Wall clock time and date at job start Mon Mar 8 2021 04:37:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47186 * 2 1 4 4 C 1.53000 * 109.47334 * 240.00039 * 2 1 3 5 5 O 1.45201 * 109.47251 * 119.99708 * 2 1 3 6 6 C 1.34638 * 116.99985 * 59.99909 * 5 2 1 7 7 O 1.21510 * 119.99720 * 0.02562 * 6 5 2 8 8 N 1.34772 * 120.00442 * 180.02562 * 6 5 2 9 9 C 1.46493 * 120.00288 * 180.02562 * 8 6 5 10 10 H 1.08997 * 112.85181 * 46.17501 * 9 8 6 11 11 C 1.53787 * 113.61571 * 177.48366 * 9 8 6 12 12 C 1.53780 * 87.08262 * 89.11223 * 11 9 8 13 13 H 1.08997 * 113.69097 * 139.99276 * 12 11 9 14 14 N 1.46499 * 113.61665 * 270.88652 * 12 11 9 15 15 C 1.38613 * 119.99751 * 255.31050 * 14 12 11 16 16 N 1.29679 * 124.95058 * 359.69415 * 15 14 12 17 17 C 1.32122 * 116.86693 * 179.81481 * 16 15 14 18 18 C 1.33330 * 114.57529 * 0.47283 * 17 16 15 19 19 C 1.50700 * 125.94732 * 179.75645 * 18 17 16 20 20 O 1.42904 * 109.47041 * 300.02412 * 19 18 17 21 21 Si 1.86294 * 109.46910 * 180.02562 * 19 18 17 22 22 S 1.70968 * 124.94615 * 180.02562 * 15 14 12 23 23 C 1.53783 * 113.61349 * 274.97817 * 9 8 6 24 24 H 1.08999 * 109.47181 * 300.00473 * 1 2 3 25 25 H 1.09003 * 109.47233 * 60.00282 * 1 2 3 26 26 H 1.08999 * 109.47415 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46933 * 180.02562 * 3 2 1 28 28 H 1.09003 * 109.46805 * 299.99980 * 3 2 1 29 29 H 1.08999 * 109.47447 * 59.99690 * 3 2 1 30 30 H 1.09008 * 109.46775 * 300.00034 * 4 2 1 31 31 H 1.08995 * 109.47220 * 59.99942 * 4 2 1 32 32 H 1.08995 * 109.47354 * 180.02562 * 4 2 1 33 33 H 0.97005 * 119.99237 * 0.02562 * 8 6 5 34 34 H 1.08994 * 113.61759 * 203.66366 * 11 9 8 35 35 H 1.09000 * 113.61241 * 334.56755 * 11 9 8 36 36 H 0.96995 * 120.00119 * 75.31200 * 14 12 11 37 37 H 1.08000 * 122.71484 * 180.22801 * 17 16 15 38 38 H 1.08992 * 109.47459 * 60.02128 * 19 18 17 39 39 H 0.96701 * 113.99872 * 300.00408 * 20 19 18 40 40 H 1.48503 * 110.00335 * 179.97438 * 21 19 18 41 41 H 1.48502 * 109.99899 * 301.31339 * 21 19 18 42 42 H 1.08997 * 113.61408 * 25.43564 * 23 9 8 43 43 H 1.09000 * 113.61421 * 156.25433 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6522 -1.9722 1.3384 7 8 0.9516 -2.5096 0.5037 8 7 2.0671 -2.6654 2.4172 9 6 1.6740 -4.0667 2.5832 10 1 1.7973 -4.6518 1.6719 11 6 2.2778 -4.7323 3.8312 12 6 1.0392 -4.2385 4.5974 13 1 0.6497 -4.9623 5.3132 14 7 1.1992 -2.9002 5.1714 15 6 1.4101 -2.7509 6.5332 16 7 1.4769 -3.7257 7.3859 17 6 1.6878 -3.4006 8.6490 18 6 1.7945 -2.0908 8.8742 19 6 2.0296 -1.4395 10.2126 20 8 0.9615 -1.7760 11.1003 21 14 2.1006 0.4098 9.9994 22 16 1.6121 -1.2543 7.3346 23 6 0.2995 -4.2462 3.2491 24 1 -0.3633 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9564 0.8899 30 1 1.6766 -1.7490 -1.2492 31 1 1.6767 -0.2074 -2.1392 32 1 3.1300 -0.7216 -1.2490 33 1 2.6262 -2.2362 3.0838 34 1 2.3424 -5.8180 3.7590 35 1 3.2087 -4.2730 4.1638 36 1 1.1575 -2.1186 4.5985 37 1 1.7635 -4.1362 9.4362 38 1 2.9728 -1.7938 10.6284 39 1 0.0901 -1.4906 10.7932 40 1 2.3315 1.0641 11.3124 41 1 3.1871 0.7707 9.0536 42 1 -0.3668 -3.3945 3.1118 43 1 -0.1774 -5.1984 3.0167 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_13941096_15704118.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:37:42 Heat of formation + Delta-G solvation = -26.171559 kcal Electronic energy + Delta-G solvation = -26199.468451 eV Core-core repulsion = 22374.684131 eV Total energy + Delta-G solvation = -3824.784320 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 328.129 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.05111 -41.05593 -40.25546 -38.04895 -37.73349 -35.58724 -35.11034 -33.68713 -31.18512 -28.37211 -28.33418 -27.15265 -26.81627 -26.02642 -24.55081 -23.32078 -21.39580 -21.24497 -20.41107 -19.58574 -19.18961 -18.12875 -17.67611 -17.31168 -17.03097 -16.79562 -16.45547 -16.17549 -15.97898 -15.70907 -15.54674 -15.39759 -15.20246 -14.88693 -14.45969 -14.02878 -13.82568 -13.72982 -13.45408 -13.18027 -13.08282 -12.89886 -12.87582 -12.86913 -12.59613 -12.35890 -12.29728 -12.22062 -12.04572 -11.57968 -11.35033 -11.24534 -11.02846 -10.81458 -10.28652 -10.25832 -10.18266 -8.81346 -5.14841 -0.07526 -0.01515 0.65783 1.05863 1.24197 1.56650 1.78418 1.89105 2.00143 2.03005 3.01351 3.17512 3.37599 3.42455 3.60833 3.63727 3.72821 3.78497 3.90083 3.92388 3.99130 4.45997 4.46370 4.51794 4.52543 4.55133 4.58930 4.62770 4.69814 4.72702 4.74046 4.77951 4.81058 4.85561 4.88554 5.03636 5.08292 5.26149 5.31957 5.40981 5.51974 5.80388 5.95329 6.29224 6.50820 6.96133 7.33565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.137 3.863 3 C -0.142 4.142 4 C -0.185 4.185 5 O -0.365 6.365 6 C 0.651 3.349 7 O -0.558 6.558 8 N -0.701 5.701 9 C 0.137 3.863 10 H 0.102 0.898 11 C -0.154 4.154 12 C 0.135 3.865 13 H 0.111 0.889 14 N -0.678 5.678 15 C 0.325 3.675 16 N -0.546 5.546 17 C 0.119 3.881 18 C -0.305 4.305 19 C -0.010 4.010 20 O -0.537 6.537 21 Si 0.654 3.346 22 S 0.089 5.911 23 C -0.156 4.156 24 H 0.060 0.940 25 H 0.072 0.928 26 H 0.087 0.913 27 H 0.067 0.933 28 H 0.082 0.918 29 H 0.067 0.933 30 H 0.087 0.913 31 H 0.072 0.928 32 H 0.060 0.940 33 H 0.404 0.596 34 H 0.114 0.886 35 H 0.080 0.920 36 H 0.412 0.588 37 H 0.177 0.823 38 H 0.122 0.878 39 H 0.380 0.620 40 H -0.235 1.235 41 H -0.241 1.241 42 H 0.079 0.921 43 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.735 2.083 -1.293 2.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.101 3.899 3 C -0.200 4.200 4 C -0.242 4.242 5 O -0.280 6.280 6 C 0.404 3.596 7 O -0.446 6.446 8 N -0.361 5.361 9 C 0.033 3.967 10 H 0.120 0.880 11 C -0.193 4.193 12 C 0.027 3.973 13 H 0.129 0.871 14 N -0.318 5.318 15 C -0.045 4.045 16 N -0.271 5.271 17 C -0.032 4.032 18 C -0.428 4.428 19 C -0.125 4.125 20 O -0.342 6.342 21 Si 0.555 3.445 22 S 0.338 5.662 23 C -0.195 4.195 24 H 0.079 0.921 25 H 0.091 0.909 26 H 0.106 0.894 27 H 0.086 0.914 28 H 0.101 0.899 29 H 0.086 0.914 30 H 0.106 0.894 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.240 0.760 34 H 0.132 0.868 35 H 0.099 0.901 36 H 0.251 0.749 37 H 0.194 0.806 38 H 0.139 0.861 39 H 0.228 0.772 40 H -0.158 1.158 41 H -0.165 1.165 42 H 0.098 0.902 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -0.190 2.722 -1.904 3.327 hybrid contribution 0.580 -0.660 0.559 1.041 sum 0.390 2.062 -1.345 2.493 Atomic orbital electron populations 1.22527 0.93784 1.05063 1.02788 1.22132 0.94449 0.91542 0.81774 1.21888 1.02370 0.92306 1.03393 1.22527 1.01644 1.03455 0.96560 1.86307 1.71523 1.23336 1.46861 1.18080 0.78807 0.80698 0.81986 1.90936 1.40512 1.70321 1.42875 1.44564 1.55681 1.12060 1.23816 1.21900 0.95580 0.79866 0.99398 0.88047 1.23826 0.99097 1.02245 0.94157 1.21990 0.96157 0.84078 0.95058 0.87134 1.43836 1.77843 1.08575 1.01515 1.23712 0.97260 0.93047 0.90476 1.66479 1.26321 1.32425 1.01838 1.21340 0.96058 0.93958 0.91855 1.25606 1.21838 0.96783 0.98566 1.24111 0.93197 1.09617 0.85531 1.86515 1.18055 1.83492 1.46136 0.94974 0.89734 0.75867 0.83970 1.84031 1.72091 1.08878 1.01154 1.23818 0.97078 1.04460 0.94158 0.92103 0.90861 0.89407 0.91379 0.89878 0.91354 0.89413 0.90870 0.92102 0.76042 0.86787 0.90120 0.74945 0.80633 0.86104 0.77245 1.15845 1.16477 0.90204 0.86933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.09 8.37 37.16 0.31 0.22 16 2 C 0.14 0.08 1.13 -90.62 -0.10 -0.02 16 3 C -0.14 0.18 8.85 37.16 0.33 0.51 16 4 C -0.18 -0.15 8.37 37.16 0.31 0.16 16 5 O -0.37 -0.52 9.94 -40.32 -0.40 -0.92 16 6 C 0.65 1.09 8.06 54.05 0.44 1.53 16 7 O -0.56 -2.24 11.82 -19.28 -0.23 -2.46 16 8 N -0.70 0.73 4.33 -57.93 -0.25 0.48 16 9 C 0.14 -0.24 4.00 -67.12 -0.27 -0.50 16 10 H 0.10 -0.09 8.05 -51.93 -0.42 -0.51 16 11 C -0.15 0.41 7.57 -25.92 -0.20 0.22 16 12 C 0.14 -0.23 4.41 -67.12 -0.30 -0.53 16 13 H 0.11 -0.06 7.73 -51.93 -0.40 -0.46 16 14 N -0.68 0.84 5.12 -54.99 -0.28 0.56 16 15 C 0.33 0.21 8.09 -87.68 -0.71 -0.49 16 16 N -0.55 -1.21 9.87 -15.21 -0.15 -1.36 16 17 C 0.12 0.17 11.22 -19.14 -0.21 -0.05 16 18 C -0.31 -0.11 5.74 -36.02 -0.21 -0.31 16 19 C -0.01 0.00 2.99 36.01 0.11 0.11 16 20 O -0.54 0.00 12.87 -35.23 -0.45 -0.45 16 21 Si 0.65 -0.55 31.05 -169.99 -5.28 -5.83 16 22 S 0.09 -0.03 20.57 -107.50 -2.21 -2.25 16 23 C -0.16 0.32 7.62 -25.92 -0.20 0.12 16 24 H 0.06 0.01 8.14 -51.93 -0.42 -0.42 16 25 H 0.07 -0.05 8.14 -51.93 -0.42 -0.47 16 26 H 0.09 0.22 5.88 -51.93 -0.31 -0.08 16 27 H 0.07 -0.09 8.14 -51.93 -0.42 -0.51 16 28 H 0.08 -0.20 8.14 -51.93 -0.42 -0.63 16 29 H 0.07 -0.10 8.14 -51.93 -0.42 -0.52 16 30 H 0.09 0.25 5.88 -51.92 -0.31 -0.05 16 31 H 0.07 -0.03 8.14 -51.93 -0.42 -0.46 16 32 H 0.06 0.04 8.14 -51.93 -0.42 -0.38 16 33 H 0.40 -0.96 7.94 -40.82 -0.32 -1.28 16 34 H 0.11 -0.43 8.14 -51.93 -0.42 -0.85 16 35 H 0.08 -0.16 8.13 -51.93 -0.42 -0.58 16 36 H 0.41 -0.92 7.30 -40.82 -0.30 -1.22 16 37 H 0.18 0.07 8.06 -52.49 -0.42 -0.36 16 38 H 0.12 -0.03 7.96 -51.93 -0.41 -0.45 16 39 H 0.38 -1.35 8.70 45.56 0.40 -0.95 16 40 H -0.24 -0.42 7.11 56.52 0.40 -0.02 16 41 H -0.24 -0.32 7.11 56.52 0.40 0.09 16 42 H 0.08 -0.06 8.14 -51.93 -0.42 -0.48 16 43 H 0.11 -0.35 8.14 -51.93 -0.42 -0.77 16 LS Contribution 363.25 15.07 5.47 5.47 Total: 0.00 -6.34 363.25 -10.82 -17.16 By element: Atomic # 1 Polarization: -5.02 SS G_CDS: -6.34 Total: -11.36 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: -0.70 Total: 0.95 kcal Atomic # 7 Polarization: 0.36 SS G_CDS: -0.68 Total: -0.32 kcal Atomic # 8 Polarization: -2.75 SS G_CDS: -1.08 Total: -3.83 kcal Atomic # 14 Polarization: -0.55 SS G_CDS: -5.28 Total: -5.83 kcal Atomic # 16 Polarization: -0.03 SS G_CDS: -2.21 Total: -2.25 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -6.34 -10.82 -17.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_13941096_15704118.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.010 kcal (2) G-P(sol) polarization free energy of solvation -6.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds