Wall clock time and date at job start Mon Mar 8 2021 04:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47363 * 2 1 4 4 C 1.52998 * 109.47413 * 239.99600 * 2 1 3 5 5 O 1.45206 * 109.46717 * 119.99695 * 2 1 3 6 6 C 1.34639 * 116.99992 * 60.00129 * 5 2 1 7 7 O 1.21506 * 119.99834 * 0.27244 * 6 5 2 8 8 N 1.34772 * 119.99793 * 179.97438 * 6 5 2 9 9 C 1.46509 * 119.99793 * 179.97438 * 8 6 5 10 10 H 1.09005 * 112.84618 * 45.72003 * 9 8 6 11 11 C 1.53773 * 113.61304 * 177.02489 * 9 8 6 12 12 C 1.53784 * 87.08382 * 89.11825 * 11 9 8 13 13 H 1.08998 * 113.62081 * 139.98079 * 12 11 9 14 14 N 1.46499 * 113.68912 * 270.87537 * 12 11 9 15 15 C 1.39007 * 119.99610 * 258.55044 * 14 12 11 16 16 N 1.32403 * 119.70083 * 179.72587 * 15 14 12 17 17 C 1.31975 * 121.61824 * 179.71019 * 16 15 14 18 18 C 1.38017 * 120.85528 * 0.56308 * 17 16 15 19 19 C 1.50703 * 120.33694 * 179.74384 * 18 17 16 20 20 O 1.42897 * 109.47316 * 244.98267 * 19 18 17 21 21 Si 1.86304 * 109.46843 * 4.98333 * 19 18 17 22 22 C 1.38887 * 119.33248 * 359.72903 * 18 17 16 23 23 C 1.38301 * 118.50153 * 359.97438 * 22 18 17 24 24 C 1.53778 * 113.61320 * 274.52283 * 9 8 6 25 25 H 1.08997 * 109.47014 * 300.00357 * 1 2 3 26 26 H 1.09007 * 109.47009 * 59.99767 * 1 2 3 27 27 H 1.08996 * 109.47537 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47623 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.47052 * 299.99656 * 3 2 1 30 30 H 1.08997 * 109.47347 * 59.99846 * 3 2 1 31 31 H 1.09001 * 109.46762 * 300.00826 * 4 2 1 32 32 H 1.09004 * 109.46960 * 60.00073 * 4 2 1 33 33 H 1.08996 * 109.47262 * 180.02562 * 4 2 1 34 34 H 0.96992 * 120.00599 * 0.02562 * 8 6 5 35 35 H 1.08998 * 113.61609 * 203.65978 * 11 9 8 36 36 H 1.08995 * 113.62058 * 334.56917 * 11 9 8 37 37 H 0.97007 * 120.00358 * 78.54750 * 14 12 11 38 38 H 1.07996 * 119.57088 * 180.29180 * 17 16 15 39 39 H 1.09001 * 109.47204 * 124.97864 * 19 18 17 40 40 H 0.96703 * 113.99620 * 180.02562 * 20 19 18 41 41 H 1.48497 * 109.99810 * 178.67808 * 21 19 18 42 42 H 1.48497 * 110.00012 * 300.00004 * 21 19 18 43 43 H 1.08002 * 120.75074 * 180.02562 * 22 18 17 44 44 H 1.08001 * 120.44706 * 179.97438 * 23 22 18 45 45 H 1.08999 * 113.61322 * 25.43704 * 24 9 8 46 46 H 1.08996 * 113.61418 * 156.33369 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2491 5 8 2.0139 -0.6845 1.1857 6 6 1.6521 -1.9723 1.3385 7 8 0.9553 -2.5110 0.5014 8 7 2.0678 -2.6656 2.4168 9 6 1.6737 -4.0668 2.5834 10 1 1.7880 -4.6501 1.6697 11 6 2.2874 -4.7359 3.8245 12 6 1.0564 -4.2418 4.6026 13 1 0.6729 -4.9674 5.3199 14 7 1.2220 -2.9051 5.1790 15 6 1.5119 -2.7623 6.5309 16 7 1.6657 -1.5517 7.0446 17 6 1.9358 -1.3720 8.3238 18 6 2.0797 -2.4489 9.1749 19 6 2.3938 -2.2305 10.6326 20 8 3.6864 -2.7640 10.9265 21 14 2.3761 -0.4051 11.0048 22 6 1.9318 -3.7361 8.6746 23 6 1.6429 -3.8928 7.3312 24 6 0.3048 -4.2452 3.2610 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6768 1.9562 -0.8900 30 1 1.6767 1.9563 0.8899 31 1 1.6766 -1.7489 -1.2491 32 1 1.6767 -0.2075 -2.1392 33 1 3.1300 -0.7217 -1.2489 34 1 2.6273 -2.2368 3.0830 35 1 2.3494 -5.8216 3.7495 36 1 3.2219 -4.2790 4.1498 37 1 1.1295 -2.1197 4.6171 38 1 2.0500 -0.3695 8.7087 39 1 1.6453 -2.7334 11.2449 40 1 3.9547 -2.6588 11.8496 41 1 2.6530 -0.1779 12.4459 42 1 3.3922 0.2921 10.1762 43 1 2.0391 -4.5952 9.3202 44 1 1.5217 -4.8794 6.9089 45 1 -0.3611 -3.3921 3.1313 46 1 -0.1751 -5.1967 3.0319 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_13941096_13915762.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:37:37 Heat of formation + Delta-G solvation = -30.138967 kcal Electronic energy + Delta-G solvation = -27676.718583 eV Core-core repulsion = 23762.609976 eV Total energy + Delta-G solvation = -3914.108606 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.10788 -41.44139 -40.42404 -38.12897 -37.80650 -35.69145 -35.18828 -33.85589 -33.27116 -31.19364 -28.40322 -28.34407 -26.94025 -26.71210 -25.56873 -24.68282 -23.48413 -22.30786 -21.20661 -20.48192 -19.42329 -18.74938 -18.50181 -17.91387 -17.65747 -17.29219 -16.68133 -16.64185 -16.32558 -15.89948 -15.58678 -15.54094 -15.33941 -15.17973 -14.96830 -14.50507 -14.11996 -13.97354 -13.89192 -13.62629 -13.55960 -13.38422 -13.14893 -12.96221 -12.90758 -12.87007 -12.61798 -12.36584 -12.30769 -12.17100 -12.02969 -11.46060 -11.40945 -11.15899 -11.11013 -10.75988 -10.60531 -10.30816 -10.20183 -8.71989 -4.91911 0.22381 0.41560 1.08374 1.32575 1.59156 1.68125 1.95282 2.03842 2.77848 3.06018 3.32884 3.45445 3.53637 3.59430 3.70224 3.74951 3.77051 3.85294 3.90528 3.99366 4.07016 4.11725 4.35630 4.46439 4.50661 4.57686 4.59326 4.68245 4.70867 4.72687 4.75963 4.78821 4.79591 4.83622 4.84866 4.96491 4.97425 5.04216 5.08540 5.23406 5.23903 5.31116 5.37641 5.51783 5.58863 6.04375 6.28127 6.46931 6.63517 7.12924 7.26900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.128 3.872 3 C -0.139 4.139 4 C -0.180 4.180 5 O -0.372 6.372 6 C 0.646 3.354 7 O -0.586 6.586 8 N -0.689 5.689 9 C 0.128 3.872 10 H 0.093 0.907 11 C -0.143 4.143 12 C 0.128 3.872 13 H 0.119 0.881 14 N -0.706 5.706 15 C 0.395 3.605 16 N -0.566 5.566 17 C 0.141 3.859 18 C -0.196 4.196 19 C -0.064 4.064 20 O -0.559 6.559 21 Si 0.747 3.253 22 C -0.013 4.013 23 C -0.234 4.234 24 C -0.149 4.149 25 H 0.060 0.940 26 H 0.087 0.913 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.100 0.900 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.087 0.913 33 H 0.060 0.940 34 H 0.410 0.590 35 H 0.138 0.862 36 H 0.076 0.924 37 H 0.400 0.600 38 H 0.161 0.839 39 H 0.097 0.903 40 H 0.394 0.606 41 H -0.283 1.283 42 H -0.301 1.301 43 H 0.150 0.850 44 H 0.159 0.841 45 H 0.059 0.941 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.696 -2.275 2.370 3.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.092 3.908 3 C -0.196 4.196 4 C -0.237 4.237 5 O -0.287 6.287 6 C 0.399 3.601 7 O -0.476 6.476 8 N -0.350 5.350 9 C 0.024 3.976 10 H 0.111 0.889 11 C -0.182 4.182 12 C 0.022 3.978 13 H 0.136 0.864 14 N -0.338 5.338 15 C 0.159 3.841 16 N -0.283 5.283 17 C -0.015 4.015 18 C -0.201 4.201 19 C -0.174 4.174 20 O -0.369 6.369 21 Si 0.653 3.347 22 C -0.039 4.039 23 C -0.258 4.258 24 C -0.188 4.188 25 H 0.079 0.921 26 H 0.106 0.894 27 H 0.084 0.916 28 H 0.087 0.913 29 H 0.118 0.882 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.106 0.894 33 H 0.079 0.921 34 H 0.247 0.753 35 H 0.156 0.844 36 H 0.094 0.906 37 H 0.236 0.764 38 H 0.177 0.823 39 H 0.115 0.885 40 H 0.245 0.755 41 H -0.209 1.209 42 H -0.229 1.229 43 H 0.168 0.832 44 H 0.176 0.824 45 H 0.078 0.922 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -1.731 -1.406 0.955 2.426 hybrid contribution 1.217 -0.518 1.076 1.705 sum -0.514 -1.923 2.031 2.844 Atomic orbital electron populations 1.22466 0.93894 1.03777 1.03503 1.22349 0.94541 0.92479 0.81464 1.21899 1.02383 0.91064 1.04246 1.22474 1.01546 1.02343 0.97324 1.86326 1.71571 1.23439 1.47379 1.18295 0.78676 0.80748 0.82332 1.90906 1.42102 1.70764 1.43864 1.44601 1.54927 1.12361 1.23073 1.22020 0.96549 0.79245 0.99752 0.88888 1.23880 0.98344 1.03228 0.92798 1.22093 0.96710 0.83850 0.95168 0.86351 1.44387 1.76283 1.08275 1.04867 1.18614 0.89988 0.89354 0.86105 1.67131 1.21366 1.24661 1.15163 1.22373 0.92815 0.98891 0.87463 1.20121 1.09081 0.94802 0.96106 1.24626 0.86986 1.11016 0.94729 1.86548 1.34346 1.81481 1.34509 0.94327 0.88991 0.74214 0.77123 1.21455 0.90602 0.97107 0.94736 1.21711 1.10251 0.99395 0.94449 1.23783 0.96439 1.04489 0.94095 0.92060 0.89404 0.91600 0.91342 0.88184 0.91306 0.91596 0.89383 0.92108 0.75323 0.84383 0.90571 0.76393 0.82284 0.88478 0.75541 1.20931 1.22884 0.83223 0.82397 0.92179 0.85181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.69 8.37 71.98 0.60 -0.08 16 2 C 0.13 0.50 1.13 -10.80 -0.01 0.49 16 3 C -0.14 0.09 8.85 71.98 0.64 0.73 16 4 C -0.18 -0.70 8.37 71.98 0.60 -0.10 16 5 O -0.37 -2.53 9.94 -55.48 -0.55 -3.08 16 6 C 0.65 4.60 8.06 129.79 1.05 5.65 16 7 O -0.59 -6.78 11.81 19.82 0.23 -6.54 16 8 N -0.69 -0.84 4.37 -567.61 -2.48 -3.32 16 9 C 0.13 -0.32 4.01 45.51 0.18 -0.13 16 10 H 0.09 -0.06 8.04 -2.38 -0.02 -0.08 16 11 C -0.14 1.04 7.57 31.12 0.24 1.28 16 12 C 0.13 -0.73 3.94 45.52 0.18 -0.55 16 13 H 0.12 -1.04 6.39 -2.39 -0.02 -1.06 16 14 N -0.71 0.33 5.08 -322.05 -1.64 -1.31 16 15 C 0.39 1.35 7.65 133.06 1.02 2.36 16 16 N -0.57 -4.06 10.39 -193.27 -2.01 -6.07 16 17 C 0.14 0.69 9.84 84.62 0.83 1.53 16 18 C -0.20 -0.54 5.39 -19.76 -0.11 -0.64 16 19 C -0.06 0.06 2.81 71.24 0.20 0.26 16 20 O -0.56 -0.88 12.82 -148.98 -1.91 -2.79 16 21 Si 0.75 -0.94 29.88 68.60 2.05 1.11 16 22 C -0.01 -0.01 9.84 22.44 0.22 0.21 16 23 C -0.23 -0.03 9.27 22.50 0.21 0.18 16 24 C -0.15 0.62 7.60 31.12 0.24 0.86 16 25 H 0.06 0.21 8.14 -2.39 -0.02 0.19 16 26 H 0.09 0.03 8.14 -2.38 -0.02 0.01 16 27 H 0.07 0.57 5.89 -2.39 -0.01 0.55 16 28 H 0.07 -0.04 8.14 -2.39 -0.02 -0.06 16 29 H 0.10 -0.42 8.14 -2.39 -0.02 -0.44 16 30 H 0.07 -0.04 8.14 -2.39 -0.02 -0.06 16 31 H 0.07 0.58 5.87 -2.39 -0.01 0.57 16 32 H 0.09 0.03 8.14 -2.38 -0.02 0.01 16 33 H 0.06 0.21 8.14 -2.39 -0.02 0.19 16 34 H 0.41 -0.13 7.98 -92.71 -0.74 -0.87 16 35 H 0.14 -1.64 8.14 -2.39 -0.02 -1.66 16 36 H 0.08 -0.39 8.13 -2.39 -0.02 -0.41 16 37 H 0.40 0.57 7.45 -92.70 -0.69 -0.12 16 38 H 0.16 0.33 4.87 -2.91 -0.01 0.31 16 39 H 0.10 -0.52 7.96 -2.39 -0.02 -0.54 16 40 H 0.39 -2.52 8.74 -74.06 -0.65 -3.16 16 41 H -0.28 -0.67 7.11 99.48 0.71 0.03 16 42 H -0.30 -1.98 7.05 99.48 0.70 -1.28 16 43 H 0.15 -0.40 8.06 -2.91 -0.02 -0.42 16 44 H 0.16 -0.86 6.16 -2.91 -0.02 -0.87 16 45 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 46 H 0.13 -1.03 8.14 -2.39 -0.02 -1.05 16 Total: 0.00 -18.91 368.10 -1.24 -20.15 By element: Atomic # 1 Polarization: -9.17 SS G_CDS: -1.02 Total: -10.19 kcal Atomic # 6 Polarization: 5.94 SS G_CDS: 6.08 Total: 12.02 kcal Atomic # 7 Polarization: -4.57 SS G_CDS: -6.12 Total: -10.69 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: -2.23 Total: -12.41 kcal Atomic # 14 Polarization: -0.94 SS G_CDS: 2.05 Total: 1.11 kcal Total: -18.91 -1.24 -20.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_13941096_13915762.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.992 kcal (2) G-P(sol) polarization free energy of solvation -18.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds