Wall clock time and date at job start Mon Mar 8 2021 04:37:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47092 * 2 1 4 4 C 1.53002 * 109.47454 * 239.99992 * 2 1 3 5 5 O 1.45206 * 109.47129 * 119.99823 * 2 1 3 6 6 C 1.34636 * 117.00048 * 60.00363 * 5 2 1 7 7 O 1.21514 * 119.99573 * 359.97438 * 6 5 2 8 8 N 1.34774 * 120.00282 * 179.97438 * 6 5 2 9 9 C 1.46497 * 120.00206 * 179.97438 * 8 6 5 10 10 H 1.09002 * 112.84865 * 23.80487 * 9 8 6 11 11 C 1.53779 * 113.61241 * 155.00040 * 9 8 6 12 12 C 1.53782 * 87.07952 * 139.98216 * 11 9 8 13 13 H 1.08999 * 113.61337 * 89.11699 * 12 11 9 14 14 N 1.46497 * 113.61564 * 219.93411 * 12 11 9 15 15 C 1.38409 * 120.00296 * 205.00181 * 14 12 11 16 16 N 1.32490 * 119.21502 * 359.73061 * 15 14 12 17 17 C 1.32281 * 120.74264 * 179.71863 * 16 15 14 18 18 C 1.38600 * 119.19265 * 0.54707 * 17 16 15 19 19 C 1.50700 * 120.71980 * 179.70836 * 18 17 16 20 20 O 1.42906 * 109.47246 * 120.02042 * 19 18 17 21 21 Si 1.86300 * 109.47203 * 0.02562 * 19 18 17 22 22 C 1.38605 * 118.56056 * 359.72638 * 18 17 16 23 23 N 1.32270 * 119.19766 * 0.02562 * 22 18 17 24 24 C 1.53782 * 113.61440 * 252.50147 * 9 8 6 25 25 H 1.09004 * 109.47059 * 299.99666 * 1 2 3 26 26 H 1.08992 * 109.47060 * 60.00150 * 1 2 3 27 27 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47375 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.47045 * 299.99867 * 3 2 1 30 30 H 1.09000 * 109.47140 * 59.99774 * 3 2 1 31 31 H 1.09004 * 109.47006 * 299.99897 * 4 2 1 32 32 H 1.09002 * 109.46838 * 59.99394 * 4 2 1 33 33 H 1.08992 * 109.47056 * 180.02562 * 4 2 1 34 34 H 0.97003 * 119.99726 * 0.02562 * 8 6 5 35 35 H 1.08999 * 113.61783 * 254.52636 * 11 9 8 36 36 H 1.08995 * 113.61541 * 25.35465 * 11 9 8 37 37 H 0.96995 * 119.99877 * 24.99874 * 14 12 11 38 38 H 1.08001 * 120.40626 * 180.29317 * 17 16 15 39 39 H 1.09007 * 109.47200 * 240.01790 * 19 18 17 40 40 H 0.96701 * 113.99523 * 300.00253 * 20 19 18 41 41 H 1.48501 * 109.99608 * 58.68413 * 21 19 18 42 42 H 1.48501 * 110.00039 * 179.97438 * 21 19 18 43 43 H 1.08001 * 120.40269 * 179.97438 * 22 18 17 44 44 H 1.08997 * 113.61709 * 334.56072 * 24 9 8 45 45 H 1.08994 * 113.61835 * 105.47378 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6524 -1.9723 1.3384 7 8 0.9510 -2.5094 0.5040 8 7 2.0681 -2.6657 2.4167 9 6 1.6741 -4.0668 2.5832 10 1 1.4210 -4.5503 1.6396 11 6 2.6476 -4.8815 3.4512 12 6 1.4103 -5.5542 4.0688 13 1 1.0840 -6.4449 3.5321 14 7 1.5189 -5.7686 5.5139 15 6 0.7871 -6.7743 6.1213 16 7 -0.0108 -7.5303 5.3817 17 6 -0.7196 -8.5034 5.9298 18 6 -0.6283 -8.7194 7.2959 19 6 -1.4255 -9.8140 7.9572 20 8 -0.5353 -10.7380 8.5865 21 14 -2.4401 -10.7054 6.6739 22 6 0.2117 -7.9065 8.0406 23 7 0.8968 -6.9543 7.4294 24 6 0.6285 -4.2854 3.6894 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6768 -1.7490 -1.2492 32 1 1.6767 -0.2074 -2.1392 33 1 3.1300 -0.7216 -1.2489 34 1 2.6277 -2.2368 3.0829 35 1 3.2760 -5.5643 2.8793 36 1 3.2149 -4.2753 4.1574 37 1 2.1036 -5.2059 6.0451 38 1 -1.3648 -9.1195 5.3210 39 1 -2.0874 -9.3796 8.7064 40 1 0.0842 -11.1637 7.9781 41 1 -1.5512 -11.2752 5.6297 42 1 -3.2305 -11.7879 7.3133 43 1 0.3052 -8.0483 9.1071 44 1 0.6428 -3.5165 4.4619 45 1 -0.3732 -4.4870 3.3099 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_13941096_12175864.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:37:33 Heat of formation + Delta-G solvation = -21.797793 kcal Electronic energy + Delta-G solvation = -26895.248313 eV Core-core repulsion = 22916.075496 eV Total energy + Delta-G solvation = -3979.172817 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.15842 -41.86462 -40.41394 -38.28582 -37.92253 -36.01557 -35.20089 -34.73438 -33.83206 -31.90947 -28.37519 -28.31108 -27.07224 -26.79314 -25.98838 -25.24038 -23.43844 -22.67482 -21.49448 -20.80884 -19.46230 -19.13012 -18.83134 -18.12239 -17.71463 -17.19427 -16.83544 -16.58082 -16.42105 -16.08888 -15.71839 -15.69421 -15.46667 -15.36263 -15.00384 -14.54691 -14.41651 -14.07968 -14.00616 -13.53741 -13.37423 -13.19746 -13.16266 -12.92992 -12.87598 -12.64620 -12.47902 -12.33898 -12.26286 -12.20256 -12.08212 -11.89968 -11.73037 -11.40357 -11.22438 -11.11232 -10.68072 -10.19846 -10.06324 -9.09985 -4.90821 0.04529 0.13733 1.12830 1.32269 1.60755 1.72279 1.85353 1.98521 2.77218 3.10430 3.20128 3.36055 3.42602 3.50184 3.67157 3.72109 3.73441 3.78471 3.80008 3.83719 3.89310 3.93662 4.24161 4.44060 4.56924 4.60573 4.61470 4.64807 4.65695 4.72023 4.75648 4.77626 4.83793 4.86811 4.88045 4.95261 5.00363 5.12037 5.23978 5.26430 5.32122 5.44869 5.58158 5.77469 6.03546 6.36673 6.41784 6.49445 7.26791 7.32822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.127 3.873 3 C -0.138 4.138 4 C -0.180 4.180 5 O -0.370 6.370 6 C 0.643 3.357 7 O -0.593 6.593 8 N -0.688 5.688 9 C 0.142 3.858 10 H 0.111 0.889 11 C -0.136 4.136 12 C 0.146 3.854 13 H 0.118 0.882 14 N -0.677 5.677 15 C 0.552 3.448 16 N -0.577 5.577 17 C 0.193 3.807 18 C -0.284 4.284 19 C -0.055 4.055 20 O -0.547 6.547 21 Si 0.757 3.243 22 C 0.213 3.787 23 N -0.589 5.589 24 C -0.161 4.161 25 H 0.061 0.939 26 H 0.086 0.914 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.098 0.902 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.086 0.914 33 H 0.062 0.938 34 H 0.418 0.582 35 H 0.095 0.905 36 H 0.113 0.887 37 H 0.420 0.580 38 H 0.187 0.813 39 H 0.132 0.868 40 H 0.385 0.615 41 H -0.280 1.280 42 H -0.300 1.300 43 H 0.183 0.817 44 H 0.093 0.907 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.764 2.321 -0.103 2.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.091 3.909 3 C -0.195 4.195 4 C -0.237 4.237 5 O -0.285 6.285 6 C 0.397 3.603 7 O -0.484 6.484 8 N -0.347 5.347 9 C 0.038 3.962 10 H 0.129 0.871 11 C -0.175 4.175 12 C 0.039 3.961 13 H 0.135 0.865 14 N -0.313 5.313 15 C 0.195 3.805 16 N -0.299 5.299 17 C 0.026 3.974 18 C -0.292 4.292 19 C -0.166 4.166 20 O -0.354 6.354 21 Si 0.662 3.338 22 C 0.045 3.955 23 N -0.311 5.311 24 C -0.202 4.202 25 H 0.080 0.920 26 H 0.105 0.895 27 H 0.083 0.917 28 H 0.089 0.911 29 H 0.117 0.883 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.105 0.895 33 H 0.081 0.919 34 H 0.255 0.745 35 H 0.114 0.886 36 H 0.131 0.869 37 H 0.259 0.741 38 H 0.203 0.797 39 H 0.149 0.851 40 H 0.235 0.765 41 H -0.207 1.207 42 H -0.228 1.228 43 H 0.199 0.801 44 H 0.111 0.889 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.476 2.367 -1.092 2.650 hybrid contribution 0.896 -0.862 1.097 1.658 sum 1.372 1.505 0.005 2.036 Atomic orbital electron populations 1.22475 0.94088 1.03718 1.03463 1.22346 0.94421 0.92573 0.81549 1.21893 1.02472 0.90924 1.04217 1.22474 1.01649 1.02284 0.97310 1.86312 1.71539 1.23359 1.47262 1.18416 0.78628 0.80780 0.82489 1.90908 1.42126 1.70911 1.44437 1.44669 1.54915 1.12071 1.23021 1.22253 0.96365 0.78816 0.98770 0.87071 1.23750 0.96585 0.98620 0.98558 1.22208 0.96959 0.97831 0.79068 0.86453 1.44141 1.46304 1.32861 1.07981 1.19690 0.87588 0.87794 0.85398 1.67948 1.12137 1.09657 1.40194 1.23177 0.91440 0.90590 0.92167 1.21692 1.06749 1.04599 0.96191 1.24837 0.95507 0.90519 1.05712 1.86587 1.50943 1.59060 1.38853 0.94311 0.80908 0.82615 0.75984 1.23140 0.86007 0.85264 1.01056 1.68008 1.28900 1.24441 1.09737 1.24025 0.99379 0.98343 0.98412 0.92031 0.89489 0.91733 0.91148 0.88342 0.91235 0.91706 0.89509 0.91905 0.74491 0.88593 0.86902 0.74079 0.79713 0.85065 0.76535 1.20662 1.22792 0.80054 0.88874 0.91291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.57 8.37 71.98 0.60 0.04 16 2 C 0.13 0.34 1.13 -10.79 -0.01 0.33 16 3 C -0.14 0.31 8.85 71.98 0.64 0.95 16 4 C -0.18 -0.52 8.37 71.98 0.60 0.09 16 5 O -0.37 -1.83 9.94 -55.45 -0.55 -2.39 16 6 C 0.64 3.79 8.06 129.79 1.05 4.83 16 7 O -0.59 -6.70 11.48 19.80 0.23 -6.47 16 8 N -0.69 0.70 5.36 -567.61 -3.04 -2.34 16 9 C 0.14 -0.37 4.24 45.52 0.19 -0.18 16 10 H 0.11 0.08 7.46 -2.39 -0.02 0.07 16 11 C -0.14 0.97 7.58 31.12 0.24 1.20 16 12 C 0.15 -0.48 4.24 45.52 0.19 -0.28 16 13 H 0.12 -0.12 7.37 -2.39 -0.02 -0.14 16 14 N -0.68 0.68 5.51 -327.93 -1.81 -1.13 16 15 C 0.55 2.21 8.43 261.49 2.20 4.41 16 16 N -0.58 -2.11 9.13 -197.98 -1.81 -3.91 16 17 C 0.19 -0.05 9.92 84.71 0.84 0.79 16 18 C -0.28 0.33 5.40 -19.69 -0.11 0.22 16 19 C -0.06 0.19 2.85 71.24 0.20 0.39 16 20 O -0.55 0.16 12.79 -148.98 -1.91 -1.74 16 21 Si 0.76 -3.13 29.87 68.60 2.05 -1.08 16 22 C 0.21 0.28 10.92 84.71 0.93 1.20 16 23 N -0.59 -2.77 10.46 -197.99 -2.07 -4.84 16 24 C -0.16 0.37 7.68 31.12 0.24 0.61 16 25 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 26 H 0.09 -0.02 8.14 -2.39 -0.02 -0.04 16 27 H 0.06 0.54 5.88 -2.38 -0.01 0.53 16 28 H 0.07 -0.18 8.14 -2.39 -0.02 -0.20 16 29 H 0.10 -0.54 8.14 -2.39 -0.02 -0.56 16 30 H 0.07 -0.17 8.14 -2.39 -0.02 -0.19 16 31 H 0.06 0.52 5.88 -2.38 -0.01 0.51 16 32 H 0.09 -0.04 8.14 -2.39 -0.02 -0.06 16 33 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 34 H 0.42 -2.41 8.84 -92.71 -0.82 -3.23 16 35 H 0.10 -0.73 8.14 -2.39 -0.02 -0.75 16 36 H 0.11 -1.17 8.10 -2.39 -0.02 -1.18 16 37 H 0.42 -1.56 8.84 -92.71 -0.82 -2.38 16 38 H 0.19 -1.00 5.04 -2.91 -0.01 -1.02 16 39 H 0.13 -0.73 7.96 -2.38 -0.02 -0.75 16 40 H 0.39 -2.03 8.70 -74.06 -0.64 -2.68 16 41 H -0.28 0.09 7.11 99.48 0.71 0.80 16 42 H -0.30 -1.18 7.11 99.48 0.71 -0.47 16 43 H 0.18 -0.40 8.06 -2.91 -0.02 -0.42 16 44 H 0.09 -0.25 8.14 -2.39 -0.02 -0.27 16 45 H 0.07 0.06 8.14 -2.39 -0.02 0.04 16 Total: 0.00 -19.14 368.34 -2.31 -21.44 By element: Atomic # 1 Polarization: -10.94 SS G_CDS: -1.20 Total: -12.14 kcal Atomic # 6 Polarization: 6.80 SS G_CDS: 7.80 Total: 14.61 kcal Atomic # 7 Polarization: -3.49 SS G_CDS: -8.73 Total: -12.22 kcal Atomic # 8 Polarization: -8.37 SS G_CDS: -2.23 Total: -10.60 kcal Atomic # 14 Polarization: -3.13 SS G_CDS: 2.05 Total: -1.08 kcal Total: -19.14 -2.31 -21.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_13941096_12175864.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.354 kcal (2) G-P(sol) polarization free energy of solvation -19.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds