Wall clock time and date at job start Mon Mar 8 2021 04:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34226 * 116.99941 * 2 1 4 4 O 1.20829 * 119.99736 * 359.97438 * 3 2 1 5 5 C 1.50695 * 120.00366 * 179.97438 * 3 2 1 6 6 N 1.46500 * 112.84963 * 35.88035 * 5 3 2 7 7 C 1.34778 * 119.99615 * 74.50238 * 6 5 3 8 8 O 1.21511 * 120.00441 * 354.76158 * 7 6 5 9 9 O 1.34637 * 119.99852 * 175.03203 * 7 6 5 10 10 C 1.45205 * 117.00163 * 179.72719 * 9 7 6 11 11 C 1.52995 * 109.47150 * 60.00052 * 10 9 7 12 12 C 1.53003 * 109.46969 * 180.02562 * 10 9 7 13 13 C 1.53001 * 109.46772 * 299.99674 * 10 9 7 14 14 C 1.53781 * 113.69062 * 264.61389 * 5 3 2 15 15 C 1.53786 * 87.08320 * 220.00325 * 14 5 3 16 16 H 1.08993 * 113.69418 * 270.87424 * 15 14 5 17 17 N 1.46497 * 113.61067 * 139.97753 * 15 14 5 18 18 C 1.38406 * 119.99883 * 107.50812 * 17 15 14 19 19 N 1.32499 * 119.21678 * 359.72729 * 18 17 15 20 20 C 1.32276 * 120.74192 * 179.71757 * 19 18 17 21 21 C 1.38604 * 119.19590 * 0.54513 * 20 19 18 22 22 C 1.50702 * 120.72153 * 179.70820 * 21 20 19 23 23 O 1.42897 * 109.47243 * 245.02448 * 22 21 20 24 24 Si 1.86298 * 109.46950 * 5.02249 * 22 21 20 25 25 C 1.38604 * 118.55868 * 359.72996 * 21 20 19 26 26 N 1.32272 * 119.19656 * 0.02562 * 25 21 20 27 27 C 1.53778 * 113.61820 * 167.07855 * 5 3 2 28 28 H 1.09004 * 109.46728 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.47545 * 300.00304 * 1 2 3 30 30 H 1.09002 * 109.46839 * 60.00688 * 1 2 3 31 31 H 0.96995 * 120.00532 * 254.50266 * 6 5 3 32 32 H 1.09000 * 109.47491 * 60.00018 * 11 10 9 33 33 H 1.08996 * 109.46926 * 180.02562 * 11 10 9 34 34 H 1.09001 * 109.46847 * 300.00080 * 11 10 9 35 35 H 1.08994 * 109.47146 * 59.99927 * 12 10 9 36 36 H 1.09001 * 109.46955 * 180.02562 * 12 10 9 37 37 H 1.09000 * 109.46845 * 299.99476 * 12 10 9 38 38 H 1.09001 * 109.46801 * 60.00505 * 13 10 9 39 39 H 1.09001 * 109.46568 * 179.97438 * 13 10 9 40 40 H 1.08994 * 109.47717 * 300.00302 * 13 10 9 41 41 H 1.09001 * 113.61691 * 334.55806 * 14 5 3 42 42 H 1.09001 * 113.61219 * 105.45769 * 14 5 3 43 43 H 0.96997 * 120.00575 * 287.50369 * 17 15 14 44 44 H 1.08003 * 120.40079 * 180.25597 * 20 19 18 45 45 H 1.08994 * 109.47034 * 125.02314 * 22 21 20 46 46 H 0.96702 * 113.99994 * 59.99649 * 23 22 21 47 47 H 1.48505 * 109.99870 * 58.68489 * 24 22 21 48 48 H 1.48500 * 110.00026 * 179.97438 * 24 22 21 49 49 H 1.08001 * 120.40359 * 180.02562 * 25 21 20 50 50 H 1.09001 * 113.61608 * 254.61619 * 27 5 3 51 51 H 1.09003 * 113.61545 * 25.43455 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5662 1.2750 0.0006 6 7 4.1920 0.2123 -0.7902 7 6 4.1637 0.2686 -2.1365 8 8 3.5386 1.1483 -2.6949 9 8 4.8237 -0.6532 -2.8628 10 6 4.7444 -0.5344 -4.3078 11 6 5.3169 0.8168 -4.7405 12 6 5.5498 -1.6616 -4.9572 13 6 3.2825 -0.6336 -4.7482 14 6 4.1758 1.4396 1.4028 15 6 5.1717 2.4249 0.7683 16 1 6.0766 1.9499 0.3896 17 7 5.4504 3.5963 1.6028 18 6 6.6737 3.7176 2.2387 19 7 7.5793 2.7625 2.0864 20 6 8.7603 2.8503 2.6758 21 6 9.0400 3.9522 3.4687 22 6 10.3718 4.0841 4.1615 23 8 10.1794 4.0359 5.5766 24 14 11.4852 2.6851 3.6381 25 6 8.0680 4.9300 3.6109 26 7 6.9093 4.7832 2.9900 27 6 4.1096 2.6786 -0.3146 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 4.6266 -0.5318 -0.3449 32 1 6.3583 0.8876 -4.4268 33 1 5.2569 0.9062 -5.8252 34 1 4.7427 1.6196 -4.2779 35 1 5.1415 -2.6240 -4.6488 36 1 5.4906 -1.5721 -6.0419 37 1 6.5913 -1.5913 -4.6435 38 1 2.7084 0.1692 -4.2855 39 1 3.2230 -0.5440 -5.8328 40 1 2.8746 -1.5962 -4.4398 41 1 3.4998 1.9037 2.1210 42 1 4.6430 0.5321 1.7851 43 1 4.7777 4.2869 1.7096 44 1 9.4959 2.0705 2.5446 45 1 10.8303 5.0347 3.8893 46 1 9.7743 3.2159 5.8908 47 1 11.6675 2.7052 2.1645 48 1 12.8021 2.8040 4.3140 49 1 8.2544 5.8013 4.2213 50 1 4.5234 2.7713 -1.3187 51 1 3.4150 3.4814 -0.0672 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_13976898_12175864.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:44:30 Heat of formation + Delta-G solvation = -93.184491 kcal Electronic energy + Delta-G solvation = -36561.300939 eV Core-core repulsion = 31657.904419 eV Total energy + Delta-G solvation = -4903.396520 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 381.182 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -42.76024 -42.05577 -41.53732 -40.23051 -38.24477 -37.91211 -37.55544 -36.13625 -35.24313 -34.73886 -33.84190 -31.94612 -29.37590 -28.39358 -28.31211 -27.38224 -27.16409 -26.19190 -25.72077 -24.00242 -23.37280 -22.38421 -21.22484 -20.73083 -19.50629 -19.39006 -19.31636 -18.60702 -18.10606 -17.94471 -17.54732 -17.40849 -17.10904 -16.68410 -16.54832 -16.10245 -16.00834 -15.75775 -15.70640 -15.49388 -15.35377 -14.89349 -14.57693 -14.55552 -14.46145 -14.06794 -13.88374 -13.66955 -13.63056 -13.34821 -13.21324 -13.15516 -13.08938 -12.94122 -12.88069 -12.65778 -12.55116 -12.36317 -12.25328 -12.22555 -11.92940 -11.89955 -11.82161 -11.76525 -11.43319 -11.35348 -11.14664 -10.54296 -10.51442 -10.03760 -9.16680 -4.97346 0.04184 0.13614 0.69862 1.04725 1.34188 1.36060 1.65516 1.67514 1.89863 2.02712 2.74759 2.86147 2.97219 3.03604 3.15324 3.45032 3.54190 3.59631 3.68440 3.71221 3.72613 3.77451 3.80666 3.92091 4.00201 4.18220 4.21682 4.25160 4.33195 4.43714 4.49489 4.55809 4.58805 4.59204 4.60781 4.70293 4.74203 4.74540 4.75341 4.80977 4.85291 4.86983 5.00584 5.16360 5.19104 5.25016 5.27749 5.30159 5.49646 5.72445 5.97803 6.20730 6.34936 6.49537 6.81887 7.19791 7.23552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.355 6.355 3 C 0.468 3.532 4 O -0.523 6.523 5 C 0.178 3.822 6 N -0.671 5.671 7 C 0.652 3.348 8 O -0.583 6.583 9 O -0.359 6.359 10 C 0.130 3.870 11 C -0.181 4.181 12 C -0.138 4.138 13 C -0.181 4.181 14 C -0.122 4.122 15 C 0.158 3.842 16 H 0.131 0.869 17 N -0.681 5.681 18 C 0.555 3.445 19 N -0.570 5.570 20 C 0.197 3.803 21 C -0.285 4.285 22 C -0.049 4.049 23 O -0.555 6.555 24 Si 0.772 3.228 25 C 0.211 3.789 26 N -0.590 5.590 27 C -0.129 4.129 28 H 0.131 0.869 29 H 0.068 0.932 30 H 0.052 0.948 31 H 0.430 0.570 32 H 0.065 0.935 33 H 0.085 0.915 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.097 0.903 37 H 0.072 0.928 38 H 0.060 0.940 39 H 0.086 0.914 40 H 0.063 0.937 41 H 0.114 0.886 42 H 0.125 0.875 43 H 0.419 0.581 44 H 0.193 0.807 45 H 0.112 0.888 46 H 0.395 0.605 47 H -0.283 1.283 48 H -0.299 1.299 49 H 0.180 0.820 50 H 0.084 0.916 51 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.540 -7.141 1.602 7.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.271 6.271 3 C 0.310 3.690 4 O -0.411 6.411 5 C 0.089 3.911 6 N -0.334 5.334 7 C 0.406 3.594 8 O -0.473 6.473 9 O -0.274 6.274 10 C 0.093 3.907 11 C -0.238 4.238 12 C -0.195 4.195 13 C -0.238 4.238 14 C -0.161 4.161 15 C 0.052 3.948 16 H 0.149 0.851 17 N -0.317 5.317 18 C 0.198 3.802 19 N -0.292 5.292 20 C 0.030 3.970 21 C -0.293 4.293 22 C -0.160 4.160 23 O -0.363 6.363 24 Si 0.678 3.322 25 C 0.044 3.956 26 N -0.312 5.312 27 C -0.168 4.168 28 H 0.149 0.851 29 H 0.087 0.913 30 H 0.071 0.929 31 H 0.270 0.730 32 H 0.084 0.916 33 H 0.104 0.896 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.115 0.885 37 H 0.091 0.909 38 H 0.079 0.921 39 H 0.105 0.895 40 H 0.082 0.918 41 H 0.132 0.868 42 H 0.144 0.856 43 H 0.258 0.742 44 H 0.209 0.791 45 H 0.129 0.871 46 H 0.245 0.755 47 H -0.210 1.210 48 H -0.226 1.226 49 H 0.197 0.803 50 H 0.103 0.897 51 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 2.088 -6.346 0.233 6.685 hybrid contribution -0.129 1.131 0.267 1.169 sum 1.959 -5.215 0.500 5.593 Atomic orbital electron populations 1.23548 0.74930 1.05713 1.02394 1.86512 1.24782 1.32593 1.83176 1.24069 0.92037 0.81577 0.71358 1.90680 1.66961 1.37325 1.46100 1.20740 0.83633 0.90099 0.96645 1.44006 1.60209 1.27130 1.02083 1.18210 0.77843 0.80344 0.83008 1.90962 1.46604 1.38629 1.71067 1.86325 1.67930 1.50827 1.22280 1.22369 0.96950 0.97825 0.73512 1.22486 1.01435 0.96566 1.03354 1.21894 1.00066 0.96335 1.01159 1.22475 0.95215 1.02782 1.03315 1.23888 0.97937 1.02751 0.91503 1.22338 0.97624 0.85500 0.89354 0.85128 1.44106 1.12279 1.25050 1.50237 1.19585 0.87536 0.85668 0.87414 1.67930 1.03630 1.29688 1.27956 1.23213 0.91803 0.94918 0.87064 1.21787 1.00917 0.99518 1.07106 1.24828 0.96986 1.10414 0.83820 1.86487 1.84932 1.45583 1.19251 0.94004 0.77378 0.83604 0.77253 1.23128 0.85616 0.96995 0.89847 1.67983 1.24700 1.24268 1.14243 1.23698 0.97934 0.94130 1.01048 0.85132 0.91283 0.92877 0.72973 0.91636 0.89639 0.91765 0.91001 0.88451 0.90902 0.92108 0.89544 0.91803 0.86784 0.85648 0.74181 0.79104 0.87075 0.75490 1.20993 1.22643 0.80319 0.89746 0.87276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.02 10.56 113.37 1.20 1.21 16 2 O -0.36 -1.62 10.42 -51.38 -0.54 -2.16 16 3 C 0.47 3.00 6.88 71.23 0.49 3.49 16 4 O -0.52 -6.31 15.66 21.96 0.34 -5.97 16 5 C 0.18 0.07 1.01 3.38 0.00 0.07 16 6 N -0.67 0.61 4.99 -551.34 -2.75 -2.14 16 7 C 0.65 3.25 7.55 129.79 0.98 4.23 16 8 O -0.58 -6.27 10.31 19.81 0.20 -6.07 16 9 O -0.36 -1.21 9.94 -55.46 -0.55 -1.77 16 10 C 0.13 0.21 1.13 -10.79 -0.01 0.20 16 11 C -0.18 -0.39 8.37 71.98 0.60 0.21 16 12 C -0.14 0.47 8.85 71.98 0.64 1.11 16 13 C -0.18 -0.49 8.37 71.98 0.60 0.11 16 14 C -0.12 0.61 7.18 31.12 0.22 0.84 16 15 C 0.16 -0.37 4.16 45.52 0.19 -0.18 16 16 H 0.13 -0.26 7.37 -2.39 -0.02 -0.27 16 17 N -0.68 -0.03 5.50 -327.93 -1.80 -1.84 16 18 C 0.55 1.85 8.43 261.48 2.20 4.06 16 19 N -0.57 -0.78 9.13 -197.98 -1.81 -2.59 16 20 C 0.20 -0.49 9.92 84.71 0.84 0.35 16 21 C -0.29 0.62 5.36 -19.69 -0.11 0.51 16 22 C -0.05 0.20 2.83 71.24 0.20 0.40 16 23 O -0.55 1.80 12.85 -148.98 -1.91 -0.11 16 24 Si 0.77 -4.36 29.88 68.60 2.05 -2.31 16 25 C 0.21 0.23 10.99 84.71 0.93 1.16 16 26 N -0.59 -2.78 10.46 -197.98 -2.07 -4.85 16 27 C -0.13 -0.20 6.48 31.12 0.20 0.01 16 28 H 0.13 -0.69 8.14 -2.38 -0.02 -0.71 16 29 H 0.07 0.00 8.13 -2.39 -0.02 -0.02 16 30 H 0.05 0.16 8.13 -2.39 -0.02 0.14 16 31 H 0.43 -2.88 8.85 -92.71 -0.82 -3.70 16 32 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 33 H 0.08 -0.06 8.14 -2.39 -0.02 -0.08 16 34 H 0.06 0.48 5.88 -2.39 -0.01 0.46 16 35 H 0.07 -0.27 8.14 -2.39 -0.02 -0.29 16 36 H 0.10 -0.61 8.14 -2.39 -0.02 -0.63 16 37 H 0.07 -0.28 8.14 -2.39 -0.02 -0.30 16 38 H 0.06 0.52 5.88 -2.39 -0.01 0.50 16 39 H 0.09 -0.04 8.14 -2.39 -0.02 -0.06 16 40 H 0.06 0.12 8.14 -2.39 -0.02 0.11 16 41 H 0.11 -0.55 8.10 -2.39 -0.02 -0.57 16 42 H 0.13 -1.21 8.12 -2.39 -0.02 -1.23 16 43 H 0.42 -0.32 8.84 -92.71 -0.82 -1.14 16 44 H 0.19 -1.66 5.07 -2.91 -0.01 -1.67 16 45 H 0.11 -0.36 7.96 -2.39 -0.02 -0.38 16 46 H 0.40 -4.36 8.70 -74.06 -0.64 -5.00 16 47 H -0.28 0.23 7.11 99.48 0.71 0.94 16 48 H -0.30 -0.75 7.11 99.48 0.71 -0.04 16 49 H 0.18 -0.36 8.06 -2.91 -0.02 -0.38 16 50 H 0.08 0.43 6.80 -2.39 -0.02 0.41 16 51 H 0.11 0.34 7.32 -2.39 -0.02 0.32 16 Total: 0.00 -24.66 419.78 -0.89 -25.56 By element: Atomic # 1 Polarization: -12.31 SS G_CDS: -1.24 Total: -13.55 kcal Atomic # 6 Polarization: 8.60 SS G_CDS: 9.19 Total: 17.79 kcal Atomic # 7 Polarization: -2.98 SS G_CDS: -8.44 Total: -11.42 kcal Atomic # 8 Polarization: -13.62 SS G_CDS: -2.45 Total: -16.07 kcal Atomic # 14 Polarization: -4.36 SS G_CDS: 2.05 Total: -2.31 kcal Total: -24.66 -0.89 -25.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_13976898_12175864.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.628 kcal (2) G-P(sol) polarization free energy of solvation -24.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds