Wall clock time and date at job start Mon Mar 8 2021 04:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45209 * 1 3 3 C 1.34223 * 116.99874 * 2 1 4 4 O 1.20830 * 120.00357 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99987 * 179.97438 * 3 2 1 6 6 N 1.46504 * 112.84879 * 24.44556 * 5 3 2 7 7 C 1.34777 * 119.99950 * 65.89152 * 6 5 3 8 8 O 1.21506 * 120.00027 * 5.01718 * 7 6 5 9 9 O 1.34634 * 119.99807 * 185.01358 * 7 6 5 10 10 C 1.45200 * 116.99655 * 180.02562 * 9 7 6 11 11 C 1.53003 * 109.47029 * 60.00535 * 10 9 7 12 12 C 1.53008 * 109.46783 * 179.97438 * 10 9 7 13 13 C 1.52996 * 109.47408 * 300.00112 * 10 9 7 14 14 C 1.53784 * 113.69110 * 253.17869 * 5 3 2 15 15 C 1.53778 * 87.08046 * 220.00446 * 14 5 3 16 16 H 1.08995 * 113.61631 * 270.87997 * 15 14 5 17 17 N 1.46503 * 113.61196 * 139.97711 * 15 14 5 18 18 C 1.38609 * 119.99763 * 107.50437 * 17 15 14 19 19 N 1.29689 * 124.94962 * 0.02700 * 18 17 15 20 20 C 1.32122 * 116.86907 * 179.97438 * 19 18 17 21 21 C 1.33328 * 114.57866 * 0.02562 * 20 19 18 22 22 C 1.50693 * 125.95215 * 180.02562 * 21 20 19 23 23 O 1.42905 * 109.47266 * 299.99467 * 22 21 20 24 24 Si 1.86304 * 109.47310 * 179.97438 * 22 21 20 25 25 S 1.70969 * 124.95183 * 179.71839 * 18 17 15 26 26 C 1.53778 * 113.61605 * 155.64168 * 5 3 2 27 27 H 1.08997 * 109.47069 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47039 * 300.00396 * 1 2 3 29 29 H 1.09001 * 109.46841 * 60.00307 * 1 2 3 30 30 H 0.96995 * 119.99909 * 245.89474 * 6 5 3 31 31 H 1.08987 * 109.47343 * 59.99622 * 11 10 9 32 32 H 1.08997 * 109.46966 * 180.02562 * 11 10 9 33 33 H 1.08998 * 109.46516 * 299.99246 * 11 10 9 34 34 H 1.09000 * 109.46889 * 60.00019 * 12 10 9 35 35 H 1.08997 * 109.46773 * 179.97438 * 12 10 9 36 36 H 1.09001 * 109.47184 * 300.00166 * 12 10 9 37 37 H 1.08997 * 109.47139 * 59.99555 * 13 10 9 38 38 H 1.09002 * 109.47234 * 180.02562 * 13 10 9 39 39 H 1.09002 * 109.46737 * 299.99873 * 13 10 9 40 40 H 1.08994 * 113.61349 * 105.45693 * 14 5 3 41 41 H 1.08996 * 113.61098 * 334.55312 * 14 5 3 42 42 H 0.96998 * 120.00660 * 287.50330 * 17 15 14 43 43 H 1.08003 * 122.71304 * 179.97438 * 20 19 18 44 44 H 1.08997 * 109.47487 * 59.99927 * 22 21 20 45 45 H 0.96701 * 113.99685 * 179.97438 * 23 22 21 46 46 H 1.48496 * 110.00058 * 298.68383 * 24 22 21 47 47 H 1.48505 * 109.99523 * 60.00007 * 24 22 21 48 48 H 1.08998 * 113.61387 * 25.51830 * 26 5 3 49 49 H 1.09000 * 113.69206 * 254.62229 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2749 0.0006 6 7 4.1990 0.0772 -0.5576 7 6 4.0375 -0.2250 -1.8611 8 8 3.4443 0.5419 -2.5935 9 8 4.5334 -1.3765 -2.3517 10 6 4.3224 -1.6361 -3.7646 11 6 4.9725 -0.5239 -4.5901 12 6 4.9520 -2.9803 -4.1357 13 6 2.8212 -1.6773 -4.0571 14 6 4.1616 1.7144 1.3487 15 6 5.1650 2.5554 0.5421 16 1 6.0727 2.0145 0.2749 17 7 5.4365 3.8692 1.1309 18 6 6.6551 4.1155 1.7438 19 7 7.6205 3.2561 1.8499 20 6 8.7161 3.6619 2.4667 21 6 8.6735 4.9215 2.9016 22 6 9.7756 5.6425 3.6339 23 8 10.0711 4.9517 4.8495 24 14 9.2290 7.3803 4.0238 25 16 7.1074 5.5989 2.4634 26 6 4.1146 2.5888 -0.5806 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 4.7342 -0.4984 0.0109 31 1 6.0419 -0.4945 -4.3817 32 1 4.8138 -0.7185 -5.6507 33 1 4.5244 0.4339 -4.3258 34 1 4.4893 -3.7729 -3.5477 35 1 4.7933 -3.1754 -5.1963 36 1 6.0215 -2.9505 -3.9275 37 1 2.3731 -0.7195 -3.7927 38 1 2.6629 -1.8726 -5.1177 39 1 2.3582 -2.4697 -3.4690 40 1 4.6237 0.9010 1.9079 41 1 3.4788 2.3110 1.9536 42 1 4.7636 4.5667 1.0919 43 1 9.5765 3.0245 2.6079 44 1 10.6675 5.6743 3.0081 45 1 10.7735 5.3606 5.3735 46 1 8.9495 8.1190 2.7663 47 1 8.0135 7.3511 4.8765 48 1 3.4190 3.4243 -0.5030 49 1 4.5391 2.4827 -1.5789 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_13976898_15704118.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:44:40 Heat of formation + Delta-G solvation = -99.880153 kcal Electronic energy + Delta-G solvation = -34696.827608 eV Core-core repulsion = 29947.718899 eV Total energy + Delta-G solvation = -4749.108708 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 386.144 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -42.64743 -41.41203 -40.78711 -40.02047 -38.09976 -37.78585 -37.36428 -36.01128 -35.12624 -33.61429 -31.35613 -29.32981 -28.33863 -28.30199 -27.43028 -27.18594 -26.26486 -24.52073 -23.93745 -22.75620 -21.16142 -20.79674 -20.71218 -19.53679 -19.25614 -18.93123 -18.49374 -18.06686 -17.58808 -17.40294 -17.30424 -16.96737 -16.67503 -16.31360 -15.87644 -15.77263 -15.60841 -15.40749 -15.29761 -14.84474 -14.63221 -14.50533 -14.39556 -14.27613 -13.80481 -13.69457 -13.67135 -13.40466 -13.16745 -13.09453 -12.87521 -12.84507 -12.83997 -12.63885 -12.48501 -12.42990 -12.31290 -12.19722 -12.06640 -11.79220 -11.71755 -11.32239 -11.28537 -11.01518 -10.66518 -10.44038 -10.34625 -10.16044 -8.80962 -5.22762 -0.08048 0.04767 0.63368 0.86089 1.08659 1.21517 1.47250 1.56836 1.84467 1.91791 1.99104 2.10729 2.86472 2.92895 3.04360 3.34494 3.41664 3.54486 3.67113 3.75683 3.81778 3.93759 3.95744 3.96559 4.14692 4.23862 4.26011 4.35048 4.39571 4.41310 4.55274 4.57223 4.61070 4.62354 4.69223 4.73554 4.74895 4.77493 4.86602 4.91990 4.98247 5.09098 5.15726 5.31585 5.35146 5.40606 5.51621 5.73755 5.95143 6.23826 6.56767 6.64233 6.94069 7.30467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.350 6.350 3 C 0.475 3.525 4 O -0.495 6.495 5 C 0.179 3.821 6 N -0.687 5.687 7 C 0.660 3.340 8 O -0.557 6.557 9 O -0.359 6.359 10 C 0.137 3.863 11 C -0.185 4.185 12 C -0.142 4.142 13 C -0.184 4.184 14 C -0.137 4.137 15 C 0.148 3.852 16 H 0.129 0.871 17 N -0.680 5.680 18 C 0.328 3.672 19 N -0.545 5.545 20 C 0.123 3.877 21 C -0.260 4.260 22 C -0.017 4.017 23 O -0.545 6.545 24 Si 0.667 3.333 25 S 0.075 5.925 26 C -0.129 4.129 27 H 0.103 0.897 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.416 0.584 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.087 0.913 34 H 0.068 0.932 35 H 0.082 0.918 36 H 0.068 0.932 37 H 0.086 0.914 38 H 0.072 0.928 39 H 0.061 0.939 40 H 0.100 0.900 41 H 0.113 0.887 42 H 0.418 0.582 43 H 0.179 0.821 44 H 0.082 0.918 45 H 0.383 0.617 46 H -0.242 1.242 47 H -0.239 1.239 48 H 0.115 0.885 49 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.434 -0.361 1.582 3.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.265 6.265 3 C 0.315 3.685 4 O -0.381 6.381 5 C 0.090 3.910 6 N -0.349 5.349 7 C 0.414 3.586 8 O -0.445 6.445 9 O -0.273 6.273 10 C 0.101 3.899 11 C -0.242 4.242 12 C -0.199 4.199 13 C -0.241 4.241 14 C -0.177 4.177 15 C 0.040 3.960 16 H 0.147 0.853 17 N -0.319 5.319 18 C -0.042 4.042 19 N -0.270 5.270 20 C -0.028 4.028 21 C -0.382 4.382 22 C -0.131 4.131 23 O -0.352 6.352 24 Si 0.567 3.433 25 S 0.324 5.676 26 C -0.169 4.169 27 H 0.122 0.878 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.253 0.747 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.105 0.895 34 H 0.087 0.913 35 H 0.101 0.899 36 H 0.087 0.913 37 H 0.105 0.895 38 H 0.091 0.909 39 H 0.080 0.920 40 H 0.118 0.882 41 H 0.131 0.869 42 H 0.256 0.744 43 H 0.196 0.804 44 H 0.100 0.900 45 H 0.231 0.769 46 H -0.166 1.166 47 H -0.162 1.162 48 H 0.133 0.867 49 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 1.193 0.734 0.676 1.555 hybrid contribution 0.268 -1.083 -0.014 1.116 sum 1.460 -0.349 0.662 1.641 Atomic orbital electron populations 1.23342 0.75779 1.04042 1.02759 1.86521 1.23773 1.32838 1.83383 1.23436 0.90924 0.81902 0.72188 1.90695 1.65997 1.36362 1.45028 1.20697 0.85066 0.86678 0.98609 1.44121 1.55456 1.27166 1.08157 1.17948 0.77508 0.80604 0.82587 1.90944 1.45406 1.50883 1.57315 1.86317 1.73853 1.37577 1.29580 1.22157 0.96452 0.96289 0.75018 1.22528 1.01098 1.00230 1.00327 1.21883 1.01643 0.94143 1.02239 1.22515 0.94354 1.04519 1.02685 1.23932 0.98841 1.01201 0.93736 1.22478 0.97945 0.83410 0.92124 0.85336 1.43967 1.12242 1.15034 1.60657 1.23809 0.91251 0.93075 0.96109 1.66451 1.01421 1.33335 1.25813 1.21333 0.95533 0.92685 0.93223 1.24308 0.98843 0.99287 1.15766 1.23672 0.96812 1.04858 0.87731 1.86511 1.60349 1.55035 1.33271 0.95128 0.86303 0.77293 0.84589 1.84158 1.12021 1.14931 1.56464 1.23788 0.97646 0.94966 1.00482 0.87848 0.91649 0.91650 0.74655 0.92005 0.90869 0.89459 0.91318 0.89885 0.91304 0.89524 0.90916 0.92029 0.88176 0.86860 0.74396 0.80383 0.90005 0.76861 1.16583 1.16234 0.86663 0.88046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.02 10.56 101.05 1.07 1.09 16 2 O -0.35 -0.95 10.23 -39.24 -0.40 -1.36 16 3 C 0.48 1.46 6.58 36.01 0.24 1.69 16 4 O -0.49 -2.53 15.80 -18.75 -0.30 -2.83 16 5 C 0.18 0.08 1.01 -132.16 -0.13 -0.06 16 6 N -0.69 -0.08 4.92 -52.79 -0.26 -0.34 16 7 C 0.66 1.70 7.56 54.06 0.41 2.11 16 8 O -0.56 -2.60 10.43 -19.28 -0.20 -2.80 16 9 O -0.36 -0.79 9.94 -40.31 -0.40 -1.19 16 10 C 0.14 0.16 1.13 -90.62 -0.10 0.06 16 11 C -0.18 -0.20 8.37 37.16 0.31 0.11 16 12 C -0.14 0.11 8.85 37.16 0.33 0.44 16 13 C -0.18 -0.25 8.37 37.16 0.31 0.06 16 14 C -0.14 0.20 7.16 -25.92 -0.19 0.01 16 15 C 0.15 -0.10 4.27 -67.12 -0.29 -0.39 16 16 H 0.13 0.01 7.66 -51.93 -0.40 -0.39 16 17 N -0.68 0.13 5.51 -54.99 -0.30 -0.17 16 18 C 0.33 0.70 8.09 -87.68 -0.71 -0.01 16 19 N -0.55 -1.80 9.83 -15.21 -0.15 -1.94 16 20 C 0.12 0.33 11.22 -19.14 -0.21 0.12 16 21 C -0.26 -0.62 5.78 -36.03 -0.21 -0.83 16 22 C -0.02 0.00 2.98 36.00 0.11 0.11 16 23 O -0.55 0.09 12.85 -35.23 -0.45 -0.37 16 24 Si 0.67 -0.59 31.05 -169.99 -5.28 -5.87 16 25 S 0.08 0.17 20.57 -107.50 -2.21 -2.05 16 26 C -0.13 -0.02 6.59 -25.92 -0.17 -0.19 16 27 H 0.10 -0.19 8.14 -51.93 -0.42 -0.61 16 28 H 0.06 0.00 8.13 -51.93 -0.42 -0.42 16 29 H 0.06 0.07 8.13 -51.93 -0.42 -0.35 16 30 H 0.42 -0.88 8.77 -40.82 -0.36 -1.24 16 31 H 0.06 0.05 8.14 -51.94 -0.42 -0.37 16 32 H 0.07 -0.01 8.14 -51.93 -0.42 -0.43 16 33 H 0.09 0.27 5.88 -51.93 -0.31 -0.04 16 34 H 0.07 -0.06 8.14 -51.93 -0.42 -0.48 16 35 H 0.08 -0.17 8.14 -51.93 -0.42 -0.59 16 36 H 0.07 -0.06 8.14 -51.93 -0.42 -0.49 16 37 H 0.09 0.31 5.88 -51.93 -0.31 0.01 16 38 H 0.07 0.00 8.14 -51.93 -0.42 -0.42 16 39 H 0.06 0.07 8.14 -51.93 -0.42 -0.35 16 40 H 0.10 -0.26 8.09 -51.93 -0.42 -0.68 16 41 H 0.11 -0.16 8.10 -51.93 -0.42 -0.58 16 42 H 0.42 -0.78 8.85 -40.82 -0.36 -1.14 16 43 H 0.18 0.18 8.06 -52.48 -0.42 -0.25 16 44 H 0.08 -0.17 7.96 -51.93 -0.41 -0.58 16 45 H 0.38 -2.03 8.74 45.56 0.40 -1.63 16 46 H -0.24 -0.36 7.11 56.52 0.40 0.05 16 47 H -0.24 -0.56 7.11 56.52 0.40 -0.16 16 48 H 0.12 0.03 7.36 -51.93 -0.38 -0.35 16 49 H 0.10 0.14 7.20 -51.93 -0.37 -0.24 16 LS Contribution 417.83 15.07 6.30 6.30 Total: 0.00 -9.94 417.83 -10.09 -20.03 By element: Atomic # 1 Polarization: -4.55 SS G_CDS: -7.19 Total: -11.74 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: 0.76 Total: 4.32 kcal Atomic # 7 Polarization: -1.74 SS G_CDS: -0.71 Total: -2.45 kcal Atomic # 8 Polarization: -6.79 SS G_CDS: -1.75 Total: -8.54 kcal Atomic # 14 Polarization: -0.59 SS G_CDS: -5.28 Total: -5.87 kcal Atomic # 16 Polarization: 0.17 SS G_CDS: -2.21 Total: -2.05 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -9.94 -10.09 -20.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_13976898_15704118.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.850 kcal (2) G-P(sol) polarization free energy of solvation -9.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds