Wall clock time and date at job start Mon Mar 8 2021 04:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33323 * 125.94774 * 2 1 4 4 C 1.50703 * 122.71331 * 359.97438 * 3 2 1 5 5 O 1.42901 * 109.46612 * 29.99956 * 4 3 2 6 6 Si 1.86299 * 109.47271 * 150.00027 * 4 3 2 7 7 N 1.32131 * 114.58036 * 179.74867 * 3 2 1 8 8 C 1.29687 * 116.86083 * 0.47227 * 7 3 2 9 9 N 1.38608 * 124.94575 * 179.80848 * 8 7 3 10 10 C 1.46505 * 119.99703 * 179.72316 * 9 8 7 11 11 H 1.08999 * 112.90823 * 336.25197 * 10 9 8 12 12 C 1.53780 * 113.61612 * 107.50717 * 10 9 8 13 13 C 1.53772 * 87.08175 * 139.97763 * 12 10 9 14 14 H 1.09008 * 113.69307 * 89.13003 * 13 12 10 15 15 N 1.46505 * 113.61812 * 220.02064 * 13 12 10 16 16 C 1.34777 * 119.99722 * 252.50331 * 15 13 12 17 17 O 1.21513 * 120.00316 * 359.97438 * 16 15 13 18 18 O 1.34638 * 119.99672 * 179.72257 * 16 15 13 19 19 C 1.45202 * 116.99776 * 180.27362 * 18 16 15 20 20 C 1.53000 * 109.46964 * 60.00058 * 19 18 16 21 21 C 1.53008 * 109.46858 * 179.97438 * 19 18 16 22 22 C 1.52988 * 109.47138 * 299.99572 * 19 18 16 23 23 C 1.53782 * 113.61026 * 205.00630 * 10 9 8 24 24 S 1.70966 * 110.10322 * 359.54943 * 8 7 3 25 25 H 1.09000 * 109.46769 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47671 * 299.97377 * 1 2 3 27 27 H 1.08998 * 109.47184 * 59.98322 * 1 2 3 28 28 H 1.08997 * 109.47204 * 270.00089 * 4 3 2 29 29 H 0.96709 * 113.99732 * 179.97438 * 5 4 3 30 30 H 1.48501 * 110.00200 * 178.68407 * 6 4 3 31 31 H 1.48509 * 109.99790 * 300.00042 * 6 4 3 32 32 H 0.96992 * 120.00120 * 359.72718 * 9 8 7 33 33 H 1.08999 * 113.61012 * 25.43060 * 12 10 9 34 34 H 1.08994 * 113.61618 * 254.53147 * 12 10 9 35 35 H 0.97000 * 119.99795 * 72.49447 * 15 13 12 36 36 H 1.08997 * 109.47363 * 60.00315 * 20 19 18 37 37 H 1.09005 * 109.46795 * 180.02562 * 20 19 18 38 38 H 1.09001 * 109.46811 * 299.99419 * 20 19 18 39 39 H 1.08996 * 109.46984 * 60.00080 * 21 19 18 40 40 H 1.08996 * 109.46584 * 179.97438 * 21 19 18 41 41 H 1.08998 * 109.47272 * 300.00133 * 21 19 18 42 42 H 1.09001 * 109.47346 * 60.00146 * 22 19 18 43 43 H 1.09005 * 109.47300 * 180.02562 * 22 19 18 44 44 H 1.09004 * 109.47621 * 300.00303 * 22 19 18 45 45 H 1.08994 * 113.61682 * 105.47361 * 23 10 9 46 46 H 1.08999 * 113.61621 * 334.56494 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2897 1.0793 0.0000 4 6 1.7413 2.4830 -0.0006 5 8 0.4809 2.5022 0.6726 6 14 2.9318 3.6152 0.8778 7 7 3.5850 0.8189 0.0053 8 6 3.9315 -0.4308 0.0002 9 7 5.2385 -0.8924 0.0006 10 6 5.5066 -2.3327 0.0006 11 1 4.6806 -2.9180 0.4046 12 6 6.0365 -2.8607 -1.3430 13 6 6.9931 -3.7468 -0.5279 14 1 6.5749 -4.7192 -0.2678 15 7 8.3380 -3.8409 -1.1013 16 6 8.7386 -4.9821 -1.6960 17 8 7.9845 -5.9330 -1.7563 18 8 9.9725 -5.0667 -2.2279 19 6 10.3339 -6.3241 -2.8579 20 6 9.3691 -6.6133 -4.0096 21 6 11.7616 -6.2308 -3.4005 22 6 10.2519 -7.4525 -1.8282 23 6 6.8746 -2.7045 0.5967 24 16 2.5413 -1.4260 0.0001 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5134 0.8902 27 1 -0.3633 0.5141 -0.8898 28 1 1.6094 2.8212 -1.0283 29 1 0.0686 3.3762 0.7108 30 1 2.4177 5.0082 0.8564 31 1 3.1201 3.1648 2.2803 32 1 5.9755 -0.2619 0.0010 33 1 6.5448 -2.1033 -1.9398 34 1 5.2978 -3.4244 -1.9126 35 1 8.9401 -3.0819 -1.0530 36 1 9.4276 -5.8093 -4.7432 37 1 9.6401 -7.5574 -4.4822 38 1 8.3519 -6.6796 -3.6234 39 1 12.4491 -6.0245 -2.5803 40 1 12.0330 -7.1748 -3.8729 41 1 11.8196 -5.4269 -4.1342 42 1 9.2348 -7.5189 -1.4420 43 1 10.5237 -8.3964 -2.3010 44 1 10.9393 -7.2465 -1.0077 45 1 6.8123 -3.1423 1.5929 46 1 7.6119 -1.9045 0.5301 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_13941096_15704122.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:37:45 Heat of formation + Delta-G solvation = -33.444655 kcal Electronic energy + Delta-G solvation = -27340.374276 eV Core-core repulsion = 23359.736952 eV Total energy + Delta-G solvation = -3980.637324 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 342.145 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.91934 -41.07651 -40.43214 -38.17736 -37.74061 -35.98289 -35.16643 -33.81231 -32.37955 -29.33967 -28.37075 -28.30640 -26.83288 -26.10268 -25.45489 -24.21636 -23.02907 -21.62971 -21.05145 -20.06954 -19.40586 -19.07788 -18.42587 -17.75589 -17.33669 -17.18730 -16.89573 -16.38281 -16.28871 -15.83859 -15.59650 -15.46085 -15.32038 -15.02909 -14.44979 -14.27349 -14.16082 -13.96309 -13.73437 -13.53890 -13.37559 -13.36653 -13.15312 -13.11840 -12.92590 -12.87050 -12.67028 -12.58294 -12.38030 -12.30496 -12.20673 -12.08387 -11.67835 -11.39813 -11.11678 -11.03740 -10.69067 -10.47315 -10.20156 -10.00751 -8.60495 -4.78722 -0.02079 0.14909 0.72504 1.13273 1.27884 1.61645 1.72772 1.84569 1.89656 2.04467 3.07318 3.16291 3.33165 3.40085 3.73517 3.73803 3.78632 3.79886 3.89731 3.94102 4.13878 4.31276 4.34394 4.41266 4.53882 4.57540 4.60882 4.65915 4.68924 4.76240 4.82118 4.83502 4.85890 4.87344 4.88309 4.93850 4.98187 5.07949 5.14337 5.26767 5.28255 5.31848 5.40459 5.58835 5.66834 6.34417 6.39891 6.62747 6.89271 7.33440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 C -0.254 4.254 3 C 0.086 3.914 4 C -0.043 4.043 5 O -0.546 6.546 6 Si 0.778 3.222 7 N -0.557 5.557 8 C 0.313 3.687 9 N -0.670 5.670 10 C 0.131 3.869 11 H 0.113 0.887 12 C -0.163 4.163 13 C 0.140 3.860 14 H 0.113 0.887 15 N -0.687 5.687 16 C 0.643 3.357 17 O -0.593 6.593 18 O -0.370 6.370 19 C 0.128 3.872 20 C -0.180 4.180 21 C -0.138 4.138 22 C -0.180 4.180 23 C -0.132 4.132 24 S 0.112 5.888 25 H 0.063 0.937 26 H 0.079 0.921 27 H 0.075 0.925 28 H 0.100 0.900 29 H 0.398 0.602 30 H -0.275 1.275 31 H -0.320 1.320 32 H 0.421 0.579 33 H 0.100 0.900 34 H 0.074 0.926 35 H 0.419 0.581 36 H 0.061 0.939 37 H 0.085 0.915 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.097 0.903 41 H 0.069 0.931 42 H 0.065 0.935 43 H 0.085 0.915 44 H 0.062 0.938 45 H 0.099 0.901 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.636 0.497 -1.693 4.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.376 4.376 3 C -0.043 4.043 4 C -0.155 4.155 5 O -0.356 6.356 6 Si 0.684 3.316 7 N -0.285 5.285 8 C -0.058 4.058 9 N -0.310 5.310 10 C 0.025 3.975 11 H 0.131 0.869 12 C -0.204 4.204 13 C 0.036 3.964 14 H 0.131 0.869 15 N -0.346 5.346 16 C 0.397 3.603 17 O -0.484 6.484 18 O -0.284 6.284 19 C 0.092 3.908 20 C -0.237 4.237 21 C -0.195 4.195 22 C -0.237 4.237 23 C -0.170 4.170 24 S 0.361 5.639 25 H 0.082 0.918 26 H 0.098 0.902 27 H 0.094 0.906 28 H 0.118 0.882 29 H 0.249 0.751 30 H -0.202 1.202 31 H -0.249 1.249 32 H 0.261 0.739 33 H 0.119 0.881 34 H 0.093 0.907 35 H 0.256 0.744 36 H 0.080 0.920 37 H 0.104 0.896 38 H 0.083 0.917 39 H 0.089 0.911 40 H 0.116 0.884 41 H 0.088 0.912 42 H 0.083 0.917 43 H 0.104 0.896 44 H 0.081 0.919 45 H 0.118 0.882 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 3.864 -0.970 -1.045 4.118 hybrid contribution -1.009 1.477 0.185 1.798 sum 2.854 0.506 -0.860 3.024 Atomic orbital electron populations 1.20050 0.85893 1.01740 1.03499 1.25389 1.02201 0.93266 1.16768 1.19095 0.86858 0.95932 1.02454 1.24057 0.92120 0.96845 1.02524 1.86514 1.33011 1.36651 1.79444 0.93027 0.86502 0.73590 0.78481 1.65640 1.16898 1.17314 1.28621 1.23482 0.92912 0.91173 0.98255 1.43928 1.00955 1.06982 1.79174 1.22409 0.98567 0.79043 0.97528 0.86935 1.24105 0.99132 0.99555 0.97610 1.22278 0.80245 0.99655 0.94246 0.86909 1.44644 1.16949 1.13555 1.59476 1.18422 0.80676 0.83846 0.77362 1.90910 1.55812 1.38229 1.63449 1.86313 1.31270 1.41422 1.69437 1.22332 0.96525 0.79814 0.92158 1.22475 1.00541 1.03209 0.97523 1.21894 0.91483 1.04321 1.01840 1.22475 1.03463 0.98570 0.99229 1.23728 0.95631 0.98514 0.99174 1.83826 0.96134 1.09885 1.74088 0.91821 0.90207 0.90627 0.88216 0.75079 1.20175 1.24867 0.73904 0.88110 0.90728 0.74385 0.91993 0.89575 0.91697 0.91149 0.88414 0.91202 0.91655 0.89586 0.91903 0.88221 0.86415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.18 8.91 71.24 0.63 0.46 16 2 C -0.25 -1.63 6.50 24.57 0.16 -1.47 16 3 C 0.09 0.61 5.96 41.40 0.25 0.86 16 4 C -0.04 -0.12 2.93 71.24 0.21 0.09 16 5 O -0.55 -1.06 9.80 -148.98 -1.46 -2.52 16 6 Si 0.78 2.49 32.08 68.60 2.20 4.69 16 7 N -0.56 -3.66 8.94 -189.86 -1.70 -5.36 16 8 C 0.31 1.03 8.24 179.32 1.48 2.51 16 9 N -0.67 2.18 5.51 -327.89 -1.81 0.38 16 10 C 0.13 -0.83 4.23 45.52 0.19 -0.64 16 11 H 0.11 -0.65 7.06 -2.39 -0.02 -0.67 16 12 C -0.16 0.86 7.68 31.12 0.24 1.10 16 13 C 0.14 -0.69 4.24 45.52 0.19 -0.50 16 14 H 0.11 -0.19 7.46 -2.38 -0.02 -0.21 16 15 N -0.69 1.94 5.36 -567.59 -3.04 -1.10 16 16 C 0.64 2.90 8.06 129.79 1.05 3.95 16 17 O -0.59 -5.91 11.48 19.80 0.23 -5.69 16 18 O -0.37 -1.45 9.94 -55.47 -0.55 -2.00 16 19 C 0.13 0.25 1.13 -10.80 -0.01 0.23 16 20 C -0.18 -0.44 8.37 71.98 0.60 0.17 16 21 C -0.14 0.39 8.85 71.98 0.64 1.03 16 22 C -0.18 -0.40 8.37 71.98 0.60 0.20 16 23 C -0.13 1.26 7.58 31.12 0.24 1.50 16 24 S 0.11 0.34 21.69 -56.49 -1.23 -0.88 16 25 H 0.06 0.10 8.14 -2.39 -0.02 0.08 16 26 H 0.08 0.37 6.74 -2.39 -0.02 0.36 16 27 H 0.08 0.17 8.14 -2.39 -0.02 0.15 16 28 H 0.10 -0.11 7.96 -2.39 -0.02 -0.13 16 29 H 0.40 -2.57 8.74 -74.05 -0.65 -3.21 16 30 H -0.28 -1.24 7.11 99.48 0.71 -0.54 16 31 H -0.32 -4.13 7.11 99.48 0.71 -3.42 16 32 H 0.42 -2.51 8.85 -92.71 -0.82 -3.34 16 33 H 0.10 -0.57 8.14 -2.39 -0.02 -0.59 16 34 H 0.07 -0.20 8.14 -2.39 -0.02 -0.22 16 35 H 0.42 -3.16 8.84 -92.71 -0.82 -3.98 16 36 H 0.06 0.11 8.14 -2.39 -0.02 0.10 16 37 H 0.09 -0.07 8.14 -2.38 -0.02 -0.09 16 38 H 0.06 0.49 5.88 -2.39 -0.01 0.48 16 39 H 0.07 -0.22 8.14 -2.39 -0.02 -0.24 16 40 H 0.10 -0.57 8.14 -2.39 -0.02 -0.59 16 41 H 0.07 -0.21 8.14 -2.39 -0.02 -0.23 16 42 H 0.06 0.47 5.88 -2.39 -0.01 0.46 16 43 H 0.09 -0.08 8.14 -2.38 -0.02 -0.10 16 44 H 0.06 0.09 8.14 -2.38 -0.02 0.07 16 45 H 0.10 -1.01 8.14 -2.39 -0.02 -1.03 16 46 H 0.12 -1.50 8.09 -2.39 -0.02 -1.52 16 Total: 0.00 -19.33 383.27 -2.12 -21.44 By element: Atomic # 1 Polarization: -17.21 SS G_CDS: -1.22 Total: -18.43 kcal Atomic # 6 Polarization: 3.01 SS G_CDS: 6.46 Total: 9.48 kcal Atomic # 7 Polarization: 0.46 SS G_CDS: -6.55 Total: -6.08 kcal Atomic # 8 Polarization: -8.42 SS G_CDS: -1.78 Total: -10.21 kcal Atomic # 14 Polarization: 2.49 SS G_CDS: 2.20 Total: 4.69 kcal Atomic # 16 Polarization: 0.34 SS G_CDS: -1.23 Total: -0.88 kcal Total: -19.33 -2.12 -21.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_13941096_15704122.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.004 kcal (2) G-P(sol) polarization free energy of solvation -19.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds