Wall clock time and date at job start Mon Mar 8 2021 07:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47076 * 2 1 4 4 C 1.52997 * 109.47061 * 239.99804 * 2 1 3 5 5 O 1.45203 * 109.47240 * 119.99695 * 2 1 3 6 6 C 1.34229 * 116.99579 * 59.99972 * 5 2 1 7 7 O 1.20819 * 120.00199 * 0.02562 * 6 5 2 8 8 C 1.50706 * 119.99505 * 179.97438 * 6 5 2 9 9 H 1.08992 * 109.47518 * 300.00344 * 8 6 5 10 10 C 1.53002 * 109.46783 * 60.00307 * 8 6 5 11 11 C 1.52997 * 109.46817 * 179.97438 * 10 8 6 12 12 C 1.53005 * 109.47452 * 300.00239 * 11 10 8 13 13 H 1.09002 * 109.46935 * 300.00125 * 12 11 10 14 14 C 1.53002 * 109.47197 * 180.02562 * 12 11 10 15 15 N 1.46504 * 109.46806 * 175.00000 * 14 12 11 16 16 C 1.38408 * 119.99752 * 179.97438 * 15 14 12 17 17 N 1.32492 * 119.21684 * 359.72779 * 16 15 14 18 18 C 1.32280 * 120.73841 * 179.71779 * 17 16 15 19 19 C 1.38599 * 119.19810 * 0.54777 * 18 17 16 20 20 C 1.50699 * 120.72481 * 179.70714 * 19 18 17 21 21 O 1.42895 * 109.47497 * 120.01934 * 20 19 18 22 22 Si 1.86303 * 109.46640 * 0.02562 * 20 19 18 23 23 C 1.38606 * 118.55828 * 359.72835 * 19 18 17 24 24 N 1.32285 * 119.19731 * 0.02562 * 23 19 18 25 25 C 1.52999 * 109.47159 * 59.99536 * 12 11 10 26 26 C 1.52997 * 109.47317 * 300.00546 * 25 12 11 27 27 H 1.09000 * 109.47115 * 300.00085 * 1 2 3 28 28 H 1.08998 * 109.47349 * 60.00296 * 1 2 3 29 29 H 1.08997 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.46973 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.46790 * 300.00046 * 3 2 1 32 32 H 1.09000 * 109.47218 * 59.99978 * 3 2 1 33 33 H 1.09001 * 109.47231 * 299.99975 * 4 2 1 34 34 H 1.09005 * 109.46960 * 60.00056 * 4 2 1 35 35 H 1.09003 * 109.47003 * 179.97438 * 4 2 1 36 36 H 1.08993 * 109.47662 * 299.99813 * 10 8 6 37 37 H 1.09002 * 109.47075 * 60.00319 * 10 8 6 38 38 H 1.09002 * 109.47153 * 60.00231 * 11 10 8 39 39 H 1.09001 * 109.47289 * 180.02562 * 11 10 8 40 40 H 1.09000 * 109.46791 * 294.99945 * 14 12 11 41 41 H 1.08998 * 109.47254 * 54.99840 * 14 12 11 42 42 H 0.96997 * 119.99996 * 359.97438 * 15 14 12 43 43 H 1.08005 * 120.39677 * 180.29571 * 18 17 16 44 44 H 1.08999 * 109.47072 * 240.02373 * 20 19 18 45 45 H 0.96705 * 113.99544 * 300.00672 * 21 20 19 46 46 H 1.48502 * 109.99806 * 180.02562 * 22 20 19 47 47 H 1.48500 * 110.00160 * 301.31574 * 22 20 19 48 48 H 1.07997 * 120.40742 * 179.97438 * 23 19 18 49 49 H 1.08996 * 109.46929 * 179.97438 * 25 12 11 50 50 H 1.09002 * 109.46716 * 60.00455 * 25 12 11 51 51 H 1.09002 * 109.47153 * 299.99641 * 26 25 12 52 52 H 1.09001 * 109.46832 * 179.97438 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6533 -1.9683 1.3379 7 8 0.9567 -2.5027 0.5079 8 6 2.1183 -2.7436 2.5437 9 1 3.2078 -2.7725 2.5592 10 6 1.6081 -2.0629 3.8154 11 6 2.0797 -2.8503 5.0396 12 6 1.5321 -4.2774 4.9701 13 1 0.4426 -4.2481 4.9544 14 6 2.0032 -5.0646 6.1946 15 7 1.3832 -6.3919 6.1899 16 6 1.6615 -7.2893 7.2062 17 7 2.4950 -6.9336 8.1727 18 6 2.7780 -7.7654 9.1616 19 6 2.1998 -9.0250 9.1720 20 6 2.5032 -10.0023 10.2783 21 8 1.2927 -10.3464 10.9552 22 14 3.6901 -9.2247 11.4855 23 6 1.3368 -9.3665 8.1426 24 7 1.0925 -8.4856 7.1863 25 6 2.0422 -4.9580 3.6983 26 6 1.5707 -4.1706 2.4742 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.1299 1.4425 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 1.6766 -1.7490 -1.2492 34 1 1.6766 -0.2074 -2.1392 35 1 3.1300 -0.7209 -1.2494 36 1 1.9978 -1.0462 3.8648 37 1 0.5186 -2.0341 3.8000 38 1 3.1692 -2.8796 5.0552 39 1 1.7158 -2.3657 5.9456 40 1 3.0876 -5.1699 6.1636 41 1 1.7156 -4.5324 7.1013 42 1 0.7776 -6.6418 5.4745 43 1 3.4546 -7.4680 9.9492 44 1 2.9515 -10.9015 9.8559 45 1 0.8387 -9.5928 11.3566 46 1 3.9978 -10.1786 12.5812 47 1 4.9410 -8.8332 10.7874 48 1 0.8700 -10.3401 8.1209 49 1 1.6526 -5.9747 3.6491 50 1 3.1318 -4.9872 3.7139 51 1 0.4812 -4.1413 2.4585 52 1 1.9346 -4.6553 1.5682 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14037212_12175864.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:20:20 Heat of formation + Delta-G solvation = -71.897559 kcal Electronic energy + Delta-G solvation = -30904.157935 eV Core-core repulsion = 26677.163303 eV Total energy + Delta-G solvation = -4226.994633 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 350.204 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.12197 -42.02660 -39.94832 -38.26084 -37.89830 -36.61458 -35.11190 -34.72871 -33.44171 -31.86654 -31.58429 -28.44069 -28.34734 -27.86380 -26.18898 -25.75396 -24.25704 -23.67906 -22.89100 -22.06981 -20.89913 -20.49634 -19.36955 -18.66029 -18.24275 -17.99687 -17.58702 -17.14217 -16.65517 -16.29966 -16.13733 -16.00109 -15.66875 -15.52756 -15.50339 -15.16018 -15.05473 -14.81403 -14.63913 -14.54183 -14.07029 -13.93335 -13.63209 -13.42680 -13.29571 -13.16048 -13.15024 -13.00530 -12.96580 -12.90524 -12.55141 -12.31585 -12.21757 -12.11835 -12.07556 -11.90512 -11.76774 -11.66254 -11.47800 -11.41540 -11.30356 -11.05199 -10.86501 -10.53050 -10.02895 -9.07017 -4.97665 0.06786 0.14821 1.17378 1.33943 1.65212 1.66919 1.86322 2.00306 2.81522 3.16446 3.41975 3.54621 3.61053 3.64139 3.67620 3.68089 3.73327 3.74550 3.82690 3.85218 3.91633 4.03203 4.14243 4.27201 4.28669 4.39119 4.46364 4.49581 4.53219 4.54027 4.56791 4.70215 4.71483 4.73907 4.77179 4.78273 4.82731 4.83299 4.88803 4.95298 5.07923 5.08036 5.10518 5.18032 5.19198 5.21833 5.24225 5.25157 5.34655 5.47709 5.56001 5.77885 6.04833 6.40930 6.78876 6.79655 7.28216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.107 3.893 3 C -0.138 4.138 4 C -0.181 4.181 5 O -0.354 6.354 6 C 0.463 3.537 7 O -0.529 6.529 8 C -0.078 4.078 9 H 0.122 0.878 10 C -0.104 4.104 11 C -0.103 4.103 12 C -0.094 4.094 13 H 0.080 0.920 14 C 0.147 3.853 15 N -0.692 5.692 16 C 0.550 3.450 17 N -0.576 5.576 18 C 0.194 3.806 19 C -0.289 4.289 20 C -0.048 4.048 21 O -0.555 6.555 22 Si 0.770 3.230 23 C 0.212 3.788 24 N -0.592 5.592 25 C -0.108 4.108 26 C -0.098 4.098 27 H 0.065 0.935 28 H 0.084 0.916 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.093 0.907 32 H 0.070 0.930 33 H 0.061 0.939 34 H 0.085 0.915 35 H 0.064 0.936 36 H 0.083 0.917 37 H 0.063 0.937 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.066 0.934 41 H 0.069 0.931 42 H 0.417 0.583 43 H 0.188 0.812 44 H 0.112 0.888 45 H 0.395 0.605 46 H -0.296 1.296 47 H -0.282 1.282 48 H 0.180 0.820 49 H 0.067 0.933 50 H 0.073 0.927 51 H 0.062 0.938 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.240 4.871 2.822 5.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.071 3.929 3 C -0.195 4.195 4 C -0.238 4.238 5 O -0.271 6.271 6 C 0.308 3.692 7 O -0.418 6.418 8 C -0.097 4.097 9 H 0.140 0.860 10 C -0.141 4.141 11 C -0.141 4.141 12 C -0.112 4.112 13 H 0.098 0.902 14 C 0.023 3.977 15 N -0.329 5.329 16 C 0.193 3.807 17 N -0.299 5.299 18 C 0.027 3.973 19 C -0.297 4.297 20 C -0.160 4.160 21 O -0.363 6.363 22 Si 0.676 3.324 23 C 0.044 3.956 24 N -0.315 5.315 25 C -0.145 4.145 26 C -0.136 4.136 27 H 0.084 0.916 28 H 0.103 0.897 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.111 0.889 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.103 0.897 35 H 0.083 0.917 36 H 0.102 0.898 37 H 0.082 0.918 38 H 0.099 0.901 39 H 0.102 0.898 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.255 0.745 43 H 0.205 0.795 44 H 0.130 0.870 45 H 0.245 0.755 46 H -0.224 1.224 47 H -0.209 1.209 48 H 0.197 0.803 49 H 0.085 0.915 50 H 0.091 0.909 51 H 0.081 0.919 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.851 5.009 1.937 5.680 hybrid contribution -0.325 -1.344 -0.622 1.517 sum 1.525 3.665 1.315 4.182 Atomic orbital electron populations 1.22449 0.94088 1.03462 1.03681 1.22419 0.94477 0.93341 0.82640 1.21871 1.02402 0.91136 1.04081 1.22462 1.01791 1.02013 0.97530 1.86556 1.69652 1.25379 1.45510 1.24211 0.76711 0.80678 0.87632 1.90585 1.36391 1.70424 1.44441 1.21251 1.03670 0.94273 0.90482 0.86028 1.21475 1.01154 0.99758 0.91731 1.21459 1.01954 0.92940 0.97743 1.21402 1.01363 0.95365 0.93118 0.90156 1.21392 0.97559 0.80305 0.98420 1.44311 1.50609 1.13673 1.24292 1.19665 0.86971 0.86396 0.87623 1.67972 1.19438 1.37471 1.05005 1.23190 0.92647 0.88004 0.93464 1.21760 1.06376 0.98941 1.02637 1.24818 0.94785 1.00312 0.96053 1.86475 1.37915 1.38930 1.72943 0.93921 0.77052 0.84392 0.77040 1.23109 0.89436 0.97424 0.85613 1.68004 1.29764 1.03461 1.30241 1.21564 1.01641 0.98585 0.92749 1.21361 1.01045 0.92410 0.98751 0.91621 0.89705 0.92029 0.91212 0.88855 0.91087 0.92013 0.89661 0.91741 0.89796 0.91827 0.90127 0.89795 0.91574 0.91256 0.74514 0.79545 0.87027 0.75539 1.22417 1.20869 0.80294 0.91462 0.90851 0.91915 0.92023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.42 8.37 71.98 0.60 0.18 16 2 C 0.11 0.22 1.13 -10.79 -0.01 0.21 16 3 C -0.14 0.33 8.85 71.98 0.64 0.97 16 4 C -0.18 -0.47 8.37 71.98 0.60 0.13 16 5 O -0.35 -1.33 9.79 -51.40 -0.50 -1.83 16 6 C 0.46 1.98 6.56 71.24 0.47 2.45 16 7 O -0.53 -5.09 11.48 21.99 0.25 -4.84 16 8 C -0.08 0.14 2.63 -11.54 -0.03 0.11 16 9 H 0.12 -0.54 8.14 -2.39 -0.02 -0.56 16 10 C -0.10 0.48 5.14 30.59 0.16 0.64 16 11 C -0.10 0.74 5.20 30.60 0.16 0.90 16 12 C -0.09 0.55 2.22 -10.79 -0.02 0.52 16 13 H 0.08 -0.41 8.14 -2.39 -0.02 -0.43 16 14 C 0.15 -0.46 5.04 86.38 0.44 -0.03 16 15 N -0.69 -0.40 5.43 -351.03 -1.91 -2.30 16 16 C 0.55 2.82 8.42 261.49 2.20 5.03 16 17 N -0.58 -2.38 9.59 -197.99 -1.90 -4.27 16 18 C 0.19 -0.01 9.92 84.71 0.84 0.83 16 19 C -0.29 0.14 5.40 -19.69 -0.11 0.03 16 20 C -0.05 0.14 2.85 71.24 0.20 0.34 16 21 O -0.55 1.17 12.79 -148.98 -1.90 -0.73 16 22 Si 0.77 -3.45 29.87 68.60 2.05 -1.40 16 23 C 0.21 0.52 10.92 84.71 0.93 1.45 16 24 N -0.59 -3.63 10.46 -197.98 -2.07 -5.70 16 25 C -0.11 0.48 5.08 30.59 0.16 0.63 16 26 C -0.10 0.12 4.49 30.59 0.14 0.26 16 27 H 0.06 0.09 8.14 -2.39 -0.02 0.07 16 28 H 0.08 -0.04 8.14 -2.39 -0.02 -0.06 16 29 H 0.06 0.44 5.89 -2.39 -0.01 0.42 16 30 H 0.07 -0.18 8.14 -2.39 -0.02 -0.20 16 31 H 0.09 -0.48 8.14 -2.39 -0.02 -0.50 16 32 H 0.07 -0.20 8.14 -2.39 -0.02 -0.22 16 33 H 0.06 0.45 5.89 -2.39 -0.01 0.44 16 34 H 0.08 -0.03 8.14 -2.38 -0.02 -0.05 16 35 H 0.06 0.12 8.14 -2.39 -0.02 0.10 16 36 H 0.08 -0.41 8.11 -2.39 -0.02 -0.43 16 37 H 0.06 -0.20 8.14 -2.39 -0.02 -0.22 16 38 H 0.08 -0.66 8.14 -2.39 -0.02 -0.68 16 39 H 0.08 -0.69 8.14 -2.39 -0.02 -0.71 16 40 H 0.07 -0.13 8.14 -2.39 -0.02 -0.15 16 41 H 0.07 -0.17 8.14 -2.39 -0.02 -0.19 16 42 H 0.42 -0.36 7.77 -92.71 -0.72 -1.08 16 43 H 0.19 -1.07 5.04 -2.91 -0.01 -1.08 16 44 H 0.11 -0.25 7.96 -2.39 -0.02 -0.26 16 45 H 0.39 -3.81 8.70 -74.05 -0.64 -4.45 16 46 H -0.30 -0.97 7.11 99.48 0.71 -0.27 16 47 H -0.28 -0.01 7.11 99.48 0.71 0.70 16 48 H 0.18 -0.14 8.06 -2.91 -0.02 -0.16 16 49 H 0.07 -0.24 7.18 -2.39 -0.02 -0.26 16 50 H 0.07 -0.35 8.14 -2.39 -0.02 -0.37 16 51 H 0.06 0.07 8.10 -2.39 -0.02 0.05 16 52 H 0.06 0.08 8.10 -2.39 -0.02 0.07 16 Total: 0.00 -17.86 407.15 0.97 -16.89 By element: Atomic # 1 Polarization: -10.08 SS G_CDS: -0.40 Total: -10.48 kcal Atomic # 6 Polarization: 7.31 SS G_CDS: 7.35 Total: 14.67 kcal Atomic # 7 Polarization: -6.40 SS G_CDS: -5.88 Total: -12.27 kcal Atomic # 8 Polarization: -5.25 SS G_CDS: -2.16 Total: -7.40 kcal Atomic # 14 Polarization: -3.45 SS G_CDS: 2.05 Total: -1.40 kcal Total: -17.86 0.97 -16.89 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14037212_12175864.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.003 kcal (2) G-P(sol) polarization free energy of solvation -17.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds