Wall clock time and date at job start Mon Mar 8 2021 04:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47186 * 2 1 4 4 C 1.53000 * 109.47334 * 240.00039 * 2 1 3 5 5 O 1.45201 * 109.47251 * 119.99708 * 2 1 3 6 6 C 1.34638 * 116.99985 * 59.99909 * 5 2 1 7 7 O 1.21510 * 119.99720 * 0.02562 * 6 5 2 8 8 N 1.34772 * 120.00442 * 180.02562 * 6 5 2 9 9 C 1.46493 * 120.00288 * 180.02562 * 8 6 5 10 10 H 1.08997 * 112.85181 * 46.17501 * 9 8 6 11 11 C 1.53787 * 113.61571 * 177.48366 * 9 8 6 12 12 C 1.53780 * 87.08262 * 89.11223 * 11 9 8 13 13 H 1.08997 * 113.69097 * 139.99276 * 12 11 9 14 14 N 1.46499 * 113.61665 * 270.88652 * 12 11 9 15 15 C 1.38613 * 119.99751 * 255.31050 * 14 12 11 16 16 N 1.29679 * 124.95058 * 359.69415 * 15 14 12 17 17 C 1.32122 * 116.86693 * 179.81481 * 16 15 14 18 18 C 1.33330 * 114.57529 * 0.47283 * 17 16 15 19 19 C 1.50700 * 125.94732 * 179.75645 * 18 17 16 20 20 O 1.42904 * 109.47041 * 300.02412 * 19 18 17 21 21 Si 1.86294 * 109.46910 * 180.02562 * 19 18 17 22 22 S 1.70968 * 124.94615 * 180.02562 * 15 14 12 23 23 C 1.53783 * 113.61349 * 274.97817 * 9 8 6 24 24 H 1.08999 * 109.47181 * 300.00473 * 1 2 3 25 25 H 1.09003 * 109.47233 * 60.00282 * 1 2 3 26 26 H 1.08999 * 109.47415 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46933 * 180.02562 * 3 2 1 28 28 H 1.09003 * 109.46805 * 299.99980 * 3 2 1 29 29 H 1.08999 * 109.47447 * 59.99690 * 3 2 1 30 30 H 1.09008 * 109.46775 * 300.00034 * 4 2 1 31 31 H 1.08995 * 109.47220 * 59.99942 * 4 2 1 32 32 H 1.08995 * 109.47354 * 180.02562 * 4 2 1 33 33 H 0.97005 * 119.99237 * 0.02562 * 8 6 5 34 34 H 1.08994 * 113.61759 * 203.66366 * 11 9 8 35 35 H 1.09000 * 113.61241 * 334.56755 * 11 9 8 36 36 H 0.96995 * 120.00119 * 75.31200 * 14 12 11 37 37 H 1.08000 * 122.71484 * 180.22801 * 17 16 15 38 38 H 1.08992 * 109.47459 * 60.02128 * 19 18 17 39 39 H 0.96701 * 113.99872 * 300.00408 * 20 19 18 40 40 H 1.48503 * 110.00335 * 179.97438 * 21 19 18 41 41 H 1.48502 * 109.99899 * 301.31339 * 21 19 18 42 42 H 1.08997 * 113.61408 * 25.43564 * 23 9 8 43 43 H 1.09000 * 113.61421 * 156.25433 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6522 -1.9722 1.3384 7 8 0.9516 -2.5096 0.5037 8 7 2.0671 -2.6654 2.4172 9 6 1.6740 -4.0667 2.5832 10 1 1.7973 -4.6518 1.6719 11 6 2.2778 -4.7323 3.8312 12 6 1.0392 -4.2385 4.5974 13 1 0.6497 -4.9623 5.3132 14 7 1.1992 -2.9002 5.1714 15 6 1.4101 -2.7509 6.5332 16 7 1.4769 -3.7257 7.3859 17 6 1.6878 -3.4006 8.6490 18 6 1.7945 -2.0908 8.8742 19 6 2.0296 -1.4395 10.2126 20 8 0.9615 -1.7760 11.1003 21 14 2.1006 0.4098 9.9994 22 16 1.6121 -1.2543 7.3346 23 6 0.2995 -4.2462 3.2491 24 1 -0.3633 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9564 0.8899 30 1 1.6766 -1.7490 -1.2492 31 1 1.6767 -0.2074 -2.1392 32 1 3.1300 -0.7216 -1.2490 33 1 2.6262 -2.2362 3.0838 34 1 2.3424 -5.8180 3.7590 35 1 3.2087 -4.2730 4.1638 36 1 1.1575 -2.1186 4.5985 37 1 1.7635 -4.1362 9.4362 38 1 2.9728 -1.7938 10.6284 39 1 0.0901 -1.4906 10.7932 40 1 2.3315 1.0641 11.3124 41 1 3.1871 0.7707 9.0536 42 1 -0.3668 -3.3945 3.1118 43 1 -0.1774 -5.1984 3.0167 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_13941096_15704118.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:37:41 Heat of formation + Delta-G solvation = -23.909309 kcal Electronic energy + Delta-G solvation = -26199.370353 eV Core-core repulsion = 22374.684131 eV Total energy + Delta-G solvation = -3824.686222 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 328.129 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.08046 -41.05436 -40.24526 -38.07948 -37.74995 -35.61948 -35.11442 -33.66994 -31.18916 -28.38347 -28.31777 -27.08583 -26.71972 -26.00203 -24.55750 -23.32287 -21.36283 -21.27640 -20.39853 -19.54629 -19.24122 -18.11927 -17.70016 -17.33340 -17.03471 -16.75178 -16.44821 -16.13080 -15.94543 -15.71991 -15.57563 -15.40534 -15.21814 -14.91264 -14.48108 -14.07216 -13.73008 -13.60195 -13.36668 -13.14174 -13.00405 -12.92181 -12.88556 -12.85033 -12.60482 -12.46143 -12.32671 -12.20268 -12.02618 -11.48700 -11.40460 -11.20147 -11.14152 -10.82858 -10.29670 -10.24609 -10.18461 -8.78955 -5.11224 -0.09034 -0.01082 0.64768 1.06128 1.26359 1.57013 1.68513 1.87965 1.95883 2.08526 3.05049 3.29946 3.47976 3.52376 3.65824 3.72181 3.75857 3.78346 3.92104 3.92619 4.08828 4.47841 4.48361 4.59227 4.60022 4.67456 4.67852 4.72492 4.73269 4.75207 4.79831 4.85542 4.86277 4.93831 4.94292 5.05229 5.13842 5.25662 5.27903 5.37460 5.53695 5.85076 6.03657 6.28488 6.72224 6.95906 7.27199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.129 3.871 3 C -0.139 4.139 4 C -0.181 4.181 5 O -0.369 6.369 6 C 0.646 3.354 7 O -0.585 6.585 8 N -0.689 5.689 9 C 0.134 3.866 10 H 0.095 0.905 11 C -0.140 4.140 12 C 0.135 3.865 13 H 0.101 0.899 14 N -0.672 5.672 15 C 0.316 3.684 16 N -0.569 5.569 17 C 0.104 3.896 18 C -0.306 4.306 19 C -0.012 4.012 20 O -0.550 6.550 21 Si 0.726 3.274 22 S 0.112 5.888 23 C -0.148 4.148 24 H 0.064 0.936 25 H 0.085 0.915 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.097 0.903 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.086 0.914 32 H 0.060 0.940 33 H 0.411 0.589 34 H 0.129 0.871 35 H 0.078 0.922 36 H 0.417 0.583 37 H 0.179 0.821 38 H 0.120 0.880 39 H 0.395 0.605 40 H -0.272 1.272 41 H -0.267 1.267 42 H 0.067 0.933 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.718 2.619 -1.449 3.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.093 3.907 3 C -0.196 4.196 4 C -0.239 4.239 5 O -0.284 6.284 6 C 0.400 3.600 7 O -0.475 6.475 8 N -0.350 5.350 9 C 0.030 3.970 10 H 0.113 0.887 11 C -0.179 4.179 12 C 0.027 3.973 13 H 0.119 0.881 14 N -0.312 5.312 15 C -0.054 4.054 16 N -0.295 5.295 17 C -0.046 4.046 18 C -0.429 4.429 19 C -0.126 4.126 20 O -0.358 6.358 21 Si 0.629 3.371 22 S 0.362 5.638 23 C -0.188 4.188 24 H 0.083 0.917 25 H 0.104 0.896 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.116 0.884 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.105 0.895 32 H 0.079 0.921 33 H 0.248 0.752 34 H 0.147 0.853 35 H 0.096 0.904 36 H 0.256 0.744 37 H 0.196 0.804 38 H 0.137 0.863 39 H 0.245 0.755 40 H -0.197 1.197 41 H -0.193 1.193 42 H 0.086 0.914 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -0.185 3.253 -2.062 3.856 hybrid contribution 0.577 -0.818 0.614 1.174 sum 0.392 2.436 -1.448 2.860 Atomic orbital electron populations 1.22478 0.93865 1.03807 1.03604 1.22338 0.94527 0.92459 0.81378 1.21902 1.02405 0.90957 1.04322 1.22485 1.01583 1.02335 0.97452 1.86313 1.71554 1.23204 1.47294 1.18279 0.78672 0.80808 0.82232 1.90925 1.41781 1.70825 1.43960 1.44551 1.55140 1.12171 1.23149 1.21966 0.96122 0.79420 0.99517 0.88735 1.23787 0.98355 1.02977 0.92822 1.21993 0.96804 0.83718 0.94810 0.88058 1.43872 1.77278 1.09023 1.01000 1.23887 0.97171 0.93393 0.90935 1.66474 1.27355 1.33363 1.02317 1.21459 0.96722 0.94546 0.91893 1.25708 1.21363 0.96713 0.99128 1.24199 0.93243 1.09952 0.85208 1.86481 1.19054 1.83756 1.46465 0.94129 0.88237 0.73931 0.80753 1.83904 1.71673 1.07886 1.00371 1.23799 0.96632 1.04589 0.93732 0.91712 0.89598 0.91621 0.91312 0.88404 0.90976 0.91664 0.89532 0.92076 0.75172 0.85314 0.90376 0.74405 0.80367 0.86315 0.75511 1.19732 1.19318 0.91433 0.85727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.24 8.37 71.98 0.60 0.36 16 2 C 0.13 0.16 1.13 -10.79 -0.01 0.15 16 3 C -0.14 0.47 8.85 71.98 0.64 1.10 16 4 C -0.18 -0.38 8.37 71.98 0.60 0.23 16 5 O -0.37 -1.19 9.94 -55.48 -0.55 -1.74 16 6 C 0.65 2.68 8.06 129.79 1.05 3.73 16 7 O -0.58 -5.48 11.82 19.81 0.23 -5.25 16 8 N -0.69 1.17 4.33 -567.62 -2.46 -1.29 16 9 C 0.13 -0.43 4.00 45.52 0.18 -0.25 16 10 H 0.09 -0.12 8.05 -2.39 -0.02 -0.14 16 11 C -0.14 0.79 7.57 31.12 0.24 1.03 16 12 C 0.13 -0.46 4.41 45.52 0.20 -0.25 16 13 H 0.10 -0.09 7.73 -2.39 -0.02 -0.11 16 14 N -0.67 1.61 5.12 -327.90 -1.68 -0.07 16 15 C 0.32 0.44 8.09 179.32 1.45 1.89 16 16 N -0.57 -2.72 9.87 -202.02 -1.99 -4.71 16 17 C 0.10 0.33 11.22 83.54 0.94 1.27 16 18 C -0.31 -0.22 5.74 24.58 0.14 -0.08 16 19 C -0.01 0.01 2.99 71.24 0.21 0.22 16 20 O -0.55 0.13 12.87 -148.98 -1.92 -1.79 16 21 Si 0.73 -1.22 31.05 68.60 2.13 0.91 16 22 S 0.11 -0.11 20.57 -56.49 -1.16 -1.27 16 23 C -0.15 0.57 7.62 31.12 0.24 0.81 16 24 H 0.06 0.02 8.14 -2.39 -0.02 0.00 16 25 H 0.09 -0.14 8.14 -2.39 -0.02 -0.16 16 26 H 0.06 0.42 5.88 -2.39 -0.01 0.40 16 27 H 0.07 -0.22 8.14 -2.39 -0.02 -0.24 16 28 H 0.10 -0.62 8.14 -2.39 -0.02 -0.64 16 29 H 0.07 -0.28 8.14 -2.39 -0.02 -0.30 16 30 H 0.06 0.47 5.88 -2.38 -0.01 0.45 16 31 H 0.09 -0.10 8.14 -2.39 -0.02 -0.12 16 32 H 0.06 0.10 8.14 -2.39 -0.02 0.08 16 33 H 0.41 -1.93 7.94 -92.70 -0.74 -2.67 16 34 H 0.13 -1.07 8.14 -2.39 -0.02 -1.09 16 35 H 0.08 -0.35 8.13 -2.39 -0.02 -0.37 16 36 H 0.42 -1.85 7.30 -92.71 -0.68 -2.53 16 37 H 0.18 0.27 8.06 -2.91 -0.02 0.25 16 38 H 0.12 -0.05 7.96 -2.39 -0.02 -0.07 16 39 H 0.39 -3.00 8.70 -74.06 -0.64 -3.64 16 40 H -0.27 -1.18 7.11 99.48 0.71 -0.48 16 41 H -0.27 -0.73 7.11 99.48 0.71 -0.02 16 42 H 0.07 -0.06 8.14 -2.39 -0.02 -0.07 16 43 H 0.12 -0.78 8.14 -2.39 -0.02 -0.80 16 Total: 0.00 -15.37 363.25 -1.89 -17.27 By element: Atomic # 1 Polarization: -11.29 SS G_CDS: -0.96 Total: -12.26 kcal Atomic # 6 Polarization: 3.74 SS G_CDS: 6.47 Total: 10.21 kcal Atomic # 7 Polarization: 0.06 SS G_CDS: -6.13 Total: -6.08 kcal Atomic # 8 Polarization: -6.54 SS G_CDS: -2.23 Total: -8.78 kcal Atomic # 14 Polarization: -1.22 SS G_CDS: 2.13 Total: 0.91 kcal Atomic # 16 Polarization: -0.11 SS G_CDS: -1.16 Total: -1.27 kcal Total: -15.37 -1.89 -17.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_13941096_15704118.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.643 kcal (2) G-P(sol) polarization free energy of solvation -15.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds