Wall clock time and date at job start Mon Mar 8 2021 07:20:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46886 * 2 1 4 4 C 1.52997 * 109.47282 * 239.99639 * 2 1 3 5 5 O 1.45198 * 109.46931 * 119.99526 * 2 1 3 6 6 C 1.34225 * 117.00275 * 60.00255 * 5 2 1 7 7 O 1.20831 * 119.99587 * 359.97438 * 6 5 2 8 8 C 1.50696 * 120.00468 * 180.02562 * 6 5 2 9 9 H 1.08996 * 109.47390 * 60.00021 * 8 6 5 10 10 C 1.52997 * 109.47242 * 180.02562 * 8 6 5 11 11 C 1.53006 * 109.47127 * 180.02562 * 10 8 6 12 12 C 1.52999 * 109.46626 * 299.99539 * 11 10 8 13 13 H 1.08993 * 109.47839 * 299.99931 * 12 11 10 14 14 C 1.53006 * 109.47000 * 180.02562 * 12 11 10 15 15 N 1.46501 * 109.47428 * 175.00339 * 14 12 11 16 16 C 1.38607 * 120.00103 * 180.02562 * 15 14 12 17 17 N 1.29685 * 124.94806 * 0.02562 * 16 15 14 18 18 C 1.32119 * 116.86697 * 179.97438 * 17 16 15 19 19 C 1.33332 * 114.57860 * 359.97438 * 18 17 16 20 20 C 1.50694 * 125.95122 * 179.97438 * 19 18 17 21 21 O 1.42897 * 109.47616 * 300.00291 * 20 19 18 22 22 Si 1.86303 * 109.46939 * 180.02562 * 20 19 18 23 23 S 1.70964 * 124.94982 * 179.71849 * 16 15 14 24 24 C 1.52997 * 109.46991 * 60.00378 * 12 11 10 25 25 C 1.52996 * 109.47131 * 299.99311 * 24 12 11 26 26 H 1.08995 * 109.47441 * 300.00275 * 1 2 3 27 27 H 1.09006 * 109.46468 * 60.00516 * 1 2 3 28 28 H 1.08995 * 109.46829 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46855 * 179.97438 * 3 2 1 30 30 H 1.09006 * 109.47145 * 299.99069 * 3 2 1 31 31 H 1.08995 * 109.47305 * 59.99642 * 3 2 1 32 32 H 1.08995 * 109.47467 * 299.99950 * 4 2 1 33 33 H 1.08996 * 109.47244 * 59.99977 * 4 2 1 34 34 H 1.09003 * 109.47209 * 180.02562 * 4 2 1 35 35 H 1.09001 * 109.47502 * 60.00161 * 10 8 6 36 36 H 1.09001 * 109.47289 * 299.99957 * 10 8 6 37 37 H 1.08993 * 109.46955 * 60.00011 * 11 10 8 38 38 H 1.09000 * 109.47050 * 179.97438 * 11 10 8 39 39 H 1.09001 * 109.47164 * 295.00510 * 14 12 11 40 40 H 1.08998 * 109.46741 * 54.99859 * 14 12 11 41 41 H 0.97003 * 119.99355 * 0.02562 * 15 14 12 42 42 H 1.07996 * 122.71548 * 179.97438 * 18 17 16 43 43 H 1.09000 * 109.47500 * 60.00656 * 20 19 18 44 44 H 0.96706 * 114.00166 * 299.99964 * 21 20 19 45 45 H 1.48494 * 110.00019 * 58.68374 * 22 20 19 46 46 H 1.48504 * 110.00104 * 180.02562 * 22 20 19 47 47 H 1.09001 * 109.47289 * 179.97438 * 24 12 11 48 48 H 1.09000 * 109.47611 * 59.99933 * 24 12 11 49 49 H 1.08996 * 109.47452 * 300.00000 * 25 24 12 50 50 H 1.09000 * 109.47054 * 180.02562 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6534 -1.9683 1.3380 7 8 0.9560 -2.5024 0.5084 8 6 2.1173 -2.7432 2.5444 9 1 1.7530 -2.2582 3.4499 10 6 1.5709 -4.1706 2.4747 11 6 2.0414 -4.9572 3.6998 12 6 3.5707 -4.9971 3.7237 13 1 3.9357 -5.4821 2.8184 14 6 4.0413 -5.7842 4.9484 15 7 5.4990 -5.9248 4.9081 16 6 6.1578 -6.6060 5.9196 17 7 5.5812 -7.1554 6.9432 18 6 6.3653 -7.7665 7.8134 19 6 7.6632 -7.7319 7.5102 20 6 8.7775 -8.3434 8.3197 21 8 8.7938 -7.7607 9.6244 22 14 10.4070 -8.0214 7.4760 23 16 7.8481 -6.8509 5.9959 24 6 4.1171 -3.5697 3.7933 25 6 3.6466 -2.7832 2.5683 26 1 -0.3634 0.5138 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3633 -1.0276 0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8901 31 1 1.6766 1.9564 0.8899 32 1 1.6768 -1.7489 -1.2492 33 1 1.6768 -0.2076 -2.1392 34 1 3.1301 -0.7217 -1.2489 35 1 1.9356 -4.6555 1.5691 36 1 0.4814 -4.1422 2.4581 37 1 1.6764 -4.4722 4.6051 38 1 1.6518 -5.9739 3.6504 39 1 3.7525 -5.2525 5.8550 40 1 3.5807 -6.7721 4.9444 41 1 6.0030 -5.5411 4.1735 42 1 5.9857 -8.2547 8.6987 43 1 8.6178 -9.4184 8.4039 44 1 8.9321 -6.8036 9.6260 45 1 10.6217 -6.5596 7.3270 46 1 11.5141 -8.6200 8.2642 47 1 5.2066 -3.5981 3.8108 48 1 3.7522 -3.0847 4.6987 49 1 4.0116 -3.2681 1.6629 50 1 4.0362 -1.7664 2.6177 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14037212_15704118.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:20:28 Heat of formation + Delta-G solvation = -81.542732 kcal Electronic energy + Delta-G solvation = -29280.404668 eV Core-core repulsion = 25207.569947 eV Total energy + Delta-G solvation = -4072.834721 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 355.165 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.07121 -40.77882 -39.86630 -38.23118 -37.90712 -36.52845 -35.10450 -32.99083 -31.80377 -31.10447 -28.43694 -28.34932 -27.93356 -26.34292 -24.79126 -23.89029 -23.68357 -22.16069 -20.96277 -20.70207 -20.47137 -19.67754 -18.26133 -18.19022 -17.59277 -17.21014 -17.03328 -16.55159 -16.18455 -16.12731 -15.73350 -15.71655 -15.48599 -15.16279 -15.00958 -14.94793 -14.80954 -14.60080 -13.93275 -13.91148 -13.66199 -13.44469 -13.27001 -13.16199 -13.01547 -12.94980 -12.90887 -12.88942 -12.54070 -12.45095 -12.34527 -12.11774 -12.07304 -12.02654 -11.65903 -11.46671 -11.39901 -11.26704 -11.05600 -10.87830 -10.85947 -10.28406 -10.18455 -8.69994 -5.02760 -0.03469 0.05532 0.68950 1.17670 1.26820 1.55833 1.67279 1.89535 1.99233 2.22457 3.39001 3.41059 3.58950 3.62396 3.67487 3.71531 3.75795 3.86621 3.91577 3.95181 3.98551 4.17076 4.28507 4.38863 4.46121 4.50259 4.53200 4.54438 4.59121 4.68356 4.70420 4.70856 4.73642 4.77487 4.82533 4.83039 4.86653 4.98511 5.03946 5.07956 5.09229 5.12901 5.18768 5.19538 5.21900 5.24077 5.33208 5.47209 5.56367 5.84807 6.17692 6.44949 6.79222 7.03735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.107 3.893 3 C -0.138 4.138 4 C -0.179 4.179 5 O -0.355 6.355 6 C 0.463 3.537 7 O -0.528 6.528 8 C -0.079 4.079 9 H 0.120 0.880 10 C -0.097 4.097 11 C -0.105 4.105 12 C -0.092 4.092 13 H 0.086 0.914 14 C 0.145 3.855 15 N -0.683 5.683 16 C 0.315 3.685 17 N -0.580 5.580 18 C 0.104 3.896 19 C -0.308 4.308 20 C -0.022 4.022 21 O -0.543 6.543 22 Si 0.723 3.277 23 S 0.112 5.888 24 C -0.108 4.108 25 C -0.104 4.104 26 H 0.063 0.937 27 H 0.085 0.915 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.093 0.907 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.084 0.916 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.424 0.576 42 H 0.177 0.823 43 H 0.134 0.866 44 H 0.386 0.614 45 H -0.266 1.266 46 H -0.275 1.275 47 H 0.078 0.922 48 H 0.072 0.928 49 H 0.067 0.933 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.857 2.523 -2.980 4.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.071 3.929 3 C -0.195 4.195 4 C -0.236 4.236 5 O -0.272 6.272 6 C 0.308 3.692 7 O -0.417 6.417 8 C -0.097 4.097 9 H 0.138 0.862 10 C -0.135 4.135 11 C -0.143 4.143 12 C -0.111 4.111 13 H 0.104 0.896 14 C 0.020 3.980 15 N -0.324 5.324 16 C -0.055 4.055 17 N -0.307 5.307 18 C -0.047 4.047 19 C -0.431 4.431 20 C -0.135 4.135 21 O -0.351 6.351 22 Si 0.626 3.374 23 S 0.361 5.639 24 C -0.146 4.146 25 C -0.142 4.142 26 H 0.082 0.918 27 H 0.103 0.897 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.112 0.888 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.103 0.897 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.263 0.737 42 H 0.194 0.806 43 H 0.152 0.848 44 H 0.235 0.765 45 H -0.192 1.192 46 H -0.201 1.201 47 H 0.096 0.904 48 H 0.091 0.909 49 H 0.085 0.915 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.404 2.506 -3.619 5.016 hybrid contribution -0.877 0.506 1.120 1.510 sum 1.527 3.013 -2.500 4.202 Atomic orbital electron populations 1.22462 0.94196 1.03514 1.03632 1.22413 0.94401 0.93316 0.82722 1.21874 1.02444 0.91217 1.04000 1.22445 1.01833 1.02001 0.97364 1.86554 1.69688 1.25419 1.45561 1.24203 0.76607 0.80611 0.87802 1.90589 1.36351 1.70445 1.44330 1.21252 0.98934 0.95475 0.94084 0.86225 1.21358 1.00718 0.92240 0.99168 1.21457 0.93959 1.01021 0.97872 1.21387 0.96212 0.95917 0.97589 0.89615 1.21381 0.78065 1.00056 0.98545 1.44125 1.07444 1.57878 1.22981 1.23964 0.93774 0.95383 0.92420 1.66485 1.38570 1.20025 1.05602 1.21436 0.88411 0.96714 0.98115 1.25613 0.99700 1.15250 1.02506 1.24267 1.03312 1.00729 0.85166 1.86587 1.94170 1.27680 1.26647 0.94402 0.74468 0.81260 0.87297 1.83821 1.03886 1.54100 1.22045 1.21584 1.01200 0.94027 0.97770 1.21475 0.91041 1.02044 0.99596 0.91798 0.89659 0.91924 0.91129 0.88838 0.91291 0.91935 0.89721 0.91628 0.91749 0.91712 0.90574 0.90548 0.92043 0.92202 0.73655 0.80603 0.84840 0.76458 1.19153 1.20105 0.90371 0.90894 0.91470 0.90205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.39 8.37 71.98 0.60 0.21 16 2 C 0.11 0.18 1.13 -10.79 -0.01 0.16 16 3 C -0.14 0.37 8.85 71.98 0.64 1.01 16 4 C -0.18 -0.31 8.37 71.98 0.60 0.29 16 5 O -0.35 -1.18 9.79 -51.37 -0.50 -1.68 16 6 C 0.46 1.65 6.57 71.23 0.47 2.12 16 7 O -0.53 -4.61 11.48 21.95 0.25 -4.35 16 8 C -0.08 0.20 2.63 -11.54 -0.03 0.17 16 9 H 0.12 -0.58 8.14 -2.39 -0.02 -0.60 16 10 C -0.10 0.24 4.49 30.60 0.14 0.38 16 11 C -0.11 0.61 5.20 30.60 0.16 0.77 16 12 C -0.09 0.65 2.22 -10.79 -0.02 0.63 16 13 H 0.09 -0.63 8.14 -2.39 -0.02 -0.65 16 14 C 0.15 -0.54 5.34 86.38 0.46 -0.08 16 15 N -0.68 2.21 5.44 -351.00 -1.91 0.30 16 16 C 0.32 0.60 8.09 179.32 1.45 2.05 16 17 N -0.58 -3.57 10.14 -202.03 -2.05 -5.62 16 18 C 0.10 0.45 11.22 83.54 0.94 1.39 16 19 C -0.31 -0.43 5.74 24.57 0.14 -0.29 16 20 C -0.02 0.01 2.99 71.23 0.21 0.22 16 21 O -0.54 -1.32 12.87 -148.98 -1.92 -3.24 16 22 Si 0.72 -0.99 31.05 68.60 2.13 1.14 16 23 S 0.11 -0.09 20.57 -56.49 -1.16 -1.25 16 24 C -0.11 0.84 5.08 30.59 0.16 1.00 16 25 C -0.10 0.57 5.14 30.59 0.16 0.73 16 26 H 0.06 0.10 8.14 -2.39 -0.02 0.08 16 27 H 0.08 -0.06 8.14 -2.38 -0.02 -0.08 16 28 H 0.06 0.42 5.89 -2.39 -0.01 0.41 16 29 H 0.07 -0.21 8.14 -2.39 -0.02 -0.23 16 30 H 0.09 -0.51 8.14 -2.38 -0.02 -0.53 16 31 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 32 H 0.06 0.40 5.89 -2.39 -0.01 0.38 16 33 H 0.08 -0.09 8.14 -2.39 -0.02 -0.11 16 34 H 0.06 0.05 8.14 -2.39 -0.02 0.03 16 35 H 0.06 -0.02 8.10 -2.39 -0.02 -0.04 16 36 H 0.06 0.00 8.10 -2.39 -0.02 -0.02 16 37 H 0.08 -0.49 8.14 -2.39 -0.02 -0.51 16 38 H 0.08 -0.42 8.14 -2.39 -0.02 -0.44 16 39 H 0.06 -0.09 8.14 -2.39 -0.02 -0.11 16 40 H 0.06 -0.06 8.14 -2.39 -0.02 -0.08 16 41 H 0.42 -3.31 7.78 -92.71 -0.72 -4.03 16 42 H 0.18 0.47 8.06 -2.91 -0.02 0.45 16 43 H 0.13 -0.31 7.96 -2.39 -0.02 -0.33 16 44 H 0.39 -1.06 8.70 -74.05 -0.64 -1.71 16 45 H -0.27 -0.60 7.11 99.48 0.71 0.10 16 46 H -0.28 -1.33 7.11 99.48 0.71 -0.63 16 47 H 0.08 -0.72 7.18 -2.39 -0.02 -0.74 16 48 H 0.07 -0.53 8.14 -2.39 -0.02 -0.55 16 49 H 0.07 -0.31 8.14 -2.39 -0.02 -0.33 16 50 H 0.08 -0.41 8.11 -2.39 -0.02 -0.43 16 Total: 0.00 -15.36 404.89 0.51 -14.85 By element: Atomic # 1 Polarization: -10.51 SS G_CDS: -0.39 Total: -10.90 kcal Atomic # 6 Polarization: 4.69 SS G_CDS: 6.06 Total: 10.75 kcal Atomic # 7 Polarization: -1.36 SS G_CDS: -3.96 Total: -5.32 kcal Atomic # 8 Polarization: -7.11 SS G_CDS: -2.17 Total: -9.27 kcal Atomic # 14 Polarization: -0.99 SS G_CDS: 2.13 Total: 1.14 kcal Atomic # 16 Polarization: -0.09 SS G_CDS: -1.16 Total: -1.25 kcal Total: -15.36 0.51 -14.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14037212_15704118.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.691 kcal (2) G-P(sol) polarization free energy of solvation -15.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds