Wall clock time and date at job start Mon Mar 8 2021 04:37:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.46837 * 2 1 4 4 C 1.52997 * 109.47273 * 240.00301 * 2 1 3 5 5 O 1.45199 * 109.47473 * 120.00152 * 2 1 3 6 6 C 1.34634 * 116.99915 * 59.99711 * 5 2 1 7 7 O 1.21511 * 119.99930 * 0.02562 * 6 5 2 8 8 N 1.34774 * 119.99961 * 180.02562 * 6 5 2 9 9 C 1.46506 * 120.00121 * 180.02562 * 8 6 5 10 10 H 1.08999 * 112.84379 * 336.20036 * 9 8 6 11 11 C 1.54054 * 113.61516 * 107.50792 * 9 8 6 12 12 C 1.53782 * 86.98346 * 139.98346 * 11 9 8 13 13 H 1.09000 * 113.61200 * 219.98229 * 12 11 9 14 14 N 1.46495 * 113.61557 * 89.15865 * 12 11 9 15 15 C 1.39142 * 120.00111 * 105.86691 * 14 12 11 16 16 N 1.32338 * 119.71571 * 359.97438 * 15 14 12 17 17 C 1.32010 * 121.64695 * 179.68964 * 16 15 14 18 18 C 1.37990 * 120.89981 * 0.61849 * 17 16 15 19 19 C 1.50699 * 120.32692 * 179.68671 * 18 17 16 20 20 O 1.42892 * 109.47249 * 119.73026 * 19 18 17 21 21 Si 1.86298 * 109.47032 * 359.72412 * 19 18 17 22 22 C 1.38907 * 119.34206 * 359.41654 * 18 17 16 23 23 C 1.38441 * 118.48759 * 0.27019 * 22 18 17 24 24 F 1.35097 * 120.47033 * 180.02562 * 23 22 18 25 25 C 1.53773 * 113.61633 * 205.00408 * 9 8 6 26 26 H 1.09008 * 109.47456 * 299.99805 * 1 2 3 27 27 H 1.09005 * 109.47374 * 59.99935 * 1 2 3 28 28 H 1.09001 * 109.47318 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47022 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.46955 * 299.99973 * 3 2 1 31 31 H 1.09002 * 109.46984 * 60.00583 * 3 2 1 32 32 H 1.08995 * 109.47349 * 299.99969 * 4 2 1 33 33 H 1.09005 * 109.47113 * 59.99605 * 4 2 1 34 34 H 1.09002 * 109.47051 * 179.97438 * 4 2 1 35 35 H 0.96998 * 120.00132 * 0.02562 * 8 6 5 36 36 H 1.08991 * 113.61505 * 25.47477 * 11 9 8 37 37 H 1.09004 * 113.69117 * 254.49516 * 11 9 8 38 38 H 0.97004 * 120.00266 * 285.85590 * 14 12 11 39 39 H 1.08003 * 119.55300 * 180.33867 * 17 16 15 40 40 H 1.09004 * 109.46453 * 239.73094 * 19 18 17 41 41 H 0.96703 * 114.00176 * 299.99748 * 20 19 18 42 42 H 1.48506 * 109.99834 * 58.68765 * 21 19 18 43 43 H 1.48502 * 110.00011 * 180.02562 * 21 19 18 44 44 H 1.08005 * 120.75083 * 180.29207 * 22 18 17 45 45 H 1.08993 * 113.61707 * 105.46807 * 25 9 8 46 46 H 1.09003 * 113.69142 * 334.57894 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0140 -0.6845 1.1855 6 6 1.6523 -1.9723 1.3383 7 8 0.9516 -2.5096 0.5035 8 7 2.0673 -2.6654 2.4170 9 6 1.6741 -4.0669 2.5830 10 1 0.7602 -4.3167 2.0441 11 6 2.8250 -5.0631 2.3452 12 6 2.2740 -5.8596 3.5397 13 1 3.0498 -6.2648 4.1894 14 7 1.2669 -6.8558 3.1664 15 6 1.5940 -8.2082 3.1628 16 7 2.8167 -8.5883 3.4972 17 6 3.1665 -9.8611 3.5126 18 6 2.2662 -10.8477 3.1658 19 6 2.6813 -12.2963 3.1812 20 8 1.8626 -13.0167 4.1045 21 14 4.4656 -12.4254 3.7013 22 6 0.9718 -10.4928 2.8079 23 6 0.6315 -9.1508 2.8068 24 9 -0.6163 -8.7608 2.4659 25 6 1.6742 -4.5375 4.0470 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 3.1300 1.4426 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9564 0.8901 32 1 1.6767 -1.7488 -1.2493 33 1 1.6766 -0.2073 -2.1392 34 1 3.1300 -0.7207 -1.2494 35 1 2.6263 -2.2363 3.0836 36 1 3.8132 -4.6387 2.5218 37 1 2.7549 -5.5948 1.3962 38 1 0.3719 -6.5727 2.9218 39 1 4.1723 -10.1338 3.7962 40 1 2.5623 -12.7189 2.1835 41 1 1.9186 -12.6942 5.0145 42 1 4.6472 -11.8238 5.0469 43 1 4.8875 -13.8491 3.7198 44 1 0.2473 -11.2466 2.5370 45 1 0.6759 -4.6452 4.4711 46 1 2.3480 -3.9704 4.6893 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_13941012_17656566.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:37:29 Heat of formation + Delta-G solvation = -81.927080 kcal Electronic energy + Delta-G solvation = -29495.336270 eV Core-core repulsion = 25109.527987 eV Total energy + Delta-G solvation = -4385.808283 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -49.97654 -41.96197 -41.48060 -40.39183 -38.26770 -37.87253 -35.93227 -35.16269 -33.82802 -33.13940 -31.06230 -28.39696 -28.32352 -26.86980 -26.75661 -25.95592 -24.71218 -23.11574 -22.98070 -21.33150 -20.59074 -19.54420 -19.13418 -18.63197 -18.28157 -17.74305 -17.57130 -17.21346 -17.04418 -16.74996 -16.39525 -16.13507 -15.88604 -15.71471 -15.49200 -15.41549 -14.93589 -14.70923 -14.51490 -14.31599 -14.10006 -13.89150 -13.56639 -13.47375 -13.37134 -13.16982 -13.01296 -12.93155 -12.88889 -12.65618 -12.58361 -12.31863 -12.13365 -12.07088 -11.67126 -11.41922 -11.23307 -11.13664 -10.79459 -10.65254 -10.53481 -10.18343 -8.80170 -4.87831 -0.09615 0.08643 1.15662 1.32423 1.64026 1.70906 1.90440 2.00854 2.51837 3.00451 3.13182 3.22787 3.38193 3.43363 3.51237 3.59620 3.71800 3.76960 3.84333 3.85075 3.92020 3.94290 4.01374 4.42512 4.44295 4.52945 4.56243 4.58324 4.66873 4.71544 4.73701 4.73811 4.77579 4.82542 4.85318 4.87336 4.95758 4.98055 4.98978 5.10895 5.24172 5.25601 5.34820 5.44824 5.57341 5.97154 6.13750 6.38509 6.50943 6.91936 7.32184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.127 3.873 3 C -0.138 4.138 4 C -0.180 4.180 5 O -0.369 6.369 6 C 0.642 3.358 7 O -0.596 6.596 8 N -0.687 5.687 9 C 0.134 3.866 10 H 0.097 0.903 11 C -0.159 4.159 12 C 0.140 3.860 13 H 0.117 0.883 14 N -0.700 5.700 15 C 0.385 3.615 16 N -0.521 5.521 17 C 0.148 3.852 18 C -0.202 4.202 19 C -0.069 4.069 20 O -0.549 6.549 21 Si 0.766 3.234 22 C -0.041 4.041 23 C -0.039 4.039 24 F -0.142 7.142 25 C -0.136 4.136 26 H 0.062 0.938 27 H 0.086 0.914 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.098 0.902 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.086 0.914 34 H 0.062 0.938 35 H 0.419 0.581 36 H 0.110 0.890 37 H 0.057 0.943 38 H 0.414 0.586 39 H 0.186 0.814 40 H 0.128 0.872 41 H 0.387 0.613 42 H -0.274 1.274 43 H -0.302 1.302 44 H 0.153 0.847 45 H 0.087 0.913 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.195 3.086 1.998 5.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.091 3.909 3 C -0.195 4.195 4 C -0.237 4.237 5 O -0.283 6.283 6 C 0.395 3.605 7 O -0.487 6.487 8 N -0.347 5.347 9 C 0.030 3.970 10 H 0.115 0.885 11 C -0.199 4.199 12 C 0.033 3.967 13 H 0.135 0.865 14 N -0.333 5.333 15 C 0.147 3.853 16 N -0.238 5.238 17 C -0.009 4.009 18 C -0.208 4.208 19 C -0.178 4.178 20 O -0.357 6.357 21 Si 0.671 3.329 22 C -0.067 4.067 23 C -0.065 4.065 24 F -0.121 7.121 25 C -0.174 4.174 26 H 0.081 0.919 27 H 0.105 0.895 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.116 0.884 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.105 0.895 34 H 0.081 0.919 35 H 0.257 0.743 36 H 0.128 0.872 37 H 0.076 0.924 38 H 0.252 0.748 39 H 0.202 0.798 40 H 0.146 0.854 41 H 0.236 0.764 42 H -0.200 1.200 43 H -0.230 1.230 44 H 0.171 0.829 45 H 0.106 0.894 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 4.936 3.077 1.853 6.104 hybrid contribution -2.152 -0.545 0.439 2.263 sum 2.784 2.532 2.292 4.406 Atomic orbital electron populations 1.22475 0.94113 1.03622 1.03522 1.22341 0.94402 0.92620 0.81519 1.21893 1.02496 0.90813 1.04256 1.22471 1.01661 1.02177 0.97416 1.86311 1.71506 1.23316 1.47213 1.18464 0.78576 0.80722 0.82695 1.90906 1.42442 1.71078 1.44313 1.44735 1.54834 1.12130 1.22975 1.22750 0.98619 0.77343 0.98295 0.88465 1.24054 0.99748 0.96835 0.99298 1.21620 0.91360 0.87116 0.96561 0.86472 1.44332 1.15014 1.00932 1.72990 1.18514 0.89045 0.85934 0.91839 1.67349 1.15296 1.20108 1.21001 1.22733 0.99757 0.86148 0.92235 1.20930 0.94303 0.98005 1.07517 1.25065 1.06909 0.87810 0.98065 1.86585 1.67100 1.59601 1.22432 0.94157 0.74977 0.79914 0.83882 1.21433 0.97484 0.93503 0.94291 1.18172 0.81407 0.93780 1.13144 1.91469 1.38401 1.91487 1.90774 1.23768 1.03968 0.94764 0.94950 0.91877 0.89520 0.91897 0.91114 0.88366 0.91119 0.91933 0.89519 0.91892 0.74286 0.87172 0.92386 0.74787 0.79803 0.85441 0.76379 1.19999 1.22990 0.82901 0.89441 0.85360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.62 8.37 71.98 0.60 -0.02 16 2 C 0.13 0.38 1.13 -10.79 -0.01 0.37 16 3 C -0.14 0.30 8.85 71.98 0.64 0.94 16 4 C -0.18 -0.65 8.37 71.98 0.60 -0.04 16 5 O -0.37 -1.93 9.94 -55.43 -0.55 -2.48 16 6 C 0.64 4.14 8.06 129.79 1.05 5.19 16 7 O -0.60 -7.34 11.48 19.81 0.23 -7.11 16 8 N -0.69 0.50 5.36 -567.17 -3.04 -2.55 16 9 C 0.13 -0.26 4.13 45.61 0.19 -0.07 16 10 H 0.10 0.24 7.46 -2.39 -0.02 0.23 16 11 C -0.16 0.39 7.70 31.21 0.24 0.63 16 12 C 0.14 -0.51 4.32 45.52 0.20 -0.32 16 13 H 0.12 -0.39 7.45 -2.39 -0.02 -0.41 16 14 N -0.70 0.21 5.42 -321.79 -1.74 -1.53 16 15 C 0.38 1.09 7.49 133.08 1.00 2.08 16 16 N -0.52 -0.98 9.15 -193.03 -1.77 -2.74 16 17 C 0.15 -0.23 9.84 84.61 0.83 0.60 16 18 C -0.20 0.27 5.40 -19.76 -0.11 0.17 16 19 C -0.07 0.21 2.84 71.24 0.20 0.41 16 20 O -0.55 -0.23 12.78 -148.98 -1.90 -2.13 16 21 Si 0.77 -3.64 29.82 68.60 2.05 -1.59 16 22 C -0.04 -0.06 9.75 22.48 0.22 0.16 16 23 C -0.04 -0.15 7.35 22.58 0.17 0.02 16 24 F -0.14 -0.84 16.65 44.97 0.75 -0.09 16 25 C -0.14 0.96 7.57 31.12 0.24 1.20 16 26 H 0.06 0.16 8.14 -2.38 -0.02 0.14 16 27 H 0.09 0.01 8.14 -2.38 -0.02 -0.01 16 28 H 0.06 0.56 5.88 -2.39 -0.01 0.55 16 29 H 0.07 -0.17 8.14 -2.38 -0.02 -0.19 16 30 H 0.10 -0.52 8.14 -2.39 -0.02 -0.54 16 31 H 0.07 -0.18 8.14 -2.39 -0.02 -0.20 16 32 H 0.06 0.57 5.88 -2.39 -0.01 0.56 16 33 H 0.09 0.02 8.14 -2.38 -0.02 0.00 16 34 H 0.06 0.18 8.14 -2.39 -0.02 0.16 16 35 H 0.42 -2.51 8.84 -92.71 -0.82 -3.33 16 36 H 0.11 -0.53 8.14 -2.39 -0.02 -0.55 16 37 H 0.06 0.13 8.14 -2.38 -0.02 0.11 16 38 H 0.41 -0.44 8.18 -92.71 -0.76 -1.19 16 39 H 0.19 -1.26 4.88 -2.91 -0.01 -1.27 16 40 H 0.13 -0.58 7.96 -2.38 -0.02 -0.60 16 41 H 0.39 -2.00 8.70 -74.06 -0.64 -2.64 16 42 H -0.27 0.46 7.11 99.48 0.71 1.17 16 43 H -0.30 -1.06 7.11 99.48 0.71 -0.35 16 44 H 0.15 0.02 8.06 -2.91 -0.02 -0.01 16 45 H 0.09 -0.60 8.14 -2.39 -0.02 -0.62 16 46 H 0.13 -1.44 8.12 -2.39 -0.02 -1.46 16 Total: 0.00 -18.32 378.79 -1.08 -19.40 By element: Atomic # 1 Polarization: -9.33 SS G_CDS: -1.14 Total: -10.47 kcal Atomic # 6 Polarization: 5.26 SS G_CDS: 6.05 Total: 11.31 kcal Atomic # 7 Polarization: -0.27 SS G_CDS: -6.55 Total: -6.82 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: -2.23 Total: -11.72 kcal Atomic # 9 Polarization: -0.84 SS G_CDS: 0.75 Total: -0.09 kcal Atomic # 14 Polarization: -3.64 SS G_CDS: 2.05 Total: -1.59 kcal Total: -18.32 -1.08 -19.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_13941012_17656566.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.530 kcal (2) G-P(sol) polarization free energy of solvation -18.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds