Wall clock time and date at job start Mon Mar 8 2021 07:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47276 * 2 1 4 4 C 1.53001 * 109.47217 * 239.99345 * 2 1 3 5 5 O 1.45210 * 109.46722 * 119.99568 * 2 1 3 6 6 C 1.34219 * 117.00002 * 60.00009 * 5 2 1 7 7 O 1.20829 * 120.00231 * 359.97438 * 6 5 2 8 8 C 1.50700 * 120.00176 * 180.02562 * 6 5 2 9 9 H 1.08995 * 109.47238 * 59.99445 * 8 6 5 10 10 C 1.52995 * 109.47482 * 179.97438 * 8 6 5 11 11 C 1.52997 * 109.47159 * 179.97438 * 10 8 6 12 12 C 1.53003 * 109.47453 * 300.00369 * 11 10 8 13 13 H 1.08996 * 109.47012 * 299.99490 * 12 11 10 14 14 C 1.53004 * 109.47172 * 179.97438 * 12 11 10 15 15 N 1.46500 * 109.47087 * 174.99851 * 14 12 11 16 16 C 1.38998 * 119.99748 * 180.02562 * 15 14 12 17 17 N 1.32394 * 119.70418 * 180.02562 * 16 15 14 18 18 C 1.31974 * 121.62532 * 180.02562 * 17 16 15 19 19 C 1.38023 * 120.85239 * 359.97438 * 18 17 16 20 20 C 1.50709 * 120.33181 * 180.02562 * 19 18 17 21 21 O 1.42897 * 109.46912 * 244.98160 * 20 19 18 22 22 Si 1.86295 * 109.47009 * 4.97946 * 20 19 18 23 23 C 1.38881 * 119.33177 * 0.02562 * 19 18 17 24 24 C 1.38293 * 118.50529 * 0.25125 * 23 19 18 25 25 C 1.52995 * 109.47239 * 59.99680 * 12 11 10 26 26 C 1.52997 * 109.47159 * 300.00500 * 25 12 11 27 27 H 1.08996 * 109.47519 * 300.00514 * 1 2 3 28 28 H 1.09004 * 109.47026 * 60.00622 * 1 2 3 29 29 H 1.09000 * 109.47727 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47107 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.46585 * 299.99648 * 3 2 1 32 32 H 1.08996 * 109.47266 * 59.99331 * 3 2 1 33 33 H 1.09000 * 109.47008 * 300.00140 * 4 2 1 34 34 H 1.08996 * 109.46869 * 60.00678 * 4 2 1 35 35 H 1.09003 * 109.46589 * 180.02562 * 4 2 1 36 36 H 1.09003 * 109.46869 * 60.00024 * 10 8 6 37 37 H 1.08997 * 109.47206 * 299.99881 * 10 8 6 38 38 H 1.09005 * 109.47238 * 179.97438 * 11 10 8 39 39 H 1.09003 * 109.46845 * 60.00457 * 11 10 8 40 40 H 1.09004 * 109.46903 * 54.99405 * 14 12 11 41 41 H 1.09001 * 109.46620 * 294.99947 * 14 12 11 42 42 H 0.96996 * 120.00050 * 0.02562 * 15 14 12 43 43 H 1.08002 * 119.57490 * 179.97438 * 18 17 16 44 44 H 1.08993 * 109.46581 * 124.97930 * 20 19 18 45 45 H 0.96702 * 114.00702 * 59.99987 * 21 20 19 46 46 H 1.48497 * 109.99920 * 180.02562 * 22 20 19 47 47 H 1.48502 * 110.00152 * 301.31538 * 22 20 19 48 48 H 1.08002 * 120.74409 * 179.97438 * 23 19 18 49 49 H 1.08004 * 120.45379 * 179.72761 * 24 23 19 50 50 H 1.09003 * 109.46869 * 60.00028 * 25 12 11 51 51 H 1.08997 * 109.47206 * 180.02562 * 25 12 11 52 52 H 1.09003 * 109.46845 * 299.99543 * 26 25 12 53 53 H 1.09005 * 109.47238 * 180.02562 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2492 5 8 2.0139 -0.6845 1.1857 6 6 1.6532 -1.9683 1.3381 7 8 0.9558 -2.5024 0.5085 8 6 2.1171 -2.7432 2.5445 9 1 1.7529 -2.2581 3.4500 10 6 1.5696 -4.1702 2.4755 11 6 2.0411 -4.9571 3.7000 12 6 3.5704 -4.9980 3.7221 13 1 3.9340 -5.4833 2.8164 14 6 4.0419 -5.7844 4.9470 15 7 5.4994 -5.9261 4.9050 16 6 6.1608 -6.6088 5.9192 17 7 7.4782 -6.7329 5.8757 18 6 8.1444 -7.3736 6.8177 19 6 7.4854 -7.9405 7.8898 20 6 8.2580 -8.6691 8.9592 21 8 7.8972 -10.0517 8.9491 22 14 10.0838 -8.5012 8.6297 23 6 6.1033 -7.8329 7.9730 24 6 5.4319 -7.1608 6.9680 25 6 4.1179 -3.5711 3.7911 26 6 3.6464 -2.7842 2.5666 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9562 -0.8901 32 1 1.6766 1.9564 0.8899 33 1 1.6766 -1.7490 -1.2490 34 1 1.6768 -0.2076 -2.1391 35 1 3.1300 -0.7217 -1.2488 36 1 1.9335 -4.6556 1.5699 37 1 0.4802 -4.1410 2.4594 38 1 1.6507 -5.9736 3.6511 39 1 1.6775 -4.4718 4.6057 40 1 3.5806 -6.7720 4.9443 41 1 3.7545 -5.2516 5.8534 42 1 6.0029 -5.5434 4.1695 43 1 9.2191 -7.4553 6.7489 44 1 8.0235 -8.2394 9.9331 45 1 8.0783 -10.4994 8.1113 46 1 10.8568 -9.2159 9.6770 47 1 10.4113 -9.0546 7.2911 48 1 5.5645 -8.2682 8.8017 49 1 4.3568 -7.0621 6.9989 50 1 3.7543 -3.0858 4.6969 51 1 5.2074 -3.6002 3.8064 52 1 4.0100 -3.2694 1.6608 53 1 4.0368 -1.7676 2.6155 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14037212_13915762.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:20:24 Heat of formation + Delta-G solvation = -89.209062 kcal Electronic energy + Delta-G solvation = -30781.219252 eV Core-core repulsion = 26618.899847 eV Total energy + Delta-G solvation = -4162.319405 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 349.209 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.07621 -41.37403 -39.90410 -38.27766 -37.89802 -36.50925 -35.11362 -33.59140 -32.94533 -31.81521 -30.97547 -28.44332 -28.35232 -27.73063 -25.92904 -24.90552 -24.06381 -23.65149 -22.53444 -21.83364 -20.86850 -20.49607 -18.66561 -18.55708 -18.24332 -17.57732 -17.52826 -17.16884 -16.43913 -16.28364 -16.13283 -15.82502 -15.61585 -15.47932 -15.38234 -15.06713 -14.92560 -14.74326 -14.60255 -14.34294 -14.00609 -13.85594 -13.60642 -13.45228 -13.34507 -13.23699 -13.16024 -12.99677 -12.93131 -12.90503 -12.54508 -12.44188 -12.33325 -12.10878 -12.06948 -12.03159 -11.64320 -11.45884 -11.38733 -11.21446 -11.00298 -10.86456 -10.71764 -10.52773 -10.37013 -8.65734 -4.90238 0.26295 0.43609 1.17279 1.35082 1.60993 1.67354 1.97161 2.17055 2.86160 3.41553 3.47590 3.59670 3.64845 3.66008 3.67728 3.74594 3.81269 3.84286 3.91038 3.99264 4.03466 4.11513 4.20923 4.27363 4.38583 4.39409 4.47305 4.50664 4.52802 4.53747 4.62223 4.68675 4.69843 4.70824 4.76858 4.80142 4.82232 4.84017 4.85951 4.98285 5.03720 5.07571 5.08248 5.12701 5.18256 5.18926 5.22943 5.23635 5.32202 5.35079 5.47158 5.56050 5.57744 6.06588 6.51172 6.57558 6.78803 7.18295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.107 3.893 3 C -0.138 4.138 4 C -0.180 4.180 5 O -0.355 6.355 6 C 0.462 3.538 7 O -0.528 6.528 8 C -0.077 4.077 9 H 0.124 0.876 10 C -0.099 4.099 11 C -0.104 4.104 12 C -0.093 4.093 13 H 0.075 0.925 14 C 0.133 3.867 15 N -0.719 5.719 16 C 0.395 3.605 17 N -0.567 5.567 18 C 0.144 3.856 19 C -0.236 4.236 20 C -0.062 4.062 21 O -0.550 6.550 22 Si 0.756 3.244 23 C -0.012 4.012 24 C -0.241 4.241 25 C -0.107 4.107 26 C -0.105 4.105 27 H 0.064 0.936 28 H 0.084 0.916 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.093 0.907 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.084 0.916 35 H 0.063 0.937 36 H 0.059 0.941 37 H 0.066 0.934 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.069 0.931 41 H 0.076 0.924 42 H 0.405 0.595 43 H 0.164 0.836 44 H 0.126 0.874 45 H 0.384 0.616 46 H -0.300 1.300 47 H -0.285 1.285 48 H 0.146 0.854 49 H 0.150 0.850 50 H 0.078 0.922 51 H 0.070 0.930 52 H 0.060 0.940 53 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.120 4.134 1.248 4.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.071 3.929 3 C -0.195 4.195 4 C -0.237 4.237 5 O -0.272 6.272 6 C 0.307 3.693 7 O -0.418 6.418 8 C -0.096 4.096 9 H 0.142 0.858 10 C -0.137 4.137 11 C -0.142 4.142 12 C -0.112 4.112 13 H 0.093 0.907 14 C 0.009 3.991 15 N -0.351 5.351 16 C 0.158 3.842 17 N -0.285 5.285 18 C -0.013 4.013 19 C -0.241 4.241 20 C -0.172 4.172 21 O -0.358 6.358 22 Si 0.662 3.338 23 C -0.037 4.037 24 C -0.266 4.266 25 C -0.145 4.145 26 C -0.143 4.143 27 H 0.083 0.917 28 H 0.103 0.897 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.112 0.888 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.103 0.897 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.097 0.903 39 H 0.102 0.898 40 H 0.087 0.913 41 H 0.094 0.906 42 H 0.242 0.758 43 H 0.181 0.819 44 H 0.144 0.856 45 H 0.233 0.767 46 H -0.228 1.228 47 H -0.212 1.212 48 H 0.163 0.837 49 H 0.168 0.832 50 H 0.097 0.903 51 H 0.089 0.911 52 H 0.079 0.921 53 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.564 4.139 0.713 4.238 hybrid contribution -0.853 -1.298 -0.553 1.648 sum -1.417 2.842 0.160 3.179 Atomic orbital electron populations 1.22456 0.94081 1.03520 1.03680 1.22418 0.94478 0.93314 0.82668 1.21873 1.02400 0.91200 1.04051 1.22450 1.01762 1.02000 0.97475 1.86557 1.69693 1.25434 1.45535 1.24243 0.76585 0.80618 0.87869 1.90587 1.36419 1.70435 1.44353 1.21253 0.98616 0.95555 0.94172 0.85842 1.21372 1.00769 0.92236 0.99287 1.21472 0.93615 1.01139 0.97960 1.21345 0.96301 0.95830 0.97684 0.90665 1.21558 0.78028 1.00416 0.99096 1.44637 1.07055 1.58921 1.24523 1.18657 0.88224 0.89095 0.88193 1.67157 1.08118 1.22881 1.30319 1.22467 0.99724 0.90919 0.88180 1.20939 0.95792 1.07287 1.00082 1.24890 1.09496 0.81790 1.01068 1.86562 1.85895 1.22172 1.41134 0.94206 0.72794 0.90463 0.76313 1.21409 0.93329 0.92075 0.96935 1.21652 1.01890 1.06415 0.96646 1.21563 1.00898 0.94216 0.97789 1.21473 0.91288 1.01949 0.99545 0.91680 0.89669 0.91931 0.91220 0.88836 0.91170 0.91985 0.89680 0.91771 0.92258 0.91512 0.90264 0.89847 0.91270 0.90610 0.75840 0.81926 0.85640 0.76681 1.22850 1.21156 0.83665 0.83247 0.90324 0.91105 0.92116 0.90356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.39 8.37 71.98 0.60 0.21 16 2 C 0.11 0.21 1.13 -10.79 -0.01 0.20 16 3 C -0.14 0.33 8.85 71.98 0.64 0.97 16 4 C -0.18 -0.42 8.37 71.98 0.60 0.18 16 5 O -0.35 -1.30 9.79 -51.31 -0.50 -1.81 16 6 C 0.46 1.78 6.56 71.24 0.47 2.25 16 7 O -0.53 -4.78 11.48 21.96 0.25 -4.52 16 8 C -0.08 0.20 2.63 -11.54 -0.03 0.17 16 9 H 0.12 -0.69 8.14 -2.39 -0.02 -0.71 16 10 C -0.10 0.28 4.49 30.59 0.14 0.42 16 11 C -0.10 0.78 5.20 30.59 0.16 0.94 16 12 C -0.09 0.69 2.23 -10.79 -0.02 0.67 16 13 H 0.07 -0.43 8.14 -2.39 -0.02 -0.45 16 14 C 0.13 -0.89 4.28 86.38 0.37 -0.52 16 15 N -0.72 1.48 5.46 -345.06 -1.88 -0.40 16 16 C 0.39 1.01 7.65 133.07 1.02 2.03 16 17 N -0.57 -3.12 10.39 -193.26 -2.01 -5.13 16 18 C 0.14 0.37 9.84 84.62 0.83 1.21 16 19 C -0.24 -0.21 5.36 -19.76 -0.11 -0.32 16 20 C -0.06 0.04 2.82 71.24 0.20 0.24 16 21 O -0.55 -1.39 12.84 -148.98 -1.91 -3.31 16 22 Si 0.76 -1.01 29.91 68.60 2.05 1.04 16 23 C -0.01 -0.01 9.83 22.44 0.22 0.22 16 24 C -0.24 -0.04 9.33 22.50 0.21 0.17 16 25 C -0.11 0.76 5.07 30.59 0.16 0.92 16 26 C -0.10 0.46 5.13 30.59 0.16 0.62 16 27 H 0.06 0.09 8.14 -2.39 -0.02 0.07 16 28 H 0.08 -0.06 8.14 -2.39 -0.02 -0.08 16 29 H 0.06 0.42 5.89 -2.39 -0.01 0.41 16 30 H 0.07 -0.18 8.14 -2.39 -0.02 -0.20 16 31 H 0.09 -0.48 8.14 -2.39 -0.02 -0.50 16 32 H 0.07 -0.18 8.14 -2.39 -0.02 -0.20 16 33 H 0.06 0.43 5.89 -2.39 -0.01 0.42 16 34 H 0.08 -0.05 8.14 -2.39 -0.02 -0.06 16 35 H 0.06 0.10 8.14 -2.39 -0.02 0.09 16 36 H 0.06 0.01 8.10 -2.39 -0.02 -0.01 16 37 H 0.07 -0.06 8.10 -2.39 -0.02 -0.08 16 38 H 0.08 -0.62 8.14 -2.38 -0.02 -0.64 16 39 H 0.08 -0.79 8.14 -2.39 -0.02 -0.81 16 40 H 0.07 -0.48 7.92 -2.38 -0.02 -0.50 16 41 H 0.08 -0.61 7.94 -2.39 -0.02 -0.62 16 42 H 0.41 -0.91 7.78 -92.71 -0.72 -1.63 16 43 H 0.16 -0.13 4.85 -2.91 -0.01 -0.14 16 44 H 0.13 -0.33 7.96 -2.39 -0.02 -0.35 16 45 H 0.38 -0.94 8.70 -74.06 -0.64 -1.58 16 46 H -0.30 -1.83 7.11 99.48 0.71 -1.13 16 47 H -0.28 -0.80 7.01 99.48 0.70 -0.11 16 48 H 0.15 -0.32 8.06 -2.91 -0.02 -0.34 16 49 H 0.15 -0.61 6.71 -2.91 -0.02 -0.63 16 50 H 0.08 -0.63 8.14 -2.39 -0.02 -0.65 16 51 H 0.07 -0.45 7.18 -2.39 -0.02 -0.47 16 52 H 0.06 -0.15 8.14 -2.39 -0.02 -0.17 16 53 H 0.08 -0.30 8.11 -2.38 -0.02 -0.32 16 Total: 0.00 -16.14 410.17 1.16 -14.98 By element: Atomic # 1 Polarization: -10.96 SS G_CDS: -0.43 Total: -11.39 kcal Atomic # 6 Polarization: 4.94 SS G_CDS: 5.60 Total: 10.54 kcal Atomic # 7 Polarization: -1.64 SS G_CDS: -3.89 Total: -5.53 kcal Atomic # 8 Polarization: -7.47 SS G_CDS: -2.16 Total: -9.64 kcal Atomic # 14 Polarization: -1.01 SS G_CDS: 2.05 Total: 1.04 kcal Total: -16.14 1.16 -14.98 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14037212_13915762.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.232 kcal (2) G-P(sol) polarization free energy of solvation -16.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds