Wall clock time and date at job start Mon Mar 8 2021 07:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.33323 * 125.95359 * 2 1 4 4 C 1.50698 * 122.71002 * 0.02647 * 3 2 1 5 5 O 1.42902 * 109.47210 * 329.96629 * 4 3 2 6 6 Si 1.86303 * 109.46828 * 209.97408 * 4 3 2 7 7 N 1.32124 * 114.58053 * 180.02562 * 3 2 1 8 8 C 1.29683 * 116.86353 * 0.02562 * 7 3 2 9 9 N 1.38609 * 124.94801 * 179.97438 * 8 7 3 10 10 C 1.46499 * 119.99887 * 180.02562 * 9 8 7 11 11 C 1.52998 * 109.47203 * 180.02562 * 10 9 8 12 12 H 1.09003 * 109.46958 * 304.99382 * 11 10 9 13 13 C 1.53002 * 109.47366 * 64.99444 * 11 10 9 14 14 C 1.52998 * 109.47366 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.47371 * 300.00709 * 14 13 11 16 16 H 1.09003 * 109.46450 * 299.99540 * 15 14 13 17 17 C 1.50700 * 109.47351 * 179.97438 * 15 14 13 18 18 O 1.20827 * 120.00101 * 239.99916 * 17 15 14 19 19 O 1.34232 * 119.99949 * 59.99454 * 17 15 14 20 20 C 1.45194 * 117.00164 * 179.97438 * 19 17 15 21 21 C 1.53011 * 109.47074 * 60.00130 * 20 19 17 22 22 C 1.53000 * 109.47417 * 179.97438 * 20 19 17 23 23 C 1.53001 * 109.47394 * 300.00361 * 20 19 17 24 24 C 1.52997 * 109.47361 * 59.99669 * 15 14 13 25 25 C 1.53000 * 109.47381 * 184.99757 * 11 10 9 26 26 S 1.70968 * 110.10323 * 0.02562 * 8 7 3 27 27 H 1.08994 * 109.47703 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46900 * 300.00245 * 1 2 3 29 29 H 1.09009 * 109.46914 * 59.99762 * 1 2 3 30 30 H 1.08996 * 109.47963 * 89.97205 * 4 3 2 31 31 H 0.96695 * 114.00486 * 300.00652 * 5 4 3 32 32 H 1.48490 * 110.00432 * 58.67755 * 6 4 3 33 33 H 1.48507 * 109.99839 * 179.97438 * 6 4 3 34 34 H 0.96995 * 120.00425 * 0.02562 * 9 8 7 35 35 H 1.09003 * 109.47191 * 299.99866 * 10 9 8 36 36 H 1.08999 * 109.47654 * 59.99485 * 10 9 8 37 37 H 1.08997 * 109.47292 * 300.00707 * 13 11 10 38 38 H 1.08997 * 109.46738 * 60.00615 * 13 11 10 39 39 H 1.08999 * 109.47250 * 180.02562 * 14 13 11 40 40 H 1.09003 * 109.46958 * 59.99938 * 14 13 11 41 41 H 1.09004 * 109.46431 * 59.99639 * 21 20 19 42 42 H 1.08997 * 109.47150 * 179.97438 * 21 20 19 43 43 H 1.09002 * 109.46755 * 300.00532 * 21 20 19 44 44 H 1.09001 * 109.46654 * 60.00620 * 22 20 19 45 45 H 1.08997 * 109.47436 * 180.02562 * 22 20 19 46 46 H 1.08999 * 109.47164 * 300.00150 * 22 20 19 47 47 H 1.09005 * 109.46679 * 59.99896 * 23 20 19 48 48 H 1.08997 * 109.47339 * 179.97438 * 23 20 19 49 49 H 1.08999 * 109.46858 * 300.00011 * 23 20 19 50 50 H 1.09002 * 109.47413 * 180.02562 * 24 15 14 51 51 H 1.08997 * 109.47049 * 59.99909 * 24 15 14 52 52 H 1.08997 * 109.47431 * 299.99819 * 25 11 10 53 53 H 1.08999 * 109.46988 * 59.99767 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2898 1.0792 0.0000 4 6 1.7415 2.4829 0.0006 5 8 0.4815 2.5024 -0.6733 6 14 2.9326 3.6152 -0.8771 7 7 3.5851 0.8187 -0.0005 8 6 3.9315 -0.4310 -0.0015 9 7 5.2384 -0.8927 -0.0027 10 6 5.5064 -2.3330 -0.0043 11 6 7.0179 -2.5705 -0.0047 12 1 7.4682 -2.0438 -0.8461 13 6 7.6165 -2.0488 1.3031 14 6 9.1281 -2.2857 1.3024 15 6 9.4094 -3.7842 1.1746 16 1 8.9594 -4.3112 2.0160 17 6 10.8982 -4.0175 1.1733 18 8 11.4260 -4.5468 0.2240 19 8 11.6381 -3.6372 2.2268 20 6 13.0655 -3.8938 2.1569 21 6 13.6574 -3.1593 0.9522 22 6 13.7368 -3.3948 3.4380 23 6 13.3067 -5.3972 2.0064 24 6 8.8108 -4.3059 -0.1332 25 6 7.2986 -4.0691 -0.1320 26 16 2.5412 -1.4261 -0.0025 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.6092 2.8210 1.0283 31 1 0.5238 2.2130 -1.5949 32 1 3.1461 3.1467 -2.2699 33 1 2.4031 5.0026 -0.8840 34 1 5.9755 -0.2623 -0.0025 35 1 5.0682 -2.7851 0.8855 36 1 5.0672 -2.7834 -0.8944 37 1 7.4165 -0.9812 1.3938 38 1 7.1663 -2.5756 2.1443 39 1 9.5545 -1.9144 2.2342 40 1 9.5781 -1.7586 0.4610 41 1 13.4855 -2.0882 1.0595 42 1 14.7290 -3.3515 0.9000 43 1 13.1791 -3.5143 0.0393 44 1 13.3153 -3.9179 4.2964 45 1 14.8084 -3.5871 3.3853 46 1 13.5650 -2.3238 3.5448 47 1 12.8285 -5.7522 1.0934 48 1 14.3782 -5.5898 1.9534 49 1 12.8850 -5.9205 2.8645 50 1 9.0108 -5.3735 -0.2239 51 1 9.2607 -3.7787 -0.9744 52 1 6.8484 -4.5960 0.7092 53 1 6.8722 -4.4408 -1.0637 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14037212_15704122.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:20:32 Heat of formation + Delta-G solvation = -82.965745 kcal Electronic energy + Delta-G solvation = -31484.968275 eV Core-core repulsion = 27256.534228 eV Total energy + Delta-G solvation = -4228.434047 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 369.181 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.06056 -41.05877 -39.96691 -38.27234 -37.83982 -36.56645 -35.10163 -33.37896 -32.13238 -31.69411 -29.41988 -28.43282 -28.34332 -27.31953 -25.57788 -24.53105 -24.03109 -23.53800 -22.14599 -21.06155 -20.48612 -20.42828 -19.07368 -18.23592 -17.98617 -17.61615 -17.36186 -17.13169 -16.72849 -16.15948 -16.06054 -15.75266 -15.65244 -15.48331 -15.14120 -14.99758 -14.88860 -14.61778 -14.26196 -14.18968 -13.83987 -13.73213 -13.66477 -13.43621 -13.41920 -13.24820 -13.15907 -12.99632 -12.93633 -12.89810 -12.77381 -12.53876 -12.45321 -12.32281 -12.09881 -12.05829 -11.96208 -11.68297 -11.44498 -11.37307 -11.15255 -10.93874 -10.85624 -10.63004 -10.54361 -10.00107 -8.59231 -4.78772 0.00555 0.18710 0.75890 1.18790 1.30404 1.67045 1.68630 1.84110 1.98236 2.01922 3.30160 3.41100 3.52434 3.59684 3.67426 3.68140 3.75636 3.81590 3.91577 3.96895 4.13419 4.18822 4.28791 4.34053 4.38999 4.43629 4.51050 4.53325 4.54634 4.55082 4.61359 4.63608 4.70840 4.77622 4.81446 4.83087 4.83858 4.85904 4.90776 4.96266 5.05970 5.08342 5.09459 5.13655 5.19221 5.19870 5.23585 5.24536 5.29724 5.34565 5.46908 5.57436 5.66867 6.32055 6.44796 6.80198 6.95358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C -0.260 4.260 3 C 0.057 3.943 4 C -0.040 4.040 5 O -0.533 6.533 6 Si 0.782 3.218 7 N -0.560 5.560 8 C 0.312 3.688 9 N -0.685 5.685 10 C 0.125 3.875 11 C -0.090 4.090 12 H 0.082 0.918 13 C -0.109 4.109 14 C -0.105 4.105 15 C -0.078 4.078 16 H 0.123 0.877 17 C 0.462 3.538 18 O -0.528 6.528 19 O -0.355 6.355 20 C 0.107 3.893 21 C -0.180 4.180 22 C -0.139 4.139 23 C -0.180 4.180 24 C -0.099 4.099 25 C -0.105 4.105 26 S 0.118 5.882 27 H 0.065 0.935 28 H 0.071 0.929 29 H 0.084 0.916 30 H 0.131 0.869 31 H 0.384 0.616 32 H -0.306 1.306 33 H -0.293 1.293 34 H 0.417 0.583 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.063 0.937 41 H 0.064 0.936 42 H 0.084 0.916 43 H 0.062 0.938 44 H 0.069 0.931 45 H 0.093 0.907 46 H 0.069 0.931 47 H 0.062 0.938 48 H 0.084 0.916 49 H 0.064 0.936 50 H 0.066 0.934 51 H 0.061 0.939 52 H 0.082 0.918 53 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.734 -2.782 2.989 4.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.383 4.383 3 C -0.074 4.074 4 C -0.153 4.153 5 O -0.340 6.340 6 Si 0.688 3.312 7 N -0.289 5.289 8 C -0.060 4.060 9 N -0.326 5.326 10 C 0.001 3.999 11 C -0.109 4.109 12 H 0.100 0.900 13 C -0.146 4.146 14 C -0.142 4.142 15 C -0.097 4.097 16 H 0.141 0.859 17 C 0.307 3.693 18 O -0.418 6.418 19 O -0.272 6.272 20 C 0.072 3.928 21 C -0.237 4.237 22 C -0.196 4.196 23 C -0.238 4.238 24 C -0.136 4.136 25 C -0.143 4.143 26 S 0.367 5.633 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.102 0.898 30 H 0.149 0.851 31 H 0.234 0.766 32 H -0.234 1.234 33 H -0.221 1.221 34 H 0.256 0.744 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.103 0.897 43 H 0.081 0.919 44 H 0.088 0.912 45 H 0.111 0.889 46 H 0.088 0.912 47 H 0.081 0.919 48 H 0.103 0.897 49 H 0.083 0.917 50 H 0.084 0.916 51 H 0.079 0.921 52 H 0.101 0.899 53 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.164 -3.101 2.638 4.611 hybrid contribution -0.372 0.386 -0.955 1.095 sum 1.793 -2.715 1.683 3.663 Atomic orbital electron populations 1.20139 0.85780 1.02083 1.03609 1.25332 1.02030 0.93236 1.17701 1.20188 0.87099 0.97510 1.02575 1.24476 0.91662 0.95116 1.04052 1.86596 1.28652 1.89092 1.29644 0.92896 0.85321 0.73797 0.79186 1.65728 1.17172 1.17229 1.28743 1.23508 0.92813 0.91397 0.98265 1.44097 1.00991 1.08093 1.79430 1.21726 0.97191 0.78197 1.02756 1.21322 0.92637 0.97527 0.99376 0.89955 1.21590 0.93572 1.02085 0.97390 1.21473 0.97677 0.91900 1.03178 1.21266 0.85670 1.00399 1.02349 0.85910 1.24252 0.91639 0.73843 0.79592 1.90588 1.74234 1.40694 1.36253 1.86556 1.22195 1.75078 1.43409 1.22404 0.76429 0.95958 0.98030 1.22453 1.02626 1.00578 0.98027 1.21874 1.00935 1.02352 0.94393 1.22458 1.03959 0.94389 1.02952 1.21377 0.95846 1.01390 0.95010 1.21491 0.94355 0.94511 1.03944 1.83846 0.95917 1.09741 1.73818 0.91648 0.90997 0.89774 0.85103 0.76619 1.23370 1.22057 0.74401 0.90443 0.90937 0.90648 0.90346 0.90306 0.91867 0.91723 0.89747 0.91938 0.91210 0.88877 0.91185 0.91906 0.89713 0.91714 0.91560 0.92054 0.89898 0.90181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.02 8.91 71.24 0.63 0.61 16 2 C -0.26 -0.88 6.50 24.58 0.16 -0.72 16 3 C 0.06 0.27 5.92 41.40 0.25 0.51 16 4 C -0.04 -0.11 2.94 71.24 0.21 0.10 16 5 O -0.53 -1.38 10.17 -148.98 -1.52 -2.89 16 6 Si 0.78 2.74 32.08 68.60 2.20 4.94 16 7 N -0.56 -2.81 8.95 -189.87 -1.70 -4.51 16 8 C 0.31 0.59 8.24 179.32 1.48 2.07 16 9 N -0.68 2.48 5.44 -351.01 -1.91 0.57 16 10 C 0.12 -0.95 4.92 86.38 0.43 -0.52 16 11 C -0.09 0.80 2.22 -10.79 -0.02 0.77 16 12 H 0.08 -0.65 8.14 -2.39 -0.02 -0.67 16 13 C -0.11 0.94 5.08 30.59 0.16 1.10 16 14 C -0.10 0.60 5.14 30.59 0.16 0.76 16 15 C -0.08 0.28 2.63 -11.54 -0.03 0.25 16 16 H 0.12 -0.78 8.14 -2.39 -0.02 -0.80 16 17 C 0.46 1.43 6.57 71.24 0.47 1.90 16 18 O -0.53 -4.39 11.48 21.96 0.25 -4.14 16 19 O -0.36 -1.09 9.79 -51.43 -0.50 -1.59 16 20 C 0.11 0.16 1.13 -10.79 -0.01 0.15 16 21 C -0.18 -0.33 8.37 71.99 0.60 0.27 16 22 C -0.14 0.37 8.85 71.98 0.64 1.01 16 23 C -0.18 -0.33 8.37 71.98 0.60 0.27 16 24 C -0.10 0.38 4.49 30.61 0.14 0.52 16 25 C -0.11 0.89 5.21 30.61 0.16 1.05 16 26 S 0.12 0.09 22.32 -56.49 -1.26 -1.17 16 27 H 0.06 -0.08 8.14 -2.39 -0.02 -0.10 16 28 H 0.07 0.09 8.14 -2.39 -0.02 0.07 16 29 H 0.08 -0.08 6.40 -2.38 -0.02 -0.10 16 30 H 0.13 0.13 7.96 -2.39 -0.02 0.11 16 31 H 0.38 -0.77 8.13 -74.06 -0.60 -1.38 16 32 H -0.31 -3.01 7.11 99.48 0.71 -2.31 16 33 H -0.29 -2.49 7.11 99.48 0.71 -1.79 16 34 H 0.42 -2.10 7.78 -92.71 -0.72 -2.82 16 35 H 0.08 -0.64 8.14 -2.39 -0.02 -0.66 16 36 H 0.07 -0.54 8.14 -2.39 -0.02 -0.56 16 37 H 0.07 -0.65 7.18 -2.39 -0.02 -0.67 16 38 H 0.08 -0.73 8.14 -2.39 -0.02 -0.75 16 39 H 0.08 -0.40 8.11 -2.39 -0.02 -0.42 16 40 H 0.06 -0.26 8.14 -2.39 -0.02 -0.28 16 41 H 0.06 0.07 8.14 -2.38 -0.02 0.05 16 42 H 0.08 -0.08 8.14 -2.39 -0.02 -0.10 16 43 H 0.06 0.40 5.89 -2.39 -0.01 0.39 16 44 H 0.07 -0.20 8.14 -2.39 -0.02 -0.22 16 45 H 0.09 -0.50 8.14 -2.39 -0.02 -0.52 16 46 H 0.07 -0.21 8.14 -2.39 -0.02 -0.22 16 47 H 0.06 0.40 5.89 -2.38 -0.01 0.39 16 48 H 0.08 -0.08 8.14 -2.39 -0.02 -0.10 16 49 H 0.06 0.07 8.14 -2.39 -0.02 0.05 16 50 H 0.07 -0.11 8.10 -2.39 -0.02 -0.13 16 51 H 0.06 -0.06 8.10 -2.39 -0.02 -0.08 16 52 H 0.08 -0.84 8.14 -2.39 -0.02 -0.86 16 53 H 0.08 -0.71 8.14 -2.39 -0.02 -0.73 16 Total: 0.00 -15.10 421.88 1.19 -13.91 By element: Atomic # 1 Polarization: -14.82 SS G_CDS: -0.38 Total: -15.20 kcal Atomic # 6 Polarization: 4.09 SS G_CDS: 6.00 Total: 10.09 kcal Atomic # 7 Polarization: -0.34 SS G_CDS: -3.61 Total: -3.95 kcal Atomic # 8 Polarization: -6.86 SS G_CDS: -1.77 Total: -8.63 kcal Atomic # 14 Polarization: 2.74 SS G_CDS: 2.20 Total: 4.94 kcal Atomic # 16 Polarization: 0.09 SS G_CDS: -1.26 Total: -1.17 kcal Total: -15.10 1.19 -13.91 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14037212_15704122.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.055 kcal (2) G-P(sol) polarization free energy of solvation -15.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds