Wall clock time and date at job start Mon Mar 8 2021 04:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34224 * 117.00131 * 2 1 4 4 O 1.20824 * 120.00229 * 359.97438 * 3 2 1 5 5 C 1.50694 * 119.99868 * 179.97438 * 3 2 1 6 6 N 1.46501 * 112.85393 * 34.68543 * 5 3 2 7 7 C 1.34778 * 119.99621 * 69.00772 * 6 5 3 8 8 O 1.21511 * 120.00149 * 355.04887 * 7 6 5 9 9 O 1.34638 * 119.99887 * 175.03921 * 7 6 5 10 10 C 1.45204 * 117.00312 * 180.02562 * 9 7 6 11 11 C 1.53007 * 109.46943 * 60.00196 * 10 9 7 12 12 C 1.52992 * 109.47277 * 180.02562 * 10 9 7 13 13 C 1.53002 * 109.46990 * 300.00877 * 10 9 7 14 14 C 1.53778 * 113.69172 * 263.41533 * 5 3 2 15 15 C 1.53782 * 87.08580 * 220.00917 * 14 5 3 16 16 H 1.08999 * 113.61117 * 270.88575 * 15 14 5 17 17 N 1.46499 * 113.69158 * 139.99143 * 15 14 5 18 18 C 1.38611 * 119.99928 * 107.46434 * 17 15 14 19 19 N 1.29686 * 124.94918 * 179.97438 * 18 17 15 20 20 C 1.32127 * 116.86503 * 179.97438 * 19 18 17 21 21 C 1.50697 * 122.70607 * 179.97438 * 20 19 18 22 22 O 1.42909 * 109.46844 * 222.78277 * 21 20 19 23 23 Si 1.86298 * 109.47650 * 342.78254 * 21 20 19 24 24 C 1.33328 * 114.57869 * 0.02562 * 20 19 18 25 25 C 1.50696 * 125.94897 * 179.97438 * 24 20 19 26 26 S 1.70973 * 124.94914 * 359.69756 * 18 17 15 27 27 C 1.53775 * 87.07789 * 25.43323 * 15 14 5 28 28 H 1.08998 * 109.47311 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47237 * 300.00869 * 1 2 3 30 30 H 1.09002 * 109.46499 * 60.00247 * 1 2 3 31 31 H 0.96995 * 120.00460 * 249.01500 * 6 5 3 32 32 H 1.09005 * 109.46511 * 60.00237 * 11 10 9 33 33 H 1.08995 * 109.46927 * 180.02562 * 11 10 9 34 34 H 1.09000 * 109.47260 * 300.00581 * 11 10 9 35 35 H 1.08998 * 109.47112 * 60.00247 * 12 10 9 36 36 H 1.09007 * 109.47070 * 180.02562 * 12 10 9 37 37 H 1.08993 * 109.47543 * 300.00098 * 12 10 9 38 38 H 1.08994 * 109.47451 * 59.99790 * 13 10 9 39 39 H 1.09007 * 109.46822 * 179.97438 * 13 10 9 40 40 H 1.08998 * 109.47018 * 299.99519 * 13 10 9 41 41 H 1.08999 * 113.61334 * 334.55999 * 14 5 3 42 42 H 1.09007 * 113.61483 * 105.46043 * 14 5 3 43 43 H 0.97000 * 119.99964 * 287.47299 * 17 15 14 44 44 H 1.08997 * 109.47103 * 102.78886 * 21 20 19 45 45 H 0.96701 * 113.99548 * 180.02562 * 22 21 20 46 46 H 1.48497 * 110.00200 * 178.68082 * 23 21 20 47 47 H 1.48502 * 109.99928 * 300.00554 * 23 21 20 48 48 H 1.09004 * 109.47354 * 84.79817 * 25 24 20 49 49 H 1.08992 * 109.47204 * 204.79520 * 25 24 20 50 50 H 1.09003 * 109.47555 * 324.79583 * 25 24 20 51 51 H 1.09007 * 113.61734 * 220.01709 * 27 15 14 52 52 H 1.09008 * 113.61628 * 89.11770 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4035 2.2093 -0.0005 5 6 3.5663 1.2747 0.0006 6 7 4.1929 0.1957 -0.7672 7 6 4.0712 0.1651 -2.1091 8 8 3.3684 0.9794 -2.6742 9 8 4.7286 -0.7677 -2.8235 10 6 4.5514 -0.7407 -4.2644 11 6 5.0270 0.6068 -4.8115 12 6 5.3688 -1.8669 -4.9001 13 6 3.0711 -0.9334 -4.5999 14 6 4.1744 1.4686 1.3997 15 6 5.1710 2.4404 0.7460 16 1 6.0757 1.9561 0.3785 17 7 5.4504 3.6294 1.5548 18 6 6.6751 3.7634 2.1900 19 7 7.0236 4.7724 2.9265 20 6 8.2331 4.7348 3.4571 21 6 8.7726 5.8360 4.3329 22 8 10.1287 6.1089 3.9740 23 14 7.7471 7.3738 4.0998 24 6 8.9379 3.6443 3.1541 25 6 10.3388 3.3392 3.6182 26 16 7.9440 2.6195 2.1220 27 6 4.1103 2.6715 -0.3431 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5140 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 4.6952 -0.4966 -0.3098 32 1 6.0816 0.7441 -4.5724 33 1 4.8936 0.6273 -5.8931 34 1 4.4444 1.4089 -4.3586 35 1 5.0296 -2.8266 -4.5103 36 1 5.2361 -1.8463 -5.9819 37 1 6.4234 -1.7300 -4.6611 38 1 2.4885 -0.1312 -4.1471 39 1 2.9381 -0.9126 -5.6817 40 1 2.7322 -1.8932 -4.2102 41 1 3.4977 1.9476 2.1073 42 1 4.6412 0.5691 1.8014 43 1 4.7783 4.3229 1.6460 44 1 8.7286 5.5247 5.3766 45 1 10.5411 6.8088 4.4985 46 1 8.2494 8.4578 4.9817 47 1 7.7989 7.8085 2.6807 48 1 10.3020 2.8732 4.6029 49 1 10.8154 2.6593 2.9122 50 1 10.9123 4.2644 3.6752 51 1 4.5251 2.7433 -1.3486 52 1 3.4160 3.4795 -0.1120 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_13976898_15704122.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:44:42 Heat of formation + Delta-G solvation = -104.468916 kcal Electronic energy + Delta-G solvation = -37011.687133 eV Core-core repulsion = 32106.841823 eV Total energy + Delta-G solvation = -4904.845311 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 400.159 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -42.74512 -41.55121 -41.03124 -40.26539 -38.23151 -37.83377 -37.54076 -36.14797 -35.22888 -33.84448 -32.43248 -29.59709 -29.09803 -28.39414 -28.31580 -27.29346 -26.82472 -25.59381 -24.32637 -24.03665 -22.79568 -21.25332 -21.01048 -20.04967 -19.61479 -19.35620 -18.99573 -18.42699 -18.07295 -17.55621 -17.49471 -17.38448 -17.11962 -16.65954 -16.29689 -16.14411 -15.75702 -15.72044 -15.53723 -15.37050 -14.93837 -14.58268 -14.49443 -14.23980 -14.11609 -13.97744 -13.77814 -13.67564 -13.60862 -13.38266 -13.32684 -13.17939 -13.08853 -13.01920 -12.94640 -12.88889 -12.77658 -12.58866 -12.40017 -12.35625 -12.23175 -11.91615 -11.83249 -11.74422 -11.43180 -11.20279 -11.05362 -10.69281 -10.55170 -10.46293 -10.04446 -8.66708 -4.77851 -0.03683 0.13280 0.69935 0.71436 1.03359 1.31988 1.36629 1.61118 1.66613 1.81167 1.94567 2.04955 2.82293 2.92559 2.97944 3.14519 3.27912 3.57391 3.70677 3.77011 3.79694 3.88531 3.92030 4.12992 4.18755 4.22044 4.24110 4.37960 4.39138 4.41138 4.44416 4.53004 4.59044 4.61282 4.68096 4.70342 4.74843 4.75186 4.81597 4.83547 4.86676 4.88517 4.97072 5.12179 5.16856 5.20959 5.24855 5.29419 5.36721 5.48665 5.57086 6.19072 6.26366 6.50569 6.62601 6.87384 7.18722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.356 6.356 3 C 0.470 3.530 4 O -0.522 6.522 5 C 0.176 3.824 6 N -0.673 5.673 7 C 0.652 3.348 8 O -0.582 6.582 9 O -0.359 6.359 10 C 0.130 3.870 11 C -0.181 4.181 12 C -0.138 4.138 13 C -0.180 4.180 14 C -0.123 4.123 15 C 0.143 3.857 16 H 0.126 0.874 17 N -0.675 5.675 18 C 0.309 3.691 19 N -0.559 5.559 20 C 0.085 3.915 21 C -0.041 4.041 22 O -0.547 6.547 23 Si 0.774 3.226 24 C -0.244 4.244 25 C -0.073 4.073 26 S 0.133 5.867 27 C -0.125 4.125 28 H 0.129 0.871 29 H 0.069 0.931 30 H 0.052 0.948 31 H 0.431 0.569 32 H 0.065 0.935 33 H 0.084 0.916 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.097 0.903 37 H 0.072 0.928 38 H 0.060 0.940 39 H 0.085 0.915 40 H 0.063 0.937 41 H 0.122 0.878 42 H 0.131 0.869 43 H 0.419 0.581 44 H 0.105 0.895 45 H 0.399 0.601 46 H -0.279 1.279 47 H -0.324 1.324 48 H 0.078 0.922 49 H 0.067 0.933 50 H 0.093 0.907 51 H 0.086 0.914 52 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.547 -6.912 2.615 7.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.271 6.271 3 C 0.312 3.688 4 O -0.410 6.410 5 C 0.087 3.913 6 N -0.336 5.336 7 C 0.406 3.594 8 O -0.472 6.472 9 O -0.274 6.274 10 C 0.094 3.906 11 C -0.239 4.239 12 C -0.195 4.195 13 C -0.238 4.238 14 C -0.163 4.163 15 C 0.037 3.963 16 H 0.144 0.856 17 N -0.315 5.315 18 C -0.062 4.062 19 N -0.287 5.287 20 C -0.045 4.045 21 C -0.153 4.153 22 O -0.358 6.358 23 Si 0.681 3.319 24 C -0.367 4.367 25 C -0.132 4.132 26 S 0.382 5.618 27 C -0.164 4.164 28 H 0.147 0.853 29 H 0.088 0.912 30 H 0.071 0.929 31 H 0.271 0.729 32 H 0.084 0.916 33 H 0.103 0.897 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.115 0.885 37 H 0.091 0.909 38 H 0.079 0.921 39 H 0.104 0.896 40 H 0.082 0.918 41 H 0.141 0.859 42 H 0.150 0.850 43 H 0.259 0.741 44 H 0.123 0.877 45 H 0.250 0.750 46 H -0.206 1.206 47 H -0.253 1.253 48 H 0.096 0.904 49 H 0.086 0.914 50 H 0.112 0.888 51 H 0.105 0.895 52 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 0.605 -6.598 1.072 6.711 hybrid contribution 0.600 1.237 0.395 1.431 sum 1.204 -5.360 1.466 5.686 Atomic orbital electron populations 1.23534 0.74935 1.05627 1.02399 1.86505 1.24757 1.32665 1.83193 1.23943 0.91935 0.81574 0.71364 1.90684 1.66931 1.37262 1.46091 1.20756 0.83932 0.89584 0.97029 1.44038 1.57147 1.29730 1.02701 1.18213 0.78318 0.79854 0.83023 1.90970 1.42933 1.42796 1.70515 1.86323 1.66210 1.51881 1.22961 1.22366 0.96798 0.97832 0.73628 1.22490 1.01902 0.96616 1.02852 1.21894 1.00029 0.96279 1.01287 1.22473 0.94993 1.02663 1.03637 1.23982 0.98000 1.02532 0.91768 1.22512 0.97988 0.85312 0.90501 0.85613 1.43876 1.11826 1.23964 1.51847 1.23431 0.93418 0.93823 0.95551 1.65580 1.18142 1.27048 1.17893 1.19051 0.88960 0.95927 1.00532 1.24048 0.88245 1.04069 0.98939 1.86444 1.24097 1.60218 1.65021 0.93021 0.88873 0.73128 0.76877 1.25428 1.03942 0.98723 1.08641 1.20324 0.88465 1.03508 1.00937 1.83638 1.05947 1.22163 1.50061 1.23676 0.97589 0.94528 1.00627 0.85283 0.91194 0.92937 0.72899 0.91594 0.89681 0.91732 0.91006 0.88475 0.90912 0.92059 0.89599 0.91790 0.85940 0.85036 0.74104 0.87704 0.74965 1.20586 1.25331 0.90369 0.91387 0.88816 0.89533 0.86758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.01 10.56 113.37 1.20 1.20 16 2 O -0.36 -1.36 10.40 -51.36 -0.53 -1.90 16 3 C 0.47 2.40 6.55 71.23 0.47 2.86 16 4 O -0.52 -5.61 15.67 21.97 0.34 -5.27 16 5 C 0.18 -0.28 1.00 3.38 0.00 -0.28 16 6 N -0.67 1.81 5.00 -551.33 -2.76 -0.94 16 7 C 0.65 2.44 7.53 129.79 0.98 3.41 16 8 O -0.58 -5.66 10.53 19.81 0.21 -5.46 16 9 O -0.36 -0.87 9.94 -55.47 -0.55 -1.42 16 10 C 0.13 0.13 1.13 -10.79 -0.01 0.12 16 11 C -0.18 -0.28 8.37 71.98 0.60 0.32 16 12 C -0.14 0.53 8.85 71.98 0.64 1.17 16 13 C -0.18 -0.38 8.37 71.98 0.60 0.22 16 14 C -0.12 0.96 7.17 31.12 0.22 1.18 16 15 C 0.14 -0.75 4.13 45.52 0.19 -0.57 16 16 H 0.13 -0.85 7.06 -2.39 -0.02 -0.87 16 17 N -0.67 1.36 5.51 -327.90 -1.81 -0.45 16 18 C 0.31 0.83 8.24 179.32 1.48 2.30 16 19 N -0.56 -3.66 8.64 -189.85 -1.64 -5.30 16 20 C 0.08 0.52 6.03 41.40 0.25 0.77 16 21 C -0.04 -0.09 2.75 71.23 0.20 0.10 16 22 O -0.55 -0.96 10.08 -148.98 -1.50 -2.46 16 23 Si 0.77 3.05 31.90 68.60 2.19 5.24 16 24 C -0.24 -1.05 6.49 24.57 0.16 -0.89 16 25 C -0.07 -0.06 9.97 71.23 0.71 0.65 16 26 S 0.13 0.05 21.69 -56.49 -1.23 -1.18 16 27 C -0.12 0.11 6.56 31.12 0.20 0.31 16 28 H 0.13 -0.71 8.14 -2.39 -0.02 -0.73 16 29 H 0.07 -0.05 8.13 -2.39 -0.02 -0.07 16 30 H 0.05 0.15 8.13 -2.39 -0.02 0.13 16 31 H 0.43 -3.80 8.79 -92.71 -0.82 -4.62 16 32 H 0.07 0.03 8.14 -2.38 -0.02 0.01 16 33 H 0.08 -0.10 8.14 -2.39 -0.02 -0.12 16 34 H 0.06 0.44 5.88 -2.39 -0.01 0.42 16 35 H 0.07 -0.30 8.14 -2.39 -0.02 -0.32 16 36 H 0.10 -0.63 8.14 -2.38 -0.02 -0.65 16 37 H 0.07 -0.31 8.14 -2.39 -0.02 -0.33 16 38 H 0.06 0.48 5.88 -2.39 -0.01 0.47 16 39 H 0.09 -0.08 8.14 -2.38 -0.02 -0.10 16 40 H 0.06 0.09 8.14 -2.39 -0.02 0.07 16 41 H 0.12 -0.94 8.10 -2.39 -0.02 -0.96 16 42 H 0.13 -1.73 8.10 -2.38 -0.02 -1.75 16 43 H 0.42 -1.12 8.85 -92.71 -0.82 -1.94 16 44 H 0.11 -0.26 7.96 -2.39 -0.02 -0.28 16 45 H 0.40 -2.65 8.74 -74.06 -0.65 -3.30 16 46 H -0.28 -1.49 7.11 99.48 0.71 -0.78 16 47 H -0.32 -4.70 7.11 99.48 0.71 -3.99 16 48 H 0.08 -0.11 8.14 -2.38 -0.02 -0.13 16 49 H 0.07 -0.04 8.14 -2.39 -0.02 -0.06 16 50 H 0.09 0.20 5.58 -2.39 -0.01 0.19 16 51 H 0.09 0.19 7.24 -2.38 -0.02 0.17 16 52 H 0.11 0.09 7.32 -2.38 -0.02 0.07 16 Total: 0.00 -25.05 434.49 -0.65 -25.70 By element: Atomic # 1 Polarization: -18.21 SS G_CDS: -1.25 Total: -19.46 kcal Atomic # 6 Polarization: 5.01 SS G_CDS: 7.88 Total: 12.89 kcal Atomic # 7 Polarization: -0.49 SS G_CDS: -6.21 Total: -6.70 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: -2.03 Total: -16.50 kcal Atomic # 14 Polarization: 3.05 SS G_CDS: 2.19 Total: 5.24 kcal Atomic # 16 Polarization: 0.05 SS G_CDS: -1.23 Total: -1.18 kcal Total: -25.05 -0.65 -25.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_13976898_15704122.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.767 kcal (2) G-P(sol) polarization free energy of solvation -25.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds