Wall clock time and date at job start Mon Mar 8 2021 04:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45209 * 1 3 3 C 1.34223 * 116.99874 * 2 1 4 4 O 1.20830 * 120.00357 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99987 * 179.97438 * 3 2 1 6 6 N 1.46504 * 112.84879 * 24.44556 * 5 3 2 7 7 C 1.34777 * 119.99950 * 65.89152 * 6 5 3 8 8 O 1.21506 * 120.00027 * 5.01718 * 7 6 5 9 9 O 1.34634 * 119.99807 * 185.01358 * 7 6 5 10 10 C 1.45200 * 116.99655 * 180.02562 * 9 7 6 11 11 C 1.53003 * 109.47029 * 60.00535 * 10 9 7 12 12 C 1.53008 * 109.46783 * 179.97438 * 10 9 7 13 13 C 1.52996 * 109.47408 * 300.00112 * 10 9 7 14 14 C 1.53784 * 113.69110 * 253.17869 * 5 3 2 15 15 C 1.53778 * 87.08046 * 220.00446 * 14 5 3 16 16 H 1.08995 * 113.61631 * 270.87997 * 15 14 5 17 17 N 1.46503 * 113.61196 * 139.97711 * 15 14 5 18 18 C 1.38609 * 119.99763 * 107.50437 * 17 15 14 19 19 N 1.29689 * 124.94962 * 0.02700 * 18 17 15 20 20 C 1.32122 * 116.86907 * 179.97438 * 19 18 17 21 21 C 1.33328 * 114.57866 * 0.02562 * 20 19 18 22 22 C 1.50693 * 125.95215 * 180.02562 * 21 20 19 23 23 O 1.42905 * 109.47266 * 299.99467 * 22 21 20 24 24 Si 1.86304 * 109.47310 * 179.97438 * 22 21 20 25 25 S 1.70969 * 124.95183 * 179.71839 * 18 17 15 26 26 C 1.53778 * 113.61605 * 155.64168 * 5 3 2 27 27 H 1.08997 * 109.47069 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47039 * 300.00396 * 1 2 3 29 29 H 1.09001 * 109.46841 * 60.00307 * 1 2 3 30 30 H 0.96995 * 119.99909 * 245.89474 * 6 5 3 31 31 H 1.08987 * 109.47343 * 59.99622 * 11 10 9 32 32 H 1.08997 * 109.46966 * 180.02562 * 11 10 9 33 33 H 1.08998 * 109.46516 * 299.99246 * 11 10 9 34 34 H 1.09000 * 109.46889 * 60.00019 * 12 10 9 35 35 H 1.08997 * 109.46773 * 179.97438 * 12 10 9 36 36 H 1.09001 * 109.47184 * 300.00166 * 12 10 9 37 37 H 1.08997 * 109.47139 * 59.99555 * 13 10 9 38 38 H 1.09002 * 109.47234 * 180.02562 * 13 10 9 39 39 H 1.09002 * 109.46737 * 299.99873 * 13 10 9 40 40 H 1.08994 * 113.61349 * 105.45693 * 14 5 3 41 41 H 1.08996 * 113.61098 * 334.55312 * 14 5 3 42 42 H 0.96998 * 120.00660 * 287.50330 * 17 15 14 43 43 H 1.08003 * 122.71304 * 179.97438 * 20 19 18 44 44 H 1.08997 * 109.47487 * 59.99927 * 22 21 20 45 45 H 0.96701 * 113.99685 * 179.97438 * 23 22 21 46 46 H 1.48496 * 110.00058 * 298.68383 * 24 22 21 47 47 H 1.48505 * 109.99523 * 60.00007 * 24 22 21 48 48 H 1.08998 * 113.61387 * 25.51830 * 26 5 3 49 49 H 1.09000 * 113.69206 * 254.62229 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2749 0.0006 6 7 4.1990 0.0772 -0.5576 7 6 4.0375 -0.2250 -1.8611 8 8 3.4443 0.5419 -2.5935 9 8 4.5334 -1.3765 -2.3517 10 6 4.3224 -1.6361 -3.7646 11 6 4.9725 -0.5239 -4.5901 12 6 4.9520 -2.9803 -4.1357 13 6 2.8212 -1.6773 -4.0571 14 6 4.1616 1.7144 1.3487 15 6 5.1650 2.5554 0.5421 16 1 6.0727 2.0145 0.2749 17 7 5.4365 3.8692 1.1309 18 6 6.6551 4.1155 1.7438 19 7 7.6205 3.2561 1.8499 20 6 8.7161 3.6619 2.4667 21 6 8.6735 4.9215 2.9016 22 6 9.7756 5.6425 3.6339 23 8 10.0711 4.9517 4.8495 24 14 9.2290 7.3803 4.0238 25 16 7.1074 5.5989 2.4634 26 6 4.1146 2.5888 -0.5806 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 4.7342 -0.4984 0.0109 31 1 6.0419 -0.4945 -4.3817 32 1 4.8138 -0.7185 -5.6507 33 1 4.5244 0.4339 -4.3258 34 1 4.4893 -3.7729 -3.5477 35 1 4.7933 -3.1754 -5.1963 36 1 6.0215 -2.9505 -3.9275 37 1 2.3731 -0.7195 -3.7927 38 1 2.6629 -1.8726 -5.1177 39 1 2.3582 -2.4697 -3.4690 40 1 4.6237 0.9010 1.9079 41 1 3.4788 2.3110 1.9536 42 1 4.7636 4.5667 1.0919 43 1 9.5765 3.0245 2.6079 44 1 10.6675 5.6743 3.0081 45 1 10.7735 5.3606 5.3735 46 1 8.9495 8.1190 2.7663 47 1 8.0135 7.3511 4.8765 48 1 3.4190 3.4243 -0.5030 49 1 4.5391 2.4827 -1.5789 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_13976898_15704118.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:44:38 Heat of formation + Delta-G solvation = -101.603771 kcal Electronic energy + Delta-G solvation = -34696.902349 eV Core-core repulsion = 29947.718899 eV Total energy + Delta-G solvation = -4749.183450 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 386.144 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -42.77449 -41.57675 -40.91391 -40.13046 -38.20442 -37.81300 -37.54820 -36.12368 -35.22393 -33.69044 -31.41564 -29.43169 -28.40383 -28.32972 -27.47704 -27.21394 -26.33047 -24.61298 -24.06767 -22.85070 -21.25797 -20.92731 -20.79249 -19.63881 -19.38506 -19.07106 -18.44063 -18.23196 -17.67106 -17.57160 -17.42233 -17.12327 -16.72455 -16.36402 -15.95689 -15.84820 -15.73510 -15.44284 -15.38254 -14.94564 -14.71494 -14.61547 -14.48931 -14.32926 -13.86349 -13.74894 -13.68804 -13.36908 -13.23075 -13.15561 -12.95745 -12.90344 -12.90270 -12.70022 -12.59512 -12.52627 -12.39993 -12.30604 -12.15206 -11.97106 -11.84743 -11.44334 -11.34384 -11.18470 -10.79426 -10.55944 -10.42447 -10.21411 -8.89580 -5.18461 -0.20082 -0.07280 0.51354 0.71527 0.93851 1.24990 1.34519 1.57732 1.69959 1.85558 1.93341 2.05555 2.82349 2.89951 2.98703 3.34045 3.44094 3.54030 3.61908 3.69849 3.76066 3.90167 3.92324 3.98738 4.13275 4.17739 4.24865 4.37137 4.43432 4.50512 4.51544 4.56113 4.58115 4.63682 4.65094 4.68277 4.72931 4.73907 4.82126 4.85101 4.90610 5.07330 5.14216 5.15297 5.23869 5.28433 5.46903 5.67087 5.95424 6.16878 6.43543 6.81636 6.93551 7.17093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.357 6.357 3 C 0.471 3.529 4 O -0.522 6.522 5 C 0.178 3.822 6 N -0.675 5.675 7 C 0.655 3.345 8 O -0.582 6.582 9 O -0.362 6.362 10 C 0.129 3.871 11 C -0.181 4.181 12 C -0.138 4.138 13 C -0.179 4.179 14 C -0.124 4.124 15 C 0.157 3.843 16 H 0.125 0.875 17 N -0.673 5.673 18 C 0.327 3.673 19 N -0.562 5.562 20 C 0.112 3.888 21 C -0.272 4.272 22 C -0.021 4.021 23 O -0.562 6.562 24 Si 0.752 3.248 25 S 0.055 5.945 26 C -0.126 4.126 27 H 0.128 0.872 28 H 0.069 0.931 29 H 0.055 0.945 30 H 0.428 0.572 31 H 0.064 0.936 32 H 0.086 0.914 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.098 0.902 36 H 0.071 0.929 37 H 0.061 0.939 38 H 0.086 0.914 39 H 0.062 0.938 40 H 0.119 0.881 41 H 0.117 0.883 42 H 0.425 0.575 43 H 0.192 0.808 44 H 0.107 0.893 45 H 0.405 0.595 46 H -0.275 1.275 47 H -0.286 1.286 48 H 0.113 0.887 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.569 -1.318 2.004 5.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.273 6.273 3 C 0.313 3.687 4 O -0.410 6.410 5 C 0.088 3.912 6 N -0.337 5.337 7 C 0.409 3.591 8 O -0.471 6.471 9 O -0.276 6.276 10 C 0.093 3.907 11 C -0.238 4.238 12 C -0.195 4.195 13 C -0.236 4.236 14 C -0.163 4.163 15 C 0.049 3.951 16 H 0.143 0.857 17 N -0.312 5.312 18 C -0.044 4.044 19 N -0.288 5.288 20 C -0.038 4.038 21 C -0.394 4.394 22 C -0.134 4.134 23 O -0.372 6.372 24 Si 0.656 3.344 25 S 0.303 5.697 26 C -0.165 4.165 27 H 0.146 0.854 28 H 0.088 0.912 29 H 0.074 0.926 30 H 0.268 0.732 31 H 0.083 0.917 32 H 0.105 0.895 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.117 0.883 36 H 0.090 0.910 37 H 0.080 0.920 38 H 0.105 0.895 39 H 0.081 0.919 40 H 0.137 0.863 41 H 0.135 0.865 42 H 0.265 0.735 43 H 0.209 0.791 44 H 0.124 0.876 45 H 0.257 0.743 46 H -0.201 1.201 47 H -0.213 1.213 48 H 0.131 0.869 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.366 -0.247 1.122 2.630 hybrid contribution -0.161 -0.780 -0.164 0.813 sum 2.205 -1.027 0.958 2.614 Atomic orbital electron populations 1.23544 0.74799 1.05640 1.02502 1.86517 1.24905 1.32728 1.83107 1.23924 0.91843 0.81627 0.71315 1.90675 1.66789 1.37102 1.46401 1.20753 0.83786 0.86756 0.99886 1.44040 1.55002 1.27161 1.07538 1.18145 0.77320 0.80541 0.83072 1.90939 1.46482 1.51598 1.58119 1.86325 1.73761 1.37259 1.30280 1.22385 0.96445 0.97341 0.74564 1.22480 1.00979 0.99152 1.01169 1.21898 1.01590 0.92756 1.03241 1.22461 0.94486 1.03072 1.03609 1.23911 0.98182 1.01411 0.92841 1.22375 0.97627 0.83255 0.91855 0.85702 1.44019 1.11753 1.15458 1.59975 1.23929 0.91600 0.92832 0.96007 1.66466 1.01922 1.33840 1.26573 1.21594 0.95854 0.93097 0.93294 1.24667 0.99169 0.99515 1.16050 1.23792 0.97074 1.04381 0.88179 1.86459 1.61622 1.55662 1.33481 0.94221 0.83810 0.75440 0.80886 1.84226 1.12920 1.15569 1.56951 1.23725 0.97797 0.94912 1.00094 0.85376 0.91200 0.92637 0.73243 0.91738 0.89516 0.91709 0.91118 0.88305 0.91012 0.92017 0.89479 0.91917 0.86308 0.86480 0.73523 0.79130 0.87550 0.74309 1.20131 1.21280 0.86890 0.89355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.05 10.56 113.37 1.20 1.24 16 2 O -0.36 -2.18 10.23 -51.35 -0.53 -2.71 16 3 C 0.47 3.34 6.58 71.24 0.47 3.81 16 4 O -0.52 -6.06 15.80 21.95 0.35 -5.71 16 5 C 0.18 0.26 1.01 3.38 0.00 0.26 16 6 N -0.67 -0.43 4.92 -551.33 -2.71 -3.14 16 7 C 0.66 3.98 7.56 129.79 0.98 4.97 16 8 O -0.58 -6.43 10.43 19.82 0.21 -6.23 16 9 O -0.36 -1.74 9.94 -55.44 -0.55 -2.29 16 10 C 0.13 0.32 1.13 -10.79 -0.01 0.31 16 11 C -0.18 -0.48 8.37 71.98 0.60 0.12 16 12 C -0.14 0.34 8.85 71.98 0.64 0.98 16 13 C -0.18 -0.57 8.37 71.98 0.60 0.03 16 14 C -0.12 0.39 7.16 31.12 0.22 0.61 16 15 C 0.16 -0.17 4.27 45.52 0.19 0.02 16 16 H 0.13 0.04 7.66 -2.39 -0.02 0.02 16 17 N -0.67 -0.05 5.51 -327.89 -1.81 -1.86 16 18 C 0.33 1.55 8.09 179.32 1.45 3.00 16 19 N -0.56 -3.81 9.83 -202.02 -1.99 -5.79 16 20 C 0.11 0.60 11.22 83.54 0.94 1.54 16 21 C -0.27 -1.31 5.78 24.57 0.14 -1.16 16 22 C -0.02 0.02 2.98 71.23 0.21 0.24 16 23 O -0.56 0.79 12.85 -148.98 -1.91 -1.12 16 24 Si 0.75 -1.27 31.05 68.60 2.13 0.86 16 25 S 0.05 0.29 20.57 -56.49 -1.16 -0.87 16 26 C -0.13 -0.18 6.59 31.12 0.21 0.02 16 27 H 0.13 -0.50 8.14 -2.39 -0.02 -0.52 16 28 H 0.07 0.05 8.13 -2.39 -0.02 0.03 16 29 H 0.05 0.20 8.13 -2.39 -0.02 0.18 16 30 H 0.43 -1.92 8.77 -92.71 -0.81 -2.73 16 31 H 0.06 0.12 8.14 -2.39 -0.02 0.10 16 32 H 0.09 -0.04 8.14 -2.39 -0.02 -0.06 16 33 H 0.06 0.50 5.88 -2.39 -0.01 0.49 16 34 H 0.07 -0.18 8.14 -2.39 -0.02 -0.20 16 35 H 0.10 -0.55 8.14 -2.39 -0.02 -0.57 16 36 H 0.07 -0.20 8.14 -2.39 -0.02 -0.22 16 37 H 0.06 0.54 5.88 -2.39 -0.01 0.53 16 38 H 0.09 -0.02 8.14 -2.39 -0.02 -0.04 16 39 H 0.06 0.17 8.14 -2.39 -0.02 0.15 16 40 H 0.12 -0.77 8.09 -2.39 -0.02 -0.79 16 41 H 0.12 -0.38 8.10 -2.39 -0.02 -0.40 16 42 H 0.43 -1.31 8.85 -92.71 -0.82 -2.13 16 43 H 0.19 0.30 8.06 -2.91 -0.02 0.28 16 44 H 0.11 -0.63 7.96 -2.39 -0.02 -0.65 16 45 H 0.41 -4.92 8.74 -74.06 -0.65 -5.57 16 46 H -0.28 -1.01 7.11 99.48 0.71 -0.30 16 47 H -0.29 -1.75 7.11 99.48 0.71 -1.04 16 48 H 0.11 0.22 7.36 -2.39 -0.02 0.21 16 49 H 0.09 0.39 7.20 -2.39 -0.02 0.38 16 Total: 0.00 -24.39 417.83 -1.35 -25.74 By element: Atomic # 1 Polarization: -11.64 SS G_CDS: -1.22 Total: -12.86 kcal Atomic # 6 Polarization: 8.14 SS G_CDS: 7.84 Total: 15.98 kcal Atomic # 7 Polarization: -4.29 SS G_CDS: -6.50 Total: -10.79 kcal Atomic # 8 Polarization: -15.62 SS G_CDS: -2.44 Total: -18.06 kcal Atomic # 14 Polarization: -1.27 SS G_CDS: 2.13 Total: 0.86 kcal Atomic # 16 Polarization: 0.29 SS G_CDS: -1.16 Total: -0.87 kcal Total: -24.39 -1.35 -25.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_13976898_15704118.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.862 kcal (2) G-P(sol) polarization free energy of solvation -24.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds