10.12062 -8.77027 -5.04665 -0.17715 0.02987 0.58199 1.04201 1.22913 1.58150 1.65406 1.74481 1.85543 2.13560 3.00970 3.17618 3.29300 3.41539 3.64707 3.69581 3.70449 3.74625 3.76302 3.90802 3.99139 4.13417 4.29073 4.38478 4.44895 4.52670 4.58119 4.58293 4.60179 4.69479 4.73374 4.76119 4.79673 4.82243 4.84401 4.84659 4.85975 4.89860 5.08820 5.17078 5.23641 5.23807 5.32496 5.50285 5.59055 6.18446 6.28369 6.80025 6.92930 7.25439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.256 4.256 3 C 0.079 3.921 4 C -0.041 4.041 5 O -0.561 6.561 6 Si 0.800 3.200 7 N -0.576 5.576 8 C 0.299 3.701 9 N -0.678 5.678 10 C 0.125 3.875 11 H 0.112 0.888 12 C -0.130 4.130 13 C 0.141 3.859 14 H 0.107 0.893 15 N -0.685 5.685 16 C 0.648 3.352 17 O -0.590 6.590 18 O -0.368 6.368 19 C 0.128 3.872 20 C -0.181 4.181 21 C -0.138 4.138 22 C -0.181 4.181 23 C -0.164 4.164 24 S 0.131 5.869 25 H 0.087 0.913 26 H 0.078 0.922 27 H 0.091 0.909 28 H 0.109 0.891 29 H 0.404 0.596 30 H -0.311 1.311 31 H -0.302 1.302 32 H 0.415 0.585 33 H 0.101 0.899 34 H 0.122 0.878 35 H 0.417 0.583 36 H 0.061 0.939 37 H 0.087 0.913 38 H 0.063 0.937 39 H 0.070 0.930 40 H 0.098 0.902 41 H 0.069 0.931 42 H 0.064 0.936 43 H 0.086 0.914 44 H 0.063 0.937 45 H 0.103 0.897 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.029 -0.774 -2.716 4.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.379 4.379 3 C -0.050 4.050 4 C -0.153 4.153 5 O -0.371 6.371 6 Si 0.707 3.293 7 N -0.303 5.303 8 C -0.073 4.073 9 N -0.318 5.318 10 C 0.020 3.980 11 H 0.130 0.870 12 C -0.169 4.169 13 C 0.036 3.964 14 H 0.125 0.875 15 N -0.345 5.345 16 C 0.401 3.599 17 O -0.480 6.480 18 O -0.283 6.283 19 C 0.092 3.908 20 C -0.238 4.238 21 C -0.195 4.195 22 C -0.238 4.238 23 C -0.204 4.204 24 S 0.380 5.620 25 H 0.105 0.895 26 H 0.097 0.903 27 H 0.109 0.891 28 H 0.126 0.874 29 H 0.256 0.744 30 H -0.239 1.239 31 H -0.230 1.230 32 H 0.254 0.746 33 H 0.120 0.880 34 H 0.140 0.860 35 H 0.254 0.746 36 H 0.081 0.919 37 H 0.105 0.895 38 H 0.082 0.918 39 H 0.089 0.911 40 H 0.117 0.883 41 H 0.088 0.912 42 H 0.083 0.917 43 H 0.105 0.895 44 H 0.082 0.918 45 H 0.122 0.878 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.531 -2.296 -2.835 4.440 hybrid contribution 0.075 0.531 0.114 0.548 sum -2.456 -1.765 -2.721 4.068 Atomic orbital electron populations 1.20334 0.84590 1.04317 1.03876 1.25617 1.02782 0.93134 1.16372 1.19456 0.86671 0.96333 1.02515 1.24412 1.03542 0.90570 0.96764 1.86477 1.81971 1.33326 1.35289 0.95246 0.77422 0.84429 0.72212 1.66135 1.18644 1.17852 1.27633 1.23713 0.93320 0.91537 0.98694 1.44106 1.00984 1.07341 1.79326 1.22929 0.98873 0.78514 0.97696 0.86981 1.23707 0.95511 0.98113 0.99563 1.21612 0.98099 0.79570 0.97113 0.87481 1.44346 1.45421 1.03207 1.41516 1.18280 0.79645 0.81604 0.80330 1.90918 1.35866 1.86867 1.34396 1.86314 1.64549 1.14665 1.62749 1.22362 0.94612 0.82209 0.91634 1.22481 1.02407 1.04299 0.94618 1.21896 1.01317 0.93674 1.02640 1.22482 0.94376 1.04156 1.02759 1.24105 0.99632 0.99351 0.97349 1.83629 0.95518 1.09334 1.73557 0.89451 0.90312 0.89063 0.87351 0.74443 1.23915 1.22976 0.74577 0.88034 0.85982 0.74555 0.91946 0.89463 0.91761 0.91106 0.88319 0.91165 0.91712 0.89482 0.91845 0.87829 0.90935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 0.11 9.71 71.24 0.69 0.80 16 2 C -0.26 -1.45 6.57 24.58 0.16 -1.29 16 3 C 0.08 0.76 5.22 41.40 0.22 0.97 16 4 C -0.04 -0.14 2.82 71.23 0.20 0.06 16 5 O -0.56 -2.24 12.86 -148.98 -1.92 -4.16 16 6 Si 0.80 2.36 32.62 68.60 2.24 4.60 16 7 N -0.58 -7.34 9.77 -189.87 -1.85 -9.19 16 8 C 0.30 2.24 8.24 179.32 1.48 3.71 16 9 N -0.68 -0.92 5.52 -327.89 -1.81 -2.73 16 10 C 0.13 -0.48 4.07 45.52 0.19 -0.30 16 11 H 0.11 -0.55 7.11 -2.39 -0.02 -0.56 16 12 C -0.13 0.94 7.58 31.12 0.24 1.18 16 13 C 0.14 -0.43 4.33 45.58 0.20 -0.23 16 14 H 0.11 0.00 7.46 -2.39 -0.02 -0.02 16 15 N -0.69 0.97 5.26 -567.33 -2.99 -2.02 16 16 C 0.65 3.45 8.06 129.79 1.05 4.49 16 17 O -0.59 -6.37 11.48 19.81 0.23 -6.14 16 18 O -0.37 -1.62 9.94 -55.45 -0.55 -2.17 16 19 C 0.13 0.29 1.13 -10.79 -0.01 0.28 16 20 C -0.18 -0.51 8.37 71.98 0.60 0.09 16 21 C -0.14 0.36 8.85 71.98 0.64 1.00 16 22 C -0.18 -0.46 8.37 71.98 0.60 0.15 16 23 C -0.16 0.41 7.69 31.18 0.24 0.65 16 24 S 0.13 0.49 21.71 -56.49 -1.23 -0.73 16 25 H 0.09 -0.35 8.14 -2.39 -0.02 -0.37 16 26 H 0.08 -0.24 8.14 -2.39 -0.02 -0.26 16 27 H 0.09 -0.31 7.18 -2.39 -0.02 -0.33 16 28 H 0.11 -0.36 6.34 -2.38 -0.02 -0.38 16 29 H 0.40 -3.17 8.74 -74.06 -0.65 -3.82 16 30 H -0.31 -4.22 7.11 99.48 0.71 -3.51 16 31 H -0.30 -2.63 7.11 99.48 0.71 -1.92 16 32 H 0.42 0.15 8.84 -92.71 -0.82 -0.67 16 33 H 0.10 -0.91 8.14 -2.39 -0.02 -0.93 16 34 H 0.12 -1.11 8.11 -2.38 -0.02 -1.13 16 35 H 0.42 -2.46 8.81 -92.71 -0.82 -3.28 16 36 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 37 H 0.09 -0.04 8.14 -2.39 -0.02 -0.06 16 38 H 0.06 0.52 5.88 -2.39 -0.01 0.50 16 39 H 0.07 -0.21 8.14 -2.39 -0.02 -0.23 16 40 H 0.10 -0.57 8.14 -2.39 -0.02 -0.59 16 41 H 0.07 -0.20 8.14 -2.39 -0.02 -0.22 16 42 H 0.06 0.50 5.88 -2.39 -0.01 0.48 16 43 H 0.09 -0.06 8.14 -2.39 -0.02 -0.08 16 44 H 0.06 0.11 8.14 -2.39 -0.02 0.09 16 45 H 0.10 -0.22 8.14 -2.39 -0.02 -0.24 16 46 H 0.07 -0.01 8.14 -2.39 -0.02 -0.03 16 Total: 0.00 -25.79 386.44 -2.61 -28.41 By element: Atomic # 1 Polarization: -16.20 SS G_CDS: -1.22 Total: -17.42 kcal Atomic # 6 Polarization: 5.08 SS G_CDS: 6.48 Total: 11.57 kcal Atomic # 7 Polarization: -7.29 SS G_CDS: -6.65 Total: -13.94 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: -2.24 Total: -12.47 kcal Atomic # 14 Polarization: 2.36 SS G_CDS: 2.24 Total: 4.60 kcal Atomic # 16 Polarization: 0.49 SS G_CDS: -1.23 Total: -0.73 kcal Total: -25.79 -2.61 -28.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_13941012_15704122.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.891 kcal (2) G-P(sol) polarization free energy of solvation -25.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds