Wall clock time and date at job start Mon Mar 8 2021 04:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34228 * 116.99866 * 2 1 4 4 O 1.20826 * 120.00369 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99917 * 180.02562 * 3 2 1 6 6 N 1.46503 * 112.84920 * 35.51306 * 5 3 2 7 7 C 1.34771 * 120.00080 * 67.00130 * 6 5 3 8 8 O 1.21511 * 119.99795 * 354.94563 * 7 6 5 9 9 O 1.34639 * 120.00039 * 174.94839 * 7 6 5 10 10 C 1.45205 * 116.99799 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.47150 * 60.00016 * 10 9 7 12 12 C 1.52994 * 109.47285 * 299.99721 * 10 9 7 13 13 C 1.53006 * 109.46769 * 179.97438 * 10 9 7 14 14 C 1.53784 * 113.69158 * 264.24586 * 5 3 2 15 15 C 1.53776 * 87.08134 * 220.01016 * 14 5 3 16 16 H 1.09006 * 113.61368 * 270.88007 * 15 14 5 17 17 N 1.46502 * 113.69399 * 139.99403 * 15 14 5 18 18 C 1.39001 * 120.00175 * 107.45759 * 17 15 14 19 19 N 1.32398 * 119.70407 * 179.97438 * 18 17 15 20 20 C 1.31973 * 121.62039 * 180.02562 * 19 18 17 21 21 C 1.38021 * 120.85480 * 359.97438 * 20 19 18 22 22 C 1.50707 * 120.33162 * 180.02562 * 21 20 19 23 23 O 1.42898 * 109.47201 * 119.99800 * 22 21 20 24 24 Si 1.86302 * 109.47093 * 359.97438 * 22 21 20 25 25 C 1.38878 * 119.33289 * 0.02562 * 21 20 19 26 26 C 1.38300 * 118.50555 * 359.73243 * 25 21 20 27 27 C 1.53780 * 113.61466 * 166.70810 * 5 3 2 28 28 H 1.09001 * 109.47286 * 59.99927 * 1 2 3 29 29 H 1.09002 * 109.47089 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46913 * 299.99791 * 1 2 3 31 31 H 0.97000 * 119.99978 * 246.99584 * 6 5 3 32 32 H 1.08998 * 109.47237 * 300.00031 * 11 10 9 33 33 H 1.08999 * 109.46995 * 179.97438 * 11 10 9 34 34 H 1.09000 * 109.47185 * 59.99797 * 11 10 9 35 35 H 1.08999 * 109.47305 * 180.02562 * 12 10 9 36 36 H 1.09000 * 109.47399 * 300.00191 * 12 10 9 37 37 H 1.09008 * 109.46723 * 60.00138 * 12 10 9 38 38 H 1.09000 * 109.47122 * 299.99932 * 13 10 9 39 39 H 1.09001 * 109.47234 * 59.99679 * 13 10 9 40 40 H 1.09003 * 109.46784 * 180.02562 * 13 10 9 41 41 H 1.09004 * 113.61150 * 334.55765 * 14 5 3 42 42 H 1.08998 * 113.61655 * 105.45705 * 14 5 3 43 43 H 0.97000 * 119.99284 * 287.46019 * 17 15 14 44 44 H 1.07995 * 119.56802 * 179.97438 * 20 19 18 45 45 H 1.09000 * 109.46797 * 240.00455 * 22 21 20 46 46 H 0.96695 * 114.00125 * 300.00091 * 23 22 21 47 47 H 1.48509 * 109.99898 * 58.68315 * 24 22 21 48 48 H 1.48498 * 109.99960 * 180.02562 * 24 22 21 49 49 H 1.07999 * 120.74833 * 180.02562 * 25 21 20 50 50 H 1.07998 * 120.45242 * 180.28472 * 26 25 21 51 51 H 1.08996 * 113.61491 * 254.61100 * 27 5 3 52 52 H 1.09000 * 113.61141 * 25.43444 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2749 -0.0006 6 7 4.1916 0.2074 -0.7853 7 6 4.0341 0.1739 -2.1233 8 8 3.2997 0.9736 -2.6688 9 8 4.6904 -0.7458 -2.8556 10 6 4.4725 -0.7233 -4.2911 11 6 4.9048 0.6332 -4.8514 12 6 2.9879 -0.9469 -4.5851 13 6 5.2960 -1.8322 -4.9493 14 6 4.1766 1.4479 1.4003 15 6 5.1720 2.4294 0.7595 16 1 6.0763 1.9508 0.3835 17 7 5.4528 3.6063 1.5855 18 6 6.6819 3.7313 2.2224 19 7 6.9295 4.7977 2.9671 20 6 8.0833 4.9552 3.5881 21 6 9.0795 4.0057 3.4824 22 6 10.3924 4.1973 4.1971 23 8 10.5994 3.1180 5.1105 24 14 10.3602 5.8071 5.1343 25 6 8.8598 2.8721 2.7108 26 6 7.6391 2.7322 2.0759 27 6 4.1096 2.6766 -0.3245 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 4.7191 -0.4752 -0.3418 32 1 4.3185 1.4235 -4.3825 33 1 4.7416 0.6499 -5.9290 34 1 5.9625 0.7925 -4.6419 35 1 2.8244 -0.9305 -5.6627 36 1 2.6799 -1.9134 -4.1860 37 1 2.4016 -0.1566 -4.1162 38 1 6.3537 -1.6725 -4.7398 39 1 4.9886 -2.7988 -4.5501 40 1 5.1328 -1.8151 -6.0269 41 1 3.5009 1.9164 2.1161 42 1 4.6439 0.5427 1.7879 43 1 4.7808 4.2984 1.6878 44 1 8.2501 5.8384 4.1868 45 1 11.2030 4.2175 3.4687 46 1 9.9144 3.0394 5.7883 47 1 9.2394 5.8053 6.1086 48 1 11.6495 6.0081 5.8430 49 1 9.6232 2.1146 2.6125 50 1 7.4330 1.8610 1.4718 51 1 4.5230 2.7632 -1.3293 52 1 3.4151 3.4808 -0.0816 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_13976898_13915762.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:44:34 Heat of formation + Delta-G solvation = -109.818153 kcal Electronic energy + Delta-G solvation = -36361.142357 eV Core-core repulsion = 31522.450458 eV Total energy + Delta-G solvation = -4838.691899 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 380.187 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -42.74162 -41.57050 -41.34931 -40.17785 -38.26111 -37.92968 -37.55202 -36.05327 -35.20196 -33.82545 -33.26029 -31.19102 -29.35245 -28.38937 -28.30726 -27.28812 -27.14257 -25.90105 -24.83421 -24.02038 -23.10489 -22.00163 -21.23049 -20.63527 -19.44852 -19.25882 -18.79311 -18.50172 -18.18372 -17.58652 -17.47917 -17.30095 -17.02790 -16.63868 -16.44634 -16.27555 -15.91327 -15.74141 -15.41965 -15.34276 -15.27645 -14.72518 -14.54242 -14.46968 -14.34184 -13.97753 -13.84106 -13.69131 -13.64072 -13.35624 -13.28082 -13.17452 -13.11656 -12.94055 -12.88090 -12.65947 -12.55950 -12.43734 -12.31700 -12.23094 -12.02302 -11.93882 -11.77899 -11.42594 -11.22062 -11.15141 -10.77157 -10.53594 -10.51589 -10.37286 -8.73187 -4.89602 0.24122 0.43140 0.70549 1.04443 1.35739 1.39051 1.61791 1.70577 1.97978 2.12353 2.79926 2.85867 2.98699 3.04833 3.40240 3.47203 3.58161 3.61906 3.71607 3.77761 3.80563 3.90610 3.92902 4.01871 4.12626 4.16341 4.19562 4.32247 4.38417 4.44592 4.47924 4.54691 4.58511 4.59790 4.63731 4.71023 4.73669 4.75724 4.78651 4.79700 4.85282 4.87267 4.99608 5.05737 5.17246 5.19792 5.25434 5.30250 5.34155 5.49537 5.54033 5.99344 6.20550 6.48505 6.50577 6.53263 7.14918 7.20088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.356 6.356 3 C 0.469 3.531 4 O -0.525 6.525 5 C 0.177 3.823 6 N -0.671 5.671 7 C 0.652 3.348 8 O -0.583 6.583 9 O -0.359 6.359 10 C 0.130 3.870 11 C -0.181 4.181 12 C -0.181 4.181 13 C -0.138 4.138 14 C -0.127 4.127 15 C 0.151 3.849 16 H 0.139 0.861 17 N -0.708 5.708 18 C 0.395 3.605 19 N -0.565 5.565 20 C 0.144 3.856 21 C -0.232 4.232 22 C -0.060 4.060 23 O -0.548 6.548 24 Si 0.750 3.250 25 C -0.010 4.010 26 C -0.237 4.237 27 C -0.128 4.128 28 H 0.052 0.948 29 H 0.129 0.871 30 H 0.068 0.932 31 H 0.431 0.569 32 H 0.063 0.937 33 H 0.084 0.916 34 H 0.066 0.934 35 H 0.085 0.915 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.097 0.903 41 H 0.111 0.889 42 H 0.129 0.871 43 H 0.408 0.592 44 H 0.164 0.836 45 H 0.127 0.873 46 H 0.385 0.615 47 H -0.285 1.285 48 H -0.302 1.302 49 H 0.149 0.851 50 H 0.157 0.843 51 H 0.085 0.915 52 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.453 -4.777 -1.387 5.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.272 6.272 3 C 0.310 3.690 4 O -0.413 6.413 5 C 0.087 3.913 6 N -0.334 5.334 7 C 0.406 3.594 8 O -0.473 6.473 9 O -0.273 6.273 10 C 0.094 3.906 11 C -0.238 4.238 12 C -0.238 4.238 13 C -0.195 4.195 14 C -0.166 4.166 15 C 0.045 3.955 16 H 0.156 0.844 17 N -0.339 5.339 18 C 0.160 3.840 19 N -0.282 5.282 20 C -0.012 4.012 21 C -0.237 4.237 22 C -0.170 4.170 23 O -0.356 6.356 24 Si 0.656 3.344 25 C -0.036 4.036 26 C -0.261 4.261 27 C -0.168 4.168 28 H 0.071 0.929 29 H 0.148 0.852 30 H 0.086 0.914 31 H 0.271 0.729 32 H 0.082 0.918 33 H 0.103 0.897 34 H 0.085 0.915 35 H 0.104 0.896 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.092 0.908 39 H 0.089 0.911 40 H 0.115 0.885 41 H 0.129 0.871 42 H 0.147 0.853 43 H 0.245 0.755 44 H 0.181 0.819 45 H 0.145 0.855 46 H 0.234 0.766 47 H -0.212 1.212 48 H -0.230 1.230 49 H 0.167 0.833 50 H 0.175 0.825 51 H 0.103 0.897 52 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 1.798 -3.371 -1.381 4.063 hybrid contribution -0.590 -1.213 0.662 1.503 sum 1.208 -4.584 -0.718 4.795 Atomic orbital electron populations 1.23522 0.75039 1.05607 1.02321 1.86505 1.24703 1.32762 1.83233 1.24068 0.92165 0.81496 0.71231 1.90678 1.67043 1.37339 1.46209 1.20805 0.83622 0.89995 0.96845 1.44014 1.55724 1.30858 1.02823 1.18218 0.78546 0.79698 0.82974 1.90972 1.41409 1.43392 1.71521 1.86322 1.65335 1.52925 1.22763 1.22363 0.96587 0.97846 0.73819 1.22482 1.02133 0.96430 1.02747 1.22473 0.95045 1.02530 1.03739 1.21896 1.00034 0.96468 1.01072 1.23963 0.98325 1.02851 0.91446 1.22433 0.97687 0.85797 0.89627 0.84398 1.44450 1.13655 1.24199 1.51580 1.18635 0.86891 0.89604 0.88892 1.67133 1.23761 1.23954 1.13391 1.22426 0.87091 0.97491 0.94236 1.20977 0.98541 0.98527 1.05657 1.24832 0.96659 0.99727 0.95785 1.86563 1.53157 1.50819 1.45013 0.94275 0.76388 0.80713 0.82994 1.21420 0.96042 0.95697 0.90442 1.21710 0.94653 1.01994 1.07748 1.23682 0.97980 0.94027 1.01062 0.92945 0.85249 0.91351 0.72906 0.91780 0.89711 0.91472 0.89596 0.91866 0.92127 0.90828 0.91085 0.88486 0.87066 0.85287 0.75540 0.81897 0.85546 0.76611 1.21219 1.22967 0.83322 0.82505 0.89660 0.87632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.03 10.56 113.37 1.20 1.23 16 2 O -0.36 -1.69 10.41 -51.40 -0.54 -2.22 16 3 C 0.47 2.84 6.42 71.24 0.46 3.30 16 4 O -0.52 -6.32 15.66 21.96 0.34 -5.98 16 5 C 0.18 -0.24 1.00 3.38 0.00 -0.23 16 6 N -0.67 2.02 5.02 -551.33 -2.77 -0.74 16 7 C 0.65 2.28 7.53 129.79 0.98 3.26 16 8 O -0.58 -5.70 10.60 19.81 0.21 -5.49 16 9 O -0.36 -0.72 9.94 -55.48 -0.55 -1.27 16 10 C 0.13 0.08 1.13 -10.79 -0.01 0.07 16 11 C -0.18 -0.19 8.37 71.98 0.60 0.41 16 12 C -0.18 -0.36 8.37 71.98 0.60 0.24 16 13 C -0.14 0.58 8.85 71.98 0.64 1.22 16 14 C -0.13 0.94 7.17 31.12 0.22 1.16 16 15 C 0.15 -0.94 3.93 45.52 0.18 -0.76 16 16 H 0.14 -1.33 6.11 -2.38 -0.01 -1.35 16 17 N -0.71 1.76 5.53 -322.04 -1.78 -0.02 16 18 C 0.40 0.31 7.65 133.06 1.02 1.33 16 19 N -0.57 -2.40 10.39 -193.27 -2.01 -4.41 16 20 C 0.14 0.18 9.84 84.62 0.83 1.01 16 21 C -0.23 0.19 5.40 -19.76 -0.11 0.09 16 22 C -0.06 0.12 2.84 71.24 0.20 0.32 16 23 O -0.55 -0.43 12.78 -148.98 -1.90 -2.33 16 24 Si 0.75 -1.46 29.82 68.60 2.05 0.58 16 25 C -0.01 0.02 9.77 22.44 0.22 0.24 16 26 C -0.24 0.65 9.28 22.50 0.21 0.86 16 27 C -0.13 0.11 6.59 31.12 0.21 0.32 16 28 H 0.05 0.19 8.13 -2.39 -0.02 0.17 16 29 H 0.13 -0.62 8.14 -2.39 -0.02 -0.64 16 30 H 0.07 0.03 8.13 -2.39 -0.02 0.01 16 31 H 0.43 -4.04 8.78 -92.71 -0.81 -4.86 16 32 H 0.06 0.41 5.88 -2.39 -0.01 0.40 16 33 H 0.08 -0.14 8.14 -2.39 -0.02 -0.15 16 34 H 0.07 -0.02 8.14 -2.39 -0.02 -0.04 16 35 H 0.09 -0.09 8.14 -2.39 -0.02 -0.11 16 36 H 0.06 0.09 8.14 -2.39 -0.02 0.07 16 37 H 0.06 0.48 5.88 -2.38 -0.01 0.46 16 38 H 0.07 -0.36 8.14 -2.39 -0.02 -0.38 16 39 H 0.07 -0.31 8.14 -2.39 -0.02 -0.33 16 40 H 0.10 -0.67 8.14 -2.39 -0.02 -0.69 16 41 H 0.11 -0.65 8.10 -2.38 -0.02 -0.67 16 42 H 0.13 -1.67 8.09 -2.39 -0.02 -1.69 16 43 H 0.41 -0.65 8.85 -92.71 -0.82 -1.47 16 44 H 0.16 -0.34 4.88 -2.91 -0.01 -0.35 16 45 H 0.13 -0.49 7.96 -2.39 -0.02 -0.51 16 46 H 0.38 -1.62 8.70 -74.06 -0.64 -2.26 16 47 H -0.29 -0.70 7.11 99.48 0.71 0.01 16 48 H -0.30 -1.73 7.11 99.48 0.71 -1.03 16 49 H 0.15 -0.71 8.06 -2.91 -0.02 -0.73 16 50 H 0.16 -1.31 6.04 -2.91 -0.02 -1.33 16 51 H 0.08 0.15 7.41 -2.39 -0.02 0.13 16 52 H 0.11 0.20 7.32 -2.39 -0.02 0.18 16 Total: 0.00 -24.24 422.54 -0.75 -24.99 By element: Atomic # 1 Polarization: -15.91 SS G_CDS: -1.25 Total: -17.16 kcal Atomic # 6 Polarization: 6.61 SS G_CDS: 7.45 Total: 14.05 kcal Atomic # 7 Polarization: 1.38 SS G_CDS: -6.56 Total: -5.17 kcal Atomic # 8 Polarization: -14.86 SS G_CDS: -2.44 Total: -17.29 kcal Atomic # 14 Polarization: -1.46 SS G_CDS: 2.05 Total: 0.58 kcal Total: -24.24 -0.75 -24.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_13976898_13915762.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.826 kcal (2) G-P(sol) polarization free energy of solvation -24.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds