Wall clock time and date at job start Mon Mar 8 2021 04:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33323 * 125.94774 * 2 1 4 4 C 1.50703 * 122.71331 * 359.97438 * 3 2 1 5 5 O 1.42901 * 109.46612 * 29.99956 * 4 3 2 6 6 Si 1.86299 * 109.47271 * 150.00027 * 4 3 2 7 7 N 1.32131 * 114.58036 * 179.74867 * 3 2 1 8 8 C 1.29687 * 116.86083 * 0.47227 * 7 3 2 9 9 N 1.38608 * 124.94575 * 179.80848 * 8 7 3 10 10 C 1.46505 * 119.99703 * 179.72316 * 9 8 7 11 11 H 1.08999 * 112.90823 * 336.25197 * 10 9 8 12 12 C 1.53780 * 113.61612 * 107.50717 * 10 9 8 13 13 C 1.53772 * 87.08175 * 139.97763 * 12 10 9 14 14 H 1.09008 * 113.69307 * 89.13003 * 13 12 10 15 15 N 1.46505 * 113.61812 * 220.02064 * 13 12 10 16 16 C 1.34777 * 119.99722 * 252.50331 * 15 13 12 17 17 O 1.21513 * 120.00316 * 359.97438 * 16 15 13 18 18 O 1.34638 * 119.99672 * 179.72257 * 16 15 13 19 19 C 1.45202 * 116.99776 * 180.27362 * 18 16 15 20 20 C 1.53000 * 109.46964 * 60.00058 * 19 18 16 21 21 C 1.53008 * 109.46858 * 179.97438 * 19 18 16 22 22 C 1.52988 * 109.47138 * 299.99572 * 19 18 16 23 23 C 1.53782 * 113.61026 * 205.00630 * 10 9 8 24 24 S 1.70966 * 110.10322 * 359.54943 * 8 7 3 25 25 H 1.09000 * 109.46769 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47671 * 299.97377 * 1 2 3 27 27 H 1.08998 * 109.47184 * 59.98322 * 1 2 3 28 28 H 1.08997 * 109.47204 * 270.00089 * 4 3 2 29 29 H 0.96709 * 113.99732 * 179.97438 * 5 4 3 30 30 H 1.48501 * 110.00200 * 178.68407 * 6 4 3 31 31 H 1.48509 * 109.99790 * 300.00042 * 6 4 3 32 32 H 0.96992 * 120.00120 * 359.72718 * 9 8 7 33 33 H 1.08999 * 113.61012 * 25.43060 * 12 10 9 34 34 H 1.08994 * 113.61618 * 254.53147 * 12 10 9 35 35 H 0.97000 * 119.99795 * 72.49447 * 15 13 12 36 36 H 1.08997 * 109.47363 * 60.00315 * 20 19 18 37 37 H 1.09005 * 109.46795 * 180.02562 * 20 19 18 38 38 H 1.09001 * 109.46811 * 299.99419 * 20 19 18 39 39 H 1.08996 * 109.46984 * 60.00080 * 21 19 18 40 40 H 1.08996 * 109.46584 * 179.97438 * 21 19 18 41 41 H 1.08998 * 109.47272 * 300.00133 * 21 19 18 42 42 H 1.09001 * 109.47346 * 60.00146 * 22 19 18 43 43 H 1.09005 * 109.47300 * 180.02562 * 22 19 18 44 44 H 1.09004 * 109.47621 * 300.00303 * 22 19 18 45 45 H 1.08994 * 113.61682 * 105.47361 * 23 10 9 46 46 H 1.08999 * 113.61621 * 334.56494 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2897 1.0793 0.0000 4 6 1.7413 2.4830 -0.0006 5 8 0.4809 2.5022 0.6726 6 14 2.9318 3.6152 0.8778 7 7 3.5850 0.8189 0.0053 8 6 3.9315 -0.4308 0.0002 9 7 5.2385 -0.8924 0.0006 10 6 5.5066 -2.3327 0.0006 11 1 4.6806 -2.9180 0.4046 12 6 6.0365 -2.8607 -1.3430 13 6 6.9931 -3.7468 -0.5279 14 1 6.5749 -4.7192 -0.2678 15 7 8.3380 -3.8409 -1.1013 16 6 8.7386 -4.9821 -1.6960 17 8 7.9845 -5.9330 -1.7563 18 8 9.9725 -5.0667 -2.2279 19 6 10.3339 -6.3241 -2.8579 20 6 9.3691 -6.6133 -4.0096 21 6 11.7616 -6.2308 -3.4005 22 6 10.2519 -7.4525 -1.8282 23 6 6.8746 -2.7045 0.5967 24 16 2.5413 -1.4260 0.0001 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5134 0.8902 27 1 -0.3633 0.5141 -0.8898 28 1 1.6094 2.8212 -1.0283 29 1 0.0686 3.3762 0.7108 30 1 2.4177 5.0082 0.8564 31 1 3.1201 3.1648 2.2803 32 1 5.9755 -0.2619 0.0010 33 1 6.5448 -2.1033 -1.9398 34 1 5.2978 -3.4244 -1.9126 35 1 8.9401 -3.0819 -1.0530 36 1 9.4276 -5.8093 -4.7432 37 1 9.6401 -7.5574 -4.4822 38 1 8.3519 -6.6796 -3.6234 39 1 12.4491 -6.0245 -2.5803 40 1 12.0330 -7.1748 -3.8729 41 1 11.8196 -5.4269 -4.1342 42 1 9.2348 -7.5189 -1.4420 43 1 10.5237 -8.3964 -2.3010 44 1 10.9393 -7.2465 -1.0077 45 1 6.8123 -3.1423 1.5929 46 1 7.6119 -1.9045 0.5301 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_13941096_15704122.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:37:46 Heat of formation + Delta-G solvation = -34.785552 kcal Electronic energy + Delta-G solvation = -27340.432421 eV Core-core repulsion = 23359.736952 eV Total energy + Delta-G solvation = -3980.695470 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 342.145 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.87816 -41.02525 -40.48319 -38.12482 -37.68516 -35.95004 -35.11929 -33.80893 -32.32989 -29.26742 -28.34059 -28.30015 -27.05918 -26.12115 -25.37829 -24.16668 -23.04107 -21.70285 -21.01563 -20.04401 -19.34522 -19.05274 -18.42363 -17.71609 -17.29824 -17.10356 -16.92573 -16.39934 -16.27733 -15.79554 -15.54475 -15.42581 -15.25788 -15.05773 -14.43244 -14.28162 -14.01839 -13.90387 -13.81217 -13.65147 -13.44218 -13.30150 -13.14262 -13.01770 -12.88219 -12.84107 -12.75369 -12.60225 -12.38647 -12.25082 -12.17316 -12.12481 -11.57163 -11.31652 -11.04665 -10.98771 -10.56303 -10.42069 -10.24293 -9.92408 -8.55432 -4.66870 0.09586 0.22851 0.83562 1.12061 1.38936 1.77051 1.83084 1.87639 1.99997 2.17193 3.03351 3.05810 3.18363 3.22747 3.55189 3.57028 3.76287 3.82034 3.93582 3.95886 4.14625 4.25519 4.36322 4.38631 4.41951 4.45005 4.54751 4.58191 4.60482 4.61950 4.76954 4.77115 4.81571 4.89365 4.91910 4.91959 4.96999 5.07318 5.17028 5.24291 5.35230 5.41096 5.43879 5.56868 5.61376 6.27085 6.36313 6.47449 6.97407 7.38356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C -0.229 4.229 3 C 0.103 3.897 4 C -0.042 4.042 5 O -0.535 6.535 6 Si 0.719 3.281 7 N -0.538 5.538 8 C 0.319 3.681 9 N -0.681 5.681 10 C 0.132 3.868 11 H 0.113 0.887 12 C -0.169 4.169 13 C 0.144 3.856 14 H 0.126 0.874 15 N -0.700 5.700 16 C 0.651 3.349 17 O -0.565 6.565 18 O -0.365 6.365 19 C 0.137 3.863 20 C -0.184 4.184 21 C -0.142 4.142 22 C -0.184 4.184 23 C -0.149 4.149 24 S 0.100 5.900 25 H 0.057 0.943 26 H 0.087 0.913 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.382 0.618 30 H -0.265 1.265 31 H -0.263 1.263 32 H 0.414 0.586 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.407 0.593 36 H 0.060 0.940 37 H 0.072 0.928 38 H 0.087 0.913 39 H 0.067 0.933 40 H 0.082 0.918 41 H 0.067 0.933 42 H 0.087 0.913 43 H 0.072 0.928 44 H 0.060 0.940 45 H 0.091 0.909 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.738 0.227 -1.275 3.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.351 4.351 3 C -0.027 4.027 4 C -0.154 4.154 5 O -0.342 6.342 6 Si 0.619 3.381 7 N -0.264 5.264 8 C -0.053 4.053 9 N -0.322 5.322 10 C 0.025 3.975 11 H 0.131 0.869 12 C -0.209 4.209 13 C 0.039 3.961 14 H 0.144 0.856 15 N -0.359 5.359 16 C 0.405 3.595 17 O -0.453 6.453 18 O -0.280 6.280 19 C 0.100 3.900 20 C -0.241 4.241 21 C -0.199 4.199 22 C -0.241 4.241 23 C -0.188 4.188 24 S 0.349 5.651 25 H 0.076 0.924 26 H 0.105 0.895 27 H 0.090 0.910 28 H 0.099 0.901 29 H 0.230 0.770 30 H -0.191 1.191 31 H -0.187 1.187 32 H 0.253 0.747 33 H 0.115 0.885 34 H 0.103 0.897 35 H 0.243 0.757 36 H 0.079 0.921 37 H 0.091 0.909 38 H 0.106 0.894 39 H 0.086 0.914 40 H 0.101 0.899 41 H 0.086 0.914 42 H 0.106 0.894 43 H 0.091 0.909 44 H 0.079 0.921 45 H 0.110 0.890 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 2.948 -1.271 -0.608 3.267 hybrid contribution -0.749 1.599 0.008 1.766 sum 2.198 0.328 -0.600 2.302 Atomic orbital electron populations 1.20089 0.86510 1.01396 1.03704 1.25125 1.01396 0.92618 1.15966 1.18723 0.86527 0.94966 1.02458 1.23996 0.92103 0.97781 1.01488 1.86544 1.33207 1.35028 1.79416 0.93700 0.87362 0.74986 0.82035 1.65596 1.16835 1.16634 1.27344 1.23199 0.91866 0.91277 0.98914 1.43811 1.01771 1.06252 1.80334 1.22337 0.97758 0.79937 0.97438 0.86890 1.24157 0.99460 0.99733 0.97591 1.22261 0.80755 0.99723 0.93321 0.85598 1.44639 1.16517 1.14159 1.60562 1.18147 0.80792 0.83374 0.77205 1.90922 1.55124 1.37019 1.62282 1.86310 1.31349 1.40914 1.69380 1.22125 0.95477 0.80061 0.92302 1.22524 1.01752 1.02427 0.97436 1.21882 0.92933 1.03388 1.01731 1.22524 1.04858 0.97749 0.99006 1.23790 0.96402 0.98962 0.99663 1.83958 0.96504 1.10578 1.74085 0.92446 0.89487 0.91002 0.90088 0.76987 1.19097 1.18742 0.74726 0.88494 0.89703 0.75720 0.92113 0.90911 0.89414 0.91390 0.89910 0.91384 0.89413 0.90908 0.92111 0.88997 0.88225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.09 8.91 36.00 0.32 0.23 16 2 C -0.23 -0.68 6.50 -36.03 -0.23 -0.91 16 3 C 0.10 0.34 5.96 -84.18 -0.50 -0.16 16 4 C -0.04 -0.06 2.93 36.01 0.11 0.05 16 5 O -0.53 -0.49 9.80 -35.23 -0.35 -0.83 16 6 Si 0.72 0.95 32.08 -169.99 -5.45 -4.51 16 7 N -0.54 -1.68 8.94 -11.36 -0.10 -1.78 16 8 C 0.32 0.51 8.24 -87.68 -0.72 -0.21 16 9 N -0.68 0.94 5.51 -54.99 -0.30 0.64 16 10 C 0.13 -0.39 4.23 -67.12 -0.28 -0.67 16 11 H 0.11 -0.32 7.06 -51.93 -0.37 -0.69 16 12 C -0.17 0.44 7.68 -25.92 -0.20 0.24 16 13 C 0.14 -0.36 4.24 -67.12 -0.28 -0.64 16 14 H 0.13 -0.17 7.46 -51.92 -0.39 -0.55 16 15 N -0.70 0.98 5.36 -57.93 -0.31 0.66 16 16 C 0.65 1.23 8.06 54.06 0.44 1.66 16 17 O -0.56 -2.37 11.48 -19.28 -0.22 -2.59 16 18 O -0.36 -0.65 9.94 -40.32 -0.40 -1.05 16 19 C 0.14 0.12 1.13 -90.62 -0.10 0.02 16 20 C -0.18 -0.18 8.37 37.16 0.31 0.13 16 21 C -0.14 0.15 8.85 37.16 0.33 0.48 16 22 C -0.18 -0.16 8.37 37.15 0.31 0.15 16 23 C -0.15 0.63 7.58 -25.91 -0.20 0.44 16 24 S 0.10 0.14 21.69 -107.50 -2.33 -2.20 16 25 H 0.06 0.03 8.14 -51.93 -0.42 -0.39 16 26 H 0.09 0.17 6.74 -51.93 -0.35 -0.18 16 27 H 0.07 0.07 8.14 -51.93 -0.42 -0.35 16 28 H 0.08 -0.01 7.96 -51.93 -0.41 -0.43 16 29 H 0.38 -1.19 8.74 45.56 0.40 -0.79 16 30 H -0.27 -0.61 7.11 56.52 0.40 -0.21 16 31 H -0.26 -1.38 7.11 56.52 0.40 -0.98 16 32 H 0.41 -1.05 8.85 -40.82 -0.36 -1.41 16 33 H 0.10 -0.25 8.14 -51.93 -0.42 -0.67 16 34 H 0.08 -0.15 8.14 -51.93 -0.42 -0.57 16 35 H 0.41 -1.39 8.84 -40.82 -0.36 -1.75 16 36 H 0.06 0.05 8.14 -51.93 -0.42 -0.38 16 37 H 0.07 -0.02 8.14 -51.93 -0.42 -0.45 16 38 H 0.09 0.26 5.88 -51.93 -0.31 -0.04 16 39 H 0.07 -0.08 8.14 -51.93 -0.42 -0.50 16 40 H 0.08 -0.19 8.14 -51.93 -0.42 -0.61 16 41 H 0.07 -0.07 8.14 -51.93 -0.42 -0.50 16 42 H 0.09 0.25 5.88 -51.93 -0.31 -0.05 16 43 H 0.07 -0.03 8.14 -51.93 -0.42 -0.45 16 44 H 0.06 0.04 8.14 -51.93 -0.42 -0.38 16 45 H 0.09 -0.40 8.14 -51.93 -0.42 -0.83 16 46 H 0.10 -0.53 8.09 -51.93 -0.42 -0.95 16 LS Contribution 383.27 15.07 5.78 5.78 Total: 0.00 -7.63 383.27 -11.55 -19.18 By element: Atomic # 1 Polarization: -6.95 SS G_CDS: -7.14 Total: -14.10 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: -0.71 Total: 0.81 kcal Atomic # 7 Polarization: 0.24 SS G_CDS: -0.72 Total: -0.48 kcal Atomic # 8 Polarization: -3.51 SS G_CDS: -0.97 Total: -4.48 kcal Atomic # 14 Polarization: 0.95 SS G_CDS: -5.45 Total: -4.51 kcal Atomic # 16 Polarization: 0.14 SS G_CDS: -2.33 Total: -2.20 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -7.63 -11.55 -19.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_13941096_15704122.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.609 kcal (2) G-P(sol) polarization free energy of solvation -7.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds