Wall clock time and date at job start Mon Mar 8 2021 04:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47363 * 2 1 4 4 C 1.52998 * 109.47413 * 239.99600 * 2 1 3 5 5 O 1.45206 * 109.46717 * 119.99695 * 2 1 3 6 6 C 1.34639 * 116.99992 * 60.00129 * 5 2 1 7 7 O 1.21506 * 119.99834 * 0.27244 * 6 5 2 8 8 N 1.34772 * 119.99793 * 179.97438 * 6 5 2 9 9 C 1.46509 * 119.99793 * 179.97438 * 8 6 5 10 10 H 1.09005 * 112.84618 * 45.72003 * 9 8 6 11 11 C 1.53773 * 113.61304 * 177.02489 * 9 8 6 12 12 C 1.53784 * 87.08382 * 89.11825 * 11 9 8 13 13 H 1.08998 * 113.62081 * 139.98079 * 12 11 9 14 14 N 1.46499 * 113.68912 * 270.87537 * 12 11 9 15 15 C 1.39007 * 119.99610 * 258.55044 * 14 12 11 16 16 N 1.32403 * 119.70083 * 179.72587 * 15 14 12 17 17 C 1.31975 * 121.61824 * 179.71019 * 16 15 14 18 18 C 1.38017 * 120.85528 * 0.56308 * 17 16 15 19 19 C 1.50703 * 120.33694 * 179.74384 * 18 17 16 20 20 O 1.42897 * 109.47316 * 244.98267 * 19 18 17 21 21 Si 1.86304 * 109.46843 * 4.98333 * 19 18 17 22 22 C 1.38887 * 119.33248 * 359.72903 * 18 17 16 23 23 C 1.38301 * 118.50153 * 359.97438 * 22 18 17 24 24 C 1.53778 * 113.61320 * 274.52283 * 9 8 6 25 25 H 1.08997 * 109.47014 * 300.00357 * 1 2 3 26 26 H 1.09007 * 109.47009 * 59.99767 * 1 2 3 27 27 H 1.08996 * 109.47537 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47623 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.47052 * 299.99656 * 3 2 1 30 30 H 1.08997 * 109.47347 * 59.99846 * 3 2 1 31 31 H 1.09001 * 109.46762 * 300.00826 * 4 2 1 32 32 H 1.09004 * 109.46960 * 60.00073 * 4 2 1 33 33 H 1.08996 * 109.47262 * 180.02562 * 4 2 1 34 34 H 0.96992 * 120.00599 * 0.02562 * 8 6 5 35 35 H 1.08998 * 113.61609 * 203.65978 * 11 9 8 36 36 H 1.08995 * 113.62058 * 334.56917 * 11 9 8 37 37 H 0.97007 * 120.00358 * 78.54750 * 14 12 11 38 38 H 1.07996 * 119.57088 * 180.29180 * 17 16 15 39 39 H 1.09001 * 109.47204 * 124.97864 * 19 18 17 40 40 H 0.96703 * 113.99620 * 180.02562 * 20 19 18 41 41 H 1.48497 * 109.99810 * 178.67808 * 21 19 18 42 42 H 1.48497 * 110.00012 * 300.00004 * 21 19 18 43 43 H 1.08002 * 120.75074 * 180.02562 * 22 18 17 44 44 H 1.08001 * 120.44706 * 179.97438 * 23 22 18 45 45 H 1.08999 * 113.61322 * 25.43704 * 24 9 8 46 46 H 1.08996 * 113.61418 * 156.33369 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2491 5 8 2.0139 -0.6845 1.1857 6 6 1.6521 -1.9723 1.3385 7 8 0.9553 -2.5110 0.5014 8 7 2.0678 -2.6656 2.4168 9 6 1.6737 -4.0668 2.5834 10 1 1.7880 -4.6501 1.6697 11 6 2.2874 -4.7359 3.8245 12 6 1.0564 -4.2418 4.6026 13 1 0.6729 -4.9674 5.3199 14 7 1.2220 -2.9051 5.1790 15 6 1.5119 -2.7623 6.5309 16 7 1.6657 -1.5517 7.0446 17 6 1.9358 -1.3720 8.3238 18 6 2.0797 -2.4489 9.1749 19 6 2.3938 -2.2305 10.6326 20 8 3.6864 -2.7640 10.9265 21 14 2.3761 -0.4051 11.0048 22 6 1.9318 -3.7361 8.6746 23 6 1.6429 -3.8928 7.3312 24 6 0.3048 -4.2452 3.2610 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6768 1.9562 -0.8900 30 1 1.6767 1.9563 0.8899 31 1 1.6766 -1.7489 -1.2491 32 1 1.6767 -0.2075 -2.1392 33 1 3.1300 -0.7217 -1.2489 34 1 2.6273 -2.2368 3.0830 35 1 2.3494 -5.8216 3.7495 36 1 3.2219 -4.2790 4.1498 37 1 1.1295 -2.1197 4.6171 38 1 2.0500 -0.3695 8.7087 39 1 1.6453 -2.7334 11.2449 40 1 3.9547 -2.6588 11.8496 41 1 2.6530 -0.1779 12.4459 42 1 3.3922 0.2921 10.1762 43 1 2.0391 -4.5952 9.3202 44 1 1.5217 -4.8794 6.9089 45 1 -0.3611 -3.3921 3.1313 46 1 -0.1751 -5.1967 3.0319 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_13941096_13915762.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:37:38 Heat of formation + Delta-G solvation = -31.349653 kcal Electronic energy + Delta-G solvation = -27676.771082 eV Core-core repulsion = 23762.609976 eV Total energy + Delta-G solvation = -3914.161106 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.04673 -41.38314 -40.45098 -38.06751 -37.73113 -35.62976 -35.10105 -33.81327 -33.23436 -31.20500 -28.30742 -28.27389 -27.06669 -26.78933 -25.59214 -24.65165 -23.43514 -22.28997 -21.09039 -20.55792 -19.34018 -18.72675 -18.51284 -17.90351 -17.57218 -17.16964 -16.69926 -16.65567 -16.37480 -15.89708 -15.53079 -15.47472 -15.24369 -15.15718 -14.95089 -14.40935 -14.15213 -13.93564 -13.87885 -13.72140 -13.69481 -13.38651 -13.12507 -12.98267 -12.83107 -12.80772 -12.55686 -12.32353 -12.22970 -12.16324 -11.95194 -11.57322 -11.28090 -11.14652 -10.96016 -10.72059 -10.58074 -10.29737 -10.18107 -8.73029 -4.96840 0.26593 0.45053 1.14132 1.28540 1.58356 1.85694 1.95080 1.99519 2.79963 3.08894 3.18039 3.34821 3.43490 3.56652 3.63721 3.79458 3.82931 3.85083 3.90464 3.97375 3.98939 4.11747 4.31046 4.41629 4.48755 4.49568 4.55580 4.58143 4.60521 4.64859 4.71561 4.76977 4.80088 4.81624 4.83331 4.91393 4.94734 5.04330 5.10667 5.25292 5.34288 5.37753 5.46457 5.54901 5.60393 5.99578 6.37916 6.43684 6.50106 7.16701 7.41878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.137 3.863 3 C -0.142 4.142 4 C -0.184 4.184 5 O -0.364 6.364 6 C 0.652 3.348 7 O -0.561 6.561 8 N -0.699 5.699 9 C 0.140 3.860 10 H 0.101 0.899 11 C -0.160 4.160 12 C 0.128 3.872 13 H 0.102 0.898 14 N -0.707 5.707 15 C 0.407 3.593 16 N -0.537 5.537 17 C 0.158 3.842 18 C -0.186 4.186 19 C -0.060 4.060 20 O -0.538 6.538 21 Si 0.676 3.324 22 C -0.006 4.006 23 C -0.236 4.236 24 C -0.155 4.155 25 H 0.060 0.940 26 H 0.072 0.928 27 H 0.087 0.913 28 H 0.067 0.933 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.060 0.940 34 H 0.407 0.593 35 H 0.113 0.887 36 H 0.082 0.918 37 H 0.405 0.595 38 H 0.156 0.844 39 H 0.074 0.926 40 H 0.379 0.621 41 H -0.260 1.260 42 H -0.253 1.253 43 H 0.135 0.865 44 H 0.135 0.865 45 H 0.081 0.919 46 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.530 -1.288 1.873 2.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.101 3.899 3 C -0.200 4.200 4 C -0.241 4.241 5 O -0.279 6.279 6 C 0.406 3.594 7 O -0.450 6.450 8 N -0.360 5.360 9 C 0.035 3.965 10 H 0.119 0.881 11 C -0.199 4.199 12 C 0.021 3.979 13 H 0.119 0.881 14 N -0.340 5.340 15 C 0.172 3.828 16 N -0.254 5.254 17 C 0.000 4.000 18 C -0.191 4.191 19 C -0.171 4.171 20 O -0.345 6.345 21 Si 0.577 3.423 22 C -0.031 4.031 23 C -0.260 4.260 24 C -0.194 4.194 25 H 0.079 0.921 26 H 0.091 0.909 27 H 0.105 0.895 28 H 0.086 0.914 29 H 0.101 0.899 30 H 0.087 0.913 31 H 0.106 0.894 32 H 0.091 0.909 33 H 0.079 0.921 34 H 0.243 0.757 35 H 0.132 0.868 36 H 0.101 0.899 37 H 0.242 0.758 38 H 0.172 0.828 39 H 0.092 0.908 40 H 0.227 0.773 41 H -0.185 1.185 42 H -0.178 1.178 43 H 0.152 0.848 44 H 0.153 0.847 45 H 0.099 0.901 46 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -1.558 -0.397 0.432 1.665 hybrid contribution 1.135 -0.839 1.259 1.891 sum -0.423 -1.236 1.690 2.136 Atomic orbital electron populations 1.22521 0.93819 1.05014 1.02763 1.22121 0.94443 0.91559 0.81793 1.21881 1.02355 0.92350 1.03372 1.22526 1.01614 1.03448 0.96557 1.86322 1.71430 1.23361 1.46772 1.18066 0.78725 0.80689 0.81969 1.90923 1.40904 1.70318 1.42842 1.44537 1.55569 1.11923 1.23929 1.21808 0.95399 0.80075 0.99180 0.88101 1.23893 0.99217 1.02104 0.94720 1.21954 0.96384 0.84505 0.95069 0.88057 1.44273 1.76677 1.07602 1.05480 1.18360 0.89744 0.89287 0.85375 1.67163 1.20258 1.23478 1.14496 1.22195 0.92200 0.98196 0.87375 1.19920 1.09160 0.94634 0.95380 1.24522 0.86749 1.10613 0.95196 1.86597 1.33766 1.81286 1.32872 0.95167 0.90787 0.75866 0.80436 1.21185 0.90867 0.96824 0.94257 1.21467 1.11141 0.98785 0.94617 1.23777 0.97222 1.04443 0.93948 0.92072 0.90919 0.89453 0.91400 0.89918 0.91330 0.89414 0.90919 0.92135 0.75732 0.86848 0.89917 0.75763 0.82773 0.90775 0.77333 1.18478 1.17762 0.84753 0.84688 0.90075 0.87022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.26 8.37 37.16 0.31 0.05 16 2 C 0.14 0.21 1.13 -90.62 -0.10 0.11 16 3 C -0.14 0.04 8.85 37.16 0.33 0.37 16 4 C -0.18 -0.28 8.37 37.16 0.31 0.03 16 5 O -0.36 -0.98 9.94 -40.32 -0.40 -1.38 16 6 C 0.65 1.78 8.06 54.05 0.44 2.22 16 7 O -0.56 -2.69 11.81 -19.28 -0.23 -2.92 16 8 N -0.70 -0.01 4.37 -57.93 -0.25 -0.27 16 9 C 0.14 -0.20 4.01 -67.12 -0.27 -0.47 16 10 H 0.10 -0.07 8.04 -51.93 -0.42 -0.48 16 11 C -0.16 0.50 7.57 -25.92 -0.20 0.31 16 12 C 0.13 -0.31 3.94 -67.12 -0.26 -0.58 16 13 H 0.10 -0.34 6.39 -51.93 -0.33 -0.67 16 14 N -0.71 0.27 5.08 -53.14 -0.27 0.00 16 15 C 0.41 0.65 7.65 -155.02 -1.19 -0.53 16 16 N -0.54 -1.64 10.39 -12.44 -0.13 -1.77 16 17 C 0.16 0.31 9.84 -17.57 -0.17 0.14 16 18 C -0.19 -0.26 5.39 -104.46 -0.56 -0.82 16 19 C -0.06 0.01 2.81 36.01 0.10 0.11 16 20 O -0.54 -0.54 12.82 -35.23 -0.45 -0.99 16 21 Si 0.68 -0.60 29.88 -169.99 -5.08 -5.67 16 22 C -0.01 0.00 9.84 -39.32 -0.39 -0.39 16 23 C -0.24 -0.12 9.27 -39.23 -0.36 -0.48 16 24 C -0.15 0.32 7.60 -25.92 -0.20 0.12 16 25 H 0.06 0.08 8.14 -51.93 -0.42 -0.35 16 26 H 0.07 0.01 8.14 -51.92 -0.42 -0.41 16 27 H 0.09 0.29 5.89 -51.93 -0.31 -0.01 16 28 H 0.07 -0.02 8.14 -51.93 -0.42 -0.44 16 29 H 0.08 -0.14 8.14 -51.93 -0.42 -0.56 16 30 H 0.07 -0.02 8.14 -51.93 -0.42 -0.44 16 31 H 0.09 0.31 5.87 -51.93 -0.30 0.00 16 32 H 0.07 0.01 8.14 -51.93 -0.42 -0.41 16 33 H 0.06 0.08 8.14 -51.93 -0.42 -0.34 16 34 H 0.41 -0.30 7.98 -40.82 -0.33 -0.63 16 35 H 0.11 -0.54 8.14 -51.93 -0.42 -0.96 16 36 H 0.08 -0.18 8.13 -51.93 -0.42 -0.60 16 37 H 0.41 0.06 7.45 -40.82 -0.30 -0.24 16 38 H 0.16 0.04 4.87 -52.49 -0.26 -0.22 16 39 H 0.07 -0.14 7.96 -51.93 -0.41 -0.56 16 40 H 0.38 -1.11 8.74 45.56 0.40 -0.71 16 41 H -0.26 -0.27 7.11 56.52 0.40 0.13 16 42 H -0.25 -0.57 7.05 56.52 0.40 -0.17 16 43 H 0.13 -0.08 8.06 -52.49 -0.42 -0.50 16 44 H 0.14 -0.23 6.16 -52.49 -0.32 -0.55 16 45 H 0.08 -0.02 8.14 -51.93 -0.42 -0.44 16 46 H 0.11 -0.39 8.14 -51.93 -0.42 -0.81 16 LS Contribution 368.10 15.07 5.55 5.55 Total: 0.00 -7.31 368.10 -10.33 -17.65 By element: Atomic # 1 Polarization: -3.52 SS G_CDS: -6.86 Total: -10.38 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: -2.21 Total: 0.19 kcal Atomic # 7 Polarization: -1.39 SS G_CDS: -0.65 Total: -2.04 kcal Atomic # 8 Polarization: -4.20 SS G_CDS: -1.08 Total: -5.28 kcal Atomic # 14 Polarization: -0.60 SS G_CDS: -5.08 Total: -5.67 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -7.31 -10.33 -17.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_13941096_13915762.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.703 kcal (2) G-P(sol) polarization free energy of solvation -7.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds