Wall clock time and date at job start Mon Mar 8 2021 04:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34231 * 116.99975 * 2 1 4 4 O 1.20823 * 120.00103 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99696 * 180.02562 * 3 2 1 6 6 N 1.46500 * 112.85136 * 324.46117 * 5 3 2 7 7 C 1.34779 * 120.00393 * 294.09316 * 6 5 3 8 8 O 1.21513 * 119.99622 * 355.00851 * 7 6 5 9 9 O 1.34633 * 120.00342 * 175.00137 * 7 6 5 10 10 C 1.45206 * 116.99956 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.46951 * 60.00625 * 10 9 7 12 12 C 1.53006 * 109.46859 * 180.02562 * 10 9 7 13 13 C 1.52992 * 109.47005 * 300.00105 * 10 9 7 14 14 C 1.53787 * 113.61147 * 193.27113 * 5 3 2 15 15 C 1.53783 * 87.07988 * 219.93163 * 14 5 3 16 16 H 1.09002 * 113.61427 * 270.80161 * 15 14 5 17 17 N 1.46500 * 113.61283 * 139.98058 * 15 14 5 18 18 C 1.39148 * 119.99770 * 155.00140 * 17 15 14 19 19 N 1.32333 * 119.71905 * 359.97438 * 18 17 15 20 20 C 1.32007 * 121.64697 * 179.97438 * 19 18 17 21 21 C 1.37986 * 120.90177 * 359.97438 * 20 19 18 22 22 C 1.50692 * 120.32730 * 179.97438 * 21 20 19 23 23 O 1.42902 * 109.47270 * 245.00258 * 22 21 20 24 24 Si 1.86301 * 109.47407 * 5.00216 * 22 21 20 25 25 C 1.38906 * 119.34262 * 0.02562 * 21 20 19 26 26 C 1.38445 * 118.48903 * 359.74709 * 25 21 20 27 27 F 1.35104 * 120.47398 * 180.27187 * 26 25 21 28 28 C 1.53776 * 113.69333 * 95.73646 * 5 3 2 29 29 H 1.08999 * 109.46842 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47184 * 300.00205 * 1 2 3 31 31 H 1.09003 * 109.47436 * 60.00099 * 1 2 3 32 32 H 0.97003 * 119.99850 * 114.08789 * 6 5 3 33 33 H 1.08993 * 109.47077 * 59.99656 * 11 10 9 34 34 H 1.08999 * 109.46935 * 180.02562 * 11 10 9 35 35 H 1.09001 * 109.46774 * 299.99736 * 11 10 9 36 36 H 1.09005 * 109.46637 * 60.00160 * 12 10 9 37 37 H 1.08999 * 109.46822 * 179.97438 * 12 10 9 38 38 H 1.09001 * 109.47227 * 300.00568 * 12 10 9 39 39 H 1.09000 * 109.47103 * 60.00558 * 13 10 9 40 40 H 1.08999 * 109.47058 * 179.97438 * 13 10 9 41 41 H 1.08997 * 109.47609 * 300.00174 * 13 10 9 42 42 H 1.08994 * 113.61395 * 334.47947 * 14 5 3 43 43 H 1.08999 * 113.61315 * 105.29907 * 14 5 3 44 44 H 0.96999 * 119.99828 * 335.00125 * 17 15 14 45 45 H 1.08005 * 119.55074 * 180.02562 * 20 19 18 46 46 H 1.09001 * 109.47363 * 125.00909 * 22 21 20 47 47 H 0.96699 * 113.99880 * 59.99774 * 23 22 21 48 48 H 1.48500 * 109.99457 * 58.68025 * 24 22 21 49 49 H 1.48499 * 110.00087 * 179.97438 * 24 22 21 50 50 H 1.08010 * 120.75519 * 179.97438 * 25 21 20 51 51 H 1.09011 * 113.61389 * 254.53546 * 28 5 3 52 52 H 1.09000 * 113.61907 * 25.44013 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 7 4.1922 0.2074 0.7837 7 6 4.0176 0.1612 2.1193 8 8 3.4176 1.0539 2.6847 9 8 4.5077 -0.8739 2.8270 10 6 4.2816 -0.8578 4.2612 11 6 2.7773 -0.8447 4.5403 12 6 4.9066 -2.1048 4.8901 13 6 4.9232 0.3932 4.8646 14 6 4.1099 2.6766 0.3230 15 6 5.1715 2.4293 -0.7618 16 1 6.0766 1.9520 -0.3861 17 7 5.4502 3.6058 -1.5891 18 6 6.6799 3.7315 -2.2280 19 7 7.5938 2.7853 -2.0840 20 6 8.7725 2.8654 -2.6730 21 6 9.0962 3.9469 -3.4665 22 6 10.4458 4.0254 -4.1322 23 8 11.1763 5.1318 -3.5991 24 14 11.3871 2.4492 -3.8154 25 6 8.1660 4.9630 -3.6446 26 6 6.9363 4.8499 -3.0186 27 9 5.9999 5.8120 -3.1689 28 6 4.1755 1.4480 -1.4019 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 4.7323 -0.4663 0.3416 33 1 2.3203 -1.7359 4.1104 34 1 2.6076 -0.8321 5.6169 35 1 2.3325 0.0439 4.0923 36 1 5.9783 -2.1136 4.6912 37 1 4.7373 -2.0924 5.9668 38 1 4.4499 -2.9963 4.4602 39 1 4.4783 1.2818 4.4167 40 1 4.7531 0.4056 5.9411 41 1 5.9949 0.3839 4.6658 42 1 3.4158 3.4809 0.0793 43 1 4.5226 2.7635 1.3280 44 1 4.7775 4.2970 -1.6915 45 1 9.4931 2.0733 -2.5325 46 1 10.3141 4.1605 -5.2057 47 1 11.3309 5.0785 -2.6460 48 1 10.6228 1.2877 -4.3369 49 1 12.7198 2.5138 -4.4674 50 1 8.3954 5.8201 -4.2605 51 1 4.6427 0.5427 -1.7898 52 1 3.4994 1.9165 -2.1171 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_13976898_17656566.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:44:46 Heat of formation + Delta-G solvation = -155.016508 kcal Electronic energy + Delta-G solvation = -39151.012481 eV Core-core repulsion = 33840.906659 eV Total energy + Delta-G solvation = -5310.105822 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 398.178 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -49.95505 -42.72537 -41.56363 -41.37672 -40.19017 -38.23299 -37.88025 -37.54437 -36.08628 -35.22213 -33.83757 -33.14867 -31.21188 -29.36160 -28.38037 -28.29563 -27.31575 -27.12021 -26.16002 -24.91879 -24.03569 -23.03999 -22.31344 -21.21940 -20.72991 -19.45108 -19.30589 -19.25903 -18.56468 -18.30664 -18.03334 -17.57703 -17.50614 -17.33573 -17.09536 -17.00963 -16.63139 -16.09205 -16.03852 -15.82229 -15.68782 -15.37550 -15.37092 -15.14143 -14.73292 -14.50778 -14.44749 -14.30840 -14.17147 -13.78799 -13.74297 -13.63267 -13.37837 -13.33214 -13.15613 -13.12868 -12.92456 -12.86976 -12.65532 -12.55328 -12.49650 -12.35039 -12.26770 -12.11574 -11.95552 -11.77604 -11.41661 -11.33503 -11.15289 -10.72330 -10.69170 -10.51630 -10.39123 -8.81724 -4.94148 -0.08059 0.09200 0.69240 1.03949 1.34635 1.36443 1.69524 1.70700 2.00090 2.04375 2.52424 2.87359 2.98188 3.03206 3.04992 3.26587 3.46988 3.51089 3.59503 3.69370 3.72780 3.78905 3.87336 3.93533 3.96153 4.04775 4.15499 4.18920 4.34139 4.43157 4.44002 4.48365 4.52121 4.57375 4.58802 4.60729 4.71349 4.73864 4.76436 4.76702 4.81491 4.86675 4.88383 4.99919 5.02784 5.16869 5.18066 5.26349 5.31436 5.39233 5.50839 5.90104 6.13167 6.21181 6.47261 6.81460 6.90768 7.20626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.356 6.356 3 C 0.468 3.532 4 O -0.523 6.523 5 C 0.178 3.822 6 N -0.671 5.671 7 C 0.652 3.348 8 O -0.583 6.583 9 O -0.360 6.360 10 C 0.129 3.871 11 C -0.181 4.181 12 C -0.138 4.138 13 C -0.181 4.181 14 C -0.130 4.130 15 C 0.156 3.844 16 H 0.135 0.865 17 N -0.703 5.703 18 C 0.384 3.616 19 N -0.518 5.518 20 C 0.151 3.849 21 C -0.204 4.204 22 C -0.061 4.061 23 O -0.557 6.557 24 Si 0.776 3.224 25 C -0.042 4.042 26 C -0.036 4.036 27 F -0.142 7.142 28 C -0.126 4.126 29 H 0.130 0.870 30 H 0.053 0.947 31 H 0.068 0.932 32 H 0.430 0.570 33 H 0.062 0.938 34 H 0.086 0.914 35 H 0.059 0.941 36 H 0.073 0.927 37 H 0.097 0.903 38 H 0.069 0.931 39 H 0.063 0.937 40 H 0.085 0.915 41 H 0.067 0.933 42 H 0.105 0.895 43 H 0.086 0.914 44 H 0.417 0.583 45 H 0.189 0.811 46 H 0.110 0.890 47 H 0.396 0.604 48 H -0.276 1.276 49 H -0.301 1.301 50 H 0.152 0.848 51 H 0.123 0.877 52 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.652 -5.910 1.299 7.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.272 6.272 3 C 0.309 3.691 4 O -0.410 6.410 5 C 0.088 3.912 6 N -0.334 5.334 7 C 0.406 3.594 8 O -0.473 6.473 9 O -0.274 6.274 10 C 0.093 3.907 11 C -0.238 4.238 12 C -0.194 4.194 13 C -0.238 4.238 14 C -0.169 4.169 15 C 0.050 3.950 16 H 0.153 0.847 17 N -0.335 5.335 18 C 0.146 3.854 19 N -0.235 5.235 20 C -0.006 4.006 21 C -0.209 4.209 22 C -0.172 4.172 23 O -0.365 6.365 24 Si 0.681 3.319 25 C -0.068 4.068 26 C -0.063 4.063 27 F -0.121 7.121 28 C -0.165 4.165 29 H 0.148 0.852 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.270 0.730 33 H 0.081 0.919 34 H 0.105 0.895 35 H 0.078 0.922 36 H 0.092 0.908 37 H 0.116 0.884 38 H 0.089 0.911 39 H 0.082 0.918 40 H 0.104 0.896 41 H 0.086 0.914 42 H 0.123 0.877 43 H 0.104 0.896 44 H 0.255 0.745 45 H 0.205 0.795 46 H 0.127 0.873 47 H 0.246 0.754 48 H -0.203 1.203 49 H -0.229 1.229 50 H 0.169 0.831 51 H 0.141 0.859 52 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 3.211 -6.588 1.336 7.450 hybrid contribution -1.209 1.689 -1.109 2.355 sum 2.002 -4.899 0.228 5.297 Atomic orbital electron populations 1.23542 0.74924 1.05691 1.02397 1.86517 1.24807 1.32668 1.83207 1.24060 0.92079 0.81564 0.71370 1.90675 1.66965 1.37290 1.46091 1.20774 0.83569 0.90080 0.96738 1.44013 1.54743 1.31366 1.03325 1.18205 0.77448 0.80784 0.82914 1.90962 1.46209 1.40030 1.70084 1.86324 1.73634 1.43727 1.23704 1.22375 0.96183 0.98279 0.73846 1.22473 0.94696 1.02832 1.03774 1.21896 1.01763 0.94460 1.01328 1.22479 1.01199 0.97585 1.02525 1.23707 0.97958 0.93991 1.01215 1.22324 0.97592 0.85711 0.89369 0.84690 1.44508 1.12889 1.24744 1.51401 1.18514 0.88160 0.88854 0.89866 1.67314 1.02822 1.27093 1.26246 1.22724 0.92049 0.95991 0.89827 1.21006 0.98728 0.96676 1.04517 1.25034 0.90754 1.01717 0.99661 1.86487 1.75257 1.45033 1.29737 0.93858 0.75682 0.72534 0.89806 1.21443 0.89915 0.99453 0.95990 1.18165 0.90147 0.90108 1.07838 1.91476 1.63900 1.61848 1.94890 1.23909 0.98186 1.02858 0.91517 0.85169 0.92830 0.91312 0.73019 0.91942 0.89511 0.92199 0.90771 0.88420 0.91147 0.91798 0.89637 0.91419 0.87659 0.89554 0.74470 0.79487 0.87272 0.75401 1.20251 1.22852 0.83076 0.85872 0.87071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.03 10.56 113.37 1.20 1.23 16 2 O -0.36 -1.90 10.41 -51.43 -0.54 -2.43 16 3 C 0.47 3.25 6.59 71.24 0.47 3.72 16 4 O -0.52 -6.53 15.66 21.97 0.34 -6.19 16 5 C 0.18 0.11 1.00 3.38 0.00 0.11 16 6 N -0.67 0.58 5.02 -551.33 -2.77 -2.19 16 7 C 0.65 3.26 7.61 129.79 0.99 4.25 16 8 O -0.58 -6.26 10.42 19.80 0.21 -6.05 16 9 O -0.36 -1.21 9.94 -55.42 -0.55 -1.76 16 10 C 0.13 0.19 1.13 -10.79 -0.01 0.18 16 11 C -0.18 -0.50 8.37 71.98 0.60 0.10 16 12 C -0.14 0.50 8.85 71.98 0.64 1.14 16 13 C -0.18 -0.30 8.37 71.98 0.60 0.31 16 14 C -0.13 -0.15 6.55 31.12 0.20 0.06 16 15 C 0.16 -0.47 4.18 45.52 0.19 -0.28 16 16 H 0.14 -0.47 7.41 -2.39 -0.02 -0.49 16 17 N -0.70 0.85 5.51 -321.78 -1.77 -0.92 16 18 C 0.38 0.41 7.49 133.08 1.00 1.41 16 19 N -0.52 0.25 9.13 -193.03 -1.76 -1.51 16 20 C 0.15 -0.56 9.84 84.61 0.83 0.27 16 21 C -0.20 0.55 5.36 -19.77 -0.11 0.45 16 22 C -0.06 0.24 2.82 71.23 0.20 0.44 16 23 O -0.56 1.37 12.84 -148.98 -1.91 -0.54 16 24 Si 0.78 -4.64 29.83 68.60 2.05 -2.59 16 25 C -0.04 -0.01 9.82 22.48 0.22 0.21 16 26 C -0.04 -0.09 7.35 22.59 0.17 0.08 16 27 F -0.14 -0.67 16.65 44.97 0.75 0.07 16 28 C -0.13 0.59 7.16 31.12 0.22 0.82 16 29 H 0.13 -0.61 8.14 -2.39 -0.02 -0.63 16 30 H 0.05 0.19 8.13 -2.39 -0.02 0.17 16 31 H 0.07 0.04 8.13 -2.39 -0.02 0.02 16 32 H 0.43 -2.87 8.77 -92.71 -0.81 -3.69 16 33 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 34 H 0.09 -0.04 8.14 -2.39 -0.02 -0.06 16 35 H 0.06 0.52 5.88 -2.39 -0.01 0.51 16 36 H 0.07 -0.32 8.14 -2.38 -0.02 -0.34 16 37 H 0.10 -0.64 8.14 -2.39 -0.02 -0.65 16 38 H 0.07 -0.26 8.14 -2.39 -0.02 -0.28 16 39 H 0.06 0.45 5.88 -2.39 -0.01 0.43 16 40 H 0.08 -0.11 8.14 -2.39 -0.02 -0.13 16 41 H 0.07 0.02 8.14 -2.39 -0.02 0.00 16 42 H 0.11 0.32 7.32 -2.39 -0.02 0.30 16 43 H 0.09 0.36 7.19 -2.39 -0.02 0.34 16 44 H 0.42 -0.73 8.20 -92.71 -0.76 -1.49 16 45 H 0.19 -1.78 4.90 -2.91 -0.01 -1.80 16 46 H 0.11 -0.31 7.96 -2.39 -0.02 -0.33 16 47 H 0.40 -4.14 8.70 -74.06 -0.64 -4.78 16 48 H -0.28 0.56 7.11 99.48 0.71 1.27 16 49 H -0.30 -0.72 7.11 99.48 0.71 -0.01 16 50 H 0.15 -0.12 8.06 -2.91 -0.02 -0.14 16 51 H 0.12 -1.12 8.09 -2.38 -0.02 -1.14 16 52 H 0.11 -0.46 8.10 -2.39 -0.02 -0.48 16 Total: 0.00 -23.20 430.53 0.28 -22.92 By element: Atomic # 1 Polarization: -12.11 SS G_CDS: -1.17 Total: -13.28 kcal Atomic # 6 Polarization: 7.07 SS G_CDS: 7.41 Total: 14.48 kcal Atomic # 7 Polarization: 1.68 SS G_CDS: -6.30 Total: -4.63 kcal Atomic # 8 Polarization: -14.52 SS G_CDS: -2.45 Total: -16.97 kcal Atomic # 9 Polarization: -0.67 SS G_CDS: 0.75 Total: 0.07 kcal Atomic # 14 Polarization: -4.64 SS G_CDS: 2.05 Total: -2.59 kcal Total: -23.20 0.28 -22.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_13976898_17656566.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.098 kcal (2) G-P(sol) polarization free energy of solvation -23.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds