Wall clock time and date at job start Mon Mar 8 2021 07:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46886 * 2 1 4 4 C 1.52997 * 109.47282 * 239.99639 * 2 1 3 5 5 O 1.45198 * 109.46931 * 119.99526 * 2 1 3 6 6 C 1.34225 * 117.00275 * 60.00255 * 5 2 1 7 7 O 1.20831 * 119.99587 * 359.97438 * 6 5 2 8 8 C 1.50696 * 120.00468 * 180.02562 * 6 5 2 9 9 H 1.08996 * 109.47390 * 60.00021 * 8 6 5 10 10 C 1.52997 * 109.47242 * 180.02562 * 8 6 5 11 11 C 1.53006 * 109.47127 * 180.02562 * 10 8 6 12 12 C 1.52999 * 109.46626 * 299.99539 * 11 10 8 13 13 H 1.08993 * 109.47839 * 299.99931 * 12 11 10 14 14 C 1.53006 * 109.47000 * 180.02562 * 12 11 10 15 15 N 1.46501 * 109.47428 * 175.00339 * 14 12 11 16 16 C 1.38607 * 120.00103 * 180.02562 * 15 14 12 17 17 N 1.29685 * 124.94806 * 0.02562 * 16 15 14 18 18 C 1.32119 * 116.86697 * 179.97438 * 17 16 15 19 19 C 1.33332 * 114.57860 * 359.97438 * 18 17 16 20 20 C 1.50694 * 125.95122 * 179.97438 * 19 18 17 21 21 O 1.42897 * 109.47616 * 300.00291 * 20 19 18 22 22 Si 1.86303 * 109.46939 * 180.02562 * 20 19 18 23 23 S 1.70964 * 124.94982 * 179.71849 * 16 15 14 24 24 C 1.52997 * 109.46991 * 60.00378 * 12 11 10 25 25 C 1.52996 * 109.47131 * 299.99311 * 24 12 11 26 26 H 1.08995 * 109.47441 * 300.00275 * 1 2 3 27 27 H 1.09006 * 109.46468 * 60.00516 * 1 2 3 28 28 H 1.08995 * 109.46829 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46855 * 179.97438 * 3 2 1 30 30 H 1.09006 * 109.47145 * 299.99069 * 3 2 1 31 31 H 1.08995 * 109.47305 * 59.99642 * 3 2 1 32 32 H 1.08995 * 109.47467 * 299.99950 * 4 2 1 33 33 H 1.08996 * 109.47244 * 59.99977 * 4 2 1 34 34 H 1.09003 * 109.47209 * 180.02562 * 4 2 1 35 35 H 1.09001 * 109.47502 * 60.00161 * 10 8 6 36 36 H 1.09001 * 109.47289 * 299.99957 * 10 8 6 37 37 H 1.08993 * 109.46955 * 60.00011 * 11 10 8 38 38 H 1.09000 * 109.47050 * 179.97438 * 11 10 8 39 39 H 1.09001 * 109.47164 * 295.00510 * 14 12 11 40 40 H 1.08998 * 109.46741 * 54.99859 * 14 12 11 41 41 H 0.97003 * 119.99355 * 0.02562 * 15 14 12 42 42 H 1.07996 * 122.71548 * 179.97438 * 18 17 16 43 43 H 1.09000 * 109.47500 * 60.00656 * 20 19 18 44 44 H 0.96706 * 114.00166 * 299.99964 * 21 20 19 45 45 H 1.48494 * 110.00019 * 58.68374 * 22 20 19 46 46 H 1.48504 * 110.00104 * 180.02562 * 22 20 19 47 47 H 1.09001 * 109.47289 * 179.97438 * 24 12 11 48 48 H 1.09000 * 109.47611 * 59.99933 * 24 12 11 49 49 H 1.08996 * 109.47452 * 300.00000 * 25 24 12 50 50 H 1.09000 * 109.47054 * 180.02562 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6534 -1.9683 1.3380 7 8 0.9560 -2.5024 0.5084 8 6 2.1173 -2.7432 2.5444 9 1 1.7530 -2.2582 3.4499 10 6 1.5709 -4.1706 2.4747 11 6 2.0414 -4.9572 3.6998 12 6 3.5707 -4.9971 3.7237 13 1 3.9357 -5.4821 2.8184 14 6 4.0413 -5.7842 4.9484 15 7 5.4990 -5.9248 4.9081 16 6 6.1578 -6.6060 5.9196 17 7 5.5812 -7.1554 6.9432 18 6 6.3653 -7.7665 7.8134 19 6 7.6632 -7.7319 7.5102 20 6 8.7775 -8.3434 8.3197 21 8 8.7938 -7.7607 9.6244 22 14 10.4070 -8.0214 7.4760 23 16 7.8481 -6.8509 5.9959 24 6 4.1171 -3.5697 3.7933 25 6 3.6466 -2.7832 2.5683 26 1 -0.3634 0.5138 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3633 -1.0276 0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8901 31 1 1.6766 1.9564 0.8899 32 1 1.6768 -1.7489 -1.2492 33 1 1.6768 -0.2076 -2.1392 34 1 3.1301 -0.7217 -1.2489 35 1 1.9356 -4.6555 1.5691 36 1 0.4814 -4.1422 2.4581 37 1 1.6764 -4.4722 4.6051 38 1 1.6518 -5.9739 3.6504 39 1 3.7525 -5.2525 5.8550 40 1 3.5807 -6.7721 4.9444 41 1 6.0030 -5.5411 4.1735 42 1 5.9857 -8.2547 8.6987 43 1 8.6178 -9.4184 8.4039 44 1 8.9321 -6.8036 9.6260 45 1 10.6217 -6.5596 7.3270 46 1 11.5141 -8.6200 8.2642 47 1 5.2066 -3.5981 3.8108 48 1 3.7522 -3.0847 4.6987 49 1 4.0116 -3.2681 1.6629 50 1 4.0362 -1.7664 2.6177 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_14037212_15704118.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:20:29 Heat of formation + Delta-G solvation = -87.858342 kcal Electronic energy + Delta-G solvation = -29280.678533 eV Core-core repulsion = 25207.569947 eV Total energy + Delta-G solvation = -4073.108587 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 355.165 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.01239 -40.75675 -39.95676 -38.19394 -37.84503 -36.55090 -35.06320 -33.06614 -31.96703 -31.09642 -28.38580 -28.37591 -27.98602 -26.32877 -24.79094 -23.95180 -23.80253 -22.22828 -21.10368 -20.67610 -20.43687 -19.70278 -18.22976 -18.15813 -17.54895 -17.19092 -17.03221 -16.54741 -16.19826 -16.17109 -15.76080 -15.72151 -15.48400 -15.25413 -15.03737 -14.95718 -14.82901 -14.60649 -14.00623 -13.84964 -13.77184 -13.49337 -13.42593 -13.20331 -13.08999 -12.93079 -12.89067 -12.87277 -12.54247 -12.35623 -12.34003 -12.28437 -12.13245 -11.99958 -11.78121 -11.58648 -11.36704 -11.35083 -11.13753 -10.87391 -10.80464 -10.23390 -10.15790 -8.71246 -5.04964 0.00196 0.06475 0.71941 1.25674 1.26255 1.56753 1.67473 1.91491 2.06667 2.14563 3.32020 3.35736 3.42489 3.48733 3.65729 3.71572 3.76594 3.80335 3.83835 3.92044 3.94876 4.02807 4.14933 4.21330 4.27925 4.33051 4.50968 4.54708 4.55467 4.56393 4.59379 4.64203 4.72022 4.72835 4.77145 4.80883 4.84372 4.87841 4.89998 4.94329 4.98935 5.04168 5.05298 5.11839 5.16033 5.25958 5.28403 5.29348 5.60266 5.82969 6.04076 6.36855 6.87366 7.03746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.116 3.884 3 C -0.142 4.142 4 C -0.183 4.183 5 O -0.350 6.350 6 C 0.467 3.533 7 O -0.501 6.501 8 C -0.081 4.081 9 H 0.108 0.892 10 C -0.102 4.102 11 C -0.110 4.110 12 C -0.103 4.103 13 H 0.081 0.919 14 C 0.139 3.861 15 N -0.692 5.692 16 C 0.326 3.674 17 N -0.551 5.551 18 C 0.120 3.880 19 C -0.306 4.306 20 C -0.017 4.017 21 O -0.526 6.526 22 Si 0.654 3.346 23 S 0.085 5.915 24 C -0.113 4.113 25 C -0.110 4.110 26 H 0.061 0.939 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.061 0.939 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.414 0.586 42 H 0.176 0.824 43 H 0.125 0.875 44 H 0.377 0.623 45 H -0.244 1.244 46 H -0.238 1.238 47 H 0.068 0.932 48 H 0.071 0.929 49 H 0.069 0.931 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.152 1.892 -2.689 3.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.080 3.920 3 C -0.199 4.199 4 C -0.240 4.240 5 O -0.268 6.268 6 C 0.310 3.690 7 O -0.389 6.389 8 C -0.100 4.100 9 H 0.126 0.874 10 C -0.140 4.140 11 C -0.148 4.148 12 C -0.122 4.122 13 H 0.099 0.901 14 C 0.013 3.987 15 N -0.332 5.332 16 C -0.044 4.044 17 N -0.276 5.276 18 C -0.031 4.031 19 C -0.429 4.429 20 C -0.130 4.130 21 O -0.333 6.333 22 Si 0.553 3.447 23 S 0.334 5.666 24 C -0.151 4.151 25 C -0.148 4.148 26 H 0.080 0.920 27 H 0.091 0.909 28 H 0.102 0.898 29 H 0.086 0.914 30 H 0.098 0.902 31 H 0.086 0.914 32 H 0.101 0.899 33 H 0.091 0.909 34 H 0.080 0.920 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.251 0.749 42 H 0.193 0.807 43 H 0.143 0.857 44 H 0.224 0.776 45 H -0.168 1.168 46 H -0.161 1.161 47 H 0.086 0.914 48 H 0.090 0.910 49 H 0.088 0.912 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.708 1.859 -3.311 4.163 hybrid contribution -0.656 0.681 1.035 1.402 sum 1.052 2.539 -2.275 3.568 Atomic orbital electron populations 1.22495 0.93916 1.04716 1.02947 1.22220 0.94463 0.92352 0.82920 1.21866 1.02277 0.92483 1.03258 1.22486 1.01681 1.03092 0.96743 1.86548 1.69692 1.25314 1.45199 1.23653 0.77236 0.80653 0.87473 1.90595 1.35108 1.69994 1.43178 1.21162 0.98055 0.95869 0.94939 0.87369 1.21428 1.01448 0.92123 0.98989 1.21496 0.93667 1.01172 0.98424 1.21493 0.96643 0.95906 0.98174 0.90065 1.21466 0.78313 1.00575 0.98310 1.44067 1.07244 1.58614 1.23313 1.23737 0.92979 0.95397 0.92329 1.66492 1.37556 1.18908 1.04694 1.21331 0.87891 0.96119 0.97798 1.25503 0.99893 1.15447 1.02052 1.24066 1.03188 1.00186 0.85548 1.86615 1.94093 1.26661 1.25901 0.95209 0.76976 0.83856 0.88675 1.83980 1.05062 1.54688 1.22907 1.21616 1.00640 0.94559 0.98285 1.21519 0.92154 1.01849 0.99258 0.91961 0.90874 0.89850 0.91415 0.90191 0.91406 0.89869 0.90891 0.91982 0.90744 0.90582 0.91072 0.90632 0.91197 0.91144 0.74874 0.80746 0.85746 0.77555 1.16785 1.16118 0.91367 0.90998 0.91232 0.90275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.14 8.37 37.16 0.31 0.17 16 2 C 0.12 0.08 1.13 -90.62 -0.10 -0.02 16 3 C -0.14 0.14 8.85 37.16 0.33 0.47 16 4 C -0.18 -0.12 8.37 37.16 0.31 0.19 16 5 O -0.35 -0.51 9.79 -39.25 -0.38 -0.89 16 6 C 0.47 0.62 6.57 36.00 0.24 0.86 16 7 O -0.50 -1.77 11.48 -18.75 -0.22 -1.99 16 8 C -0.08 0.12 2.63 -91.77 -0.24 -0.13 16 9 H 0.11 -0.25 8.14 -51.93 -0.42 -0.67 16 10 C -0.10 0.16 4.49 -26.73 -0.12 0.04 16 11 C -0.11 0.32 5.20 -26.73 -0.14 0.18 16 12 C -0.10 0.34 2.22 -90.62 -0.20 0.14 16 13 H 0.08 -0.27 8.14 -51.93 -0.42 -0.69 16 14 C 0.14 -0.24 5.34 -4.04 -0.02 -0.27 16 15 N -0.69 0.93 5.44 -62.30 -0.34 0.59 16 16 C 0.33 0.34 8.09 -87.69 -0.71 -0.36 16 17 N -0.55 -1.59 10.14 -15.21 -0.15 -1.75 16 18 C 0.12 0.23 11.22 -19.14 -0.21 0.02 16 19 C -0.31 -0.23 5.74 -36.02 -0.21 -0.44 16 20 C -0.02 0.00 2.99 36.00 0.11 0.11 16 21 O -0.53 -0.62 12.87 -35.23 -0.45 -1.08 16 22 Si 0.65 -0.37 31.05 -169.99 -5.28 -5.65 16 23 S 0.08 -0.01 20.57 -107.50 -2.21 -2.22 16 24 C -0.11 0.39 5.08 -26.73 -0.14 0.25 16 25 C -0.11 0.28 5.14 -26.73 -0.14 0.14 16 26 H 0.06 0.03 8.14 -51.93 -0.42 -0.39 16 27 H 0.07 -0.03 8.14 -51.93 -0.42 -0.45 16 28 H 0.08 0.22 5.89 -51.93 -0.31 -0.09 16 29 H 0.07 -0.08 8.14 -51.93 -0.42 -0.50 16 30 H 0.08 -0.17 8.14 -51.93 -0.42 -0.59 16 31 H 0.07 -0.07 8.14 -51.93 -0.42 -0.49 16 32 H 0.08 0.20 5.89 -51.93 -0.31 -0.10 16 33 H 0.07 -0.03 8.14 -51.93 -0.42 -0.46 16 34 H 0.06 0.02 8.14 -51.93 -0.42 -0.41 16 35 H 0.07 -0.05 8.10 -51.93 -0.42 -0.47 16 36 H 0.08 -0.05 8.10 -51.93 -0.42 -0.47 16 37 H 0.07 -0.22 8.14 -51.93 -0.42 -0.64 16 38 H 0.08 -0.22 8.14 -51.93 -0.42 -0.64 16 39 H 0.07 -0.05 8.14 -51.93 -0.42 -0.47 16 40 H 0.07 -0.05 8.14 -51.93 -0.42 -0.47 16 41 H 0.41 -1.39 7.78 -40.82 -0.32 -1.70 16 42 H 0.18 0.15 8.06 -52.49 -0.42 -0.27 16 43 H 0.12 -0.12 7.96 -51.93 -0.41 -0.54 16 44 H 0.38 -0.54 8.70 45.56 0.40 -0.14 16 45 H -0.24 -0.32 7.11 56.52 0.40 0.08 16 46 H -0.24 -0.50 7.11 56.52 0.40 -0.10 16 47 H 0.07 -0.26 7.18 -51.93 -0.37 -0.63 16 48 H 0.07 -0.22 8.14 -51.93 -0.42 -0.64 16 49 H 0.07 -0.15 8.14 -51.93 -0.42 -0.57 16 50 H 0.08 -0.18 8.11 -51.93 -0.42 -0.60 16 LS Contribution 404.89 15.07 6.10 6.10 Total: 0.00 -6.23 404.89 -12.41 -18.64 By element: Atomic # 1 Polarization: -4.57 SS G_CDS: -8.54 Total: -13.11 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: -0.93 Total: 1.35 kcal Atomic # 7 Polarization: -0.66 SS G_CDS: -0.49 Total: -1.15 kcal Atomic # 8 Polarization: -2.90 SS G_CDS: -1.05 Total: -3.96 kcal Atomic # 14 Polarization: -0.37 SS G_CDS: -5.28 Total: -5.65 kcal Atomic # 16 Polarization: -0.01 SS G_CDS: -2.21 Total: -2.22 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -6.23 -12.41 -18.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14037212_15704118.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.214 kcal (2) G-P(sol) polarization free energy of solvation -6.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds