Wall clock time and date at job start Mon Mar 8 2021 03:45:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53007 * 109.46652 * 2 1 4 4 C 1.53003 * 109.47173 * 240.00547 * 2 1 3 5 5 O 1.45196 * 109.47127 * 120.00016 * 2 1 3 6 6 C 1.34220 * 116.99913 * 60.00427 * 5 2 1 7 7 O 1.20820 * 120.00497 * 359.97438 * 6 5 2 8 8 C 1.50712 * 120.00031 * 179.97438 * 6 5 2 9 9 H 1.09000 * 109.46559 * 59.99942 * 8 6 5 10 10 C 1.52996 * 109.47086 * 179.97438 * 8 6 5 11 11 C 1.53002 * 109.46972 * 180.02562 * 10 8 6 12 12 C 1.52997 * 109.46817 * 299.99733 * 11 10 8 13 13 H 1.09001 * 109.47502 * 300.00518 * 12 11 10 14 14 C 1.52999 * 109.47317 * 179.97438 * 12 11 10 15 15 N 1.46504 * 109.46822 * 64.99847 * 14 12 11 16 16 C 1.39151 * 120.00034 * 179.97438 * 15 14 12 17 17 N 1.32339 * 119.71581 * 0.02562 * 16 15 14 18 18 C 1.32009 * 121.64505 * 179.97438 * 17 16 15 19 19 C 1.37983 * 120.89962 * 359.97438 * 18 17 16 20 20 C 1.50701 * 120.32824 * 180.02562 * 19 18 17 21 21 O 1.42900 * 109.47175 * 245.00207 * 20 19 18 22 22 Si 1.86298 * 109.46720 * 4.99779 * 20 19 18 23 23 C 1.38912 * 119.34889 * 0.02562 * 19 18 17 24 24 C 1.38444 * 118.48255 * 359.74430 * 23 19 18 25 25 F 1.35097 * 120.47162 * 180.26741 * 24 23 19 26 26 C 1.53006 * 109.47127 * 60.00361 * 12 11 10 27 27 C 1.52997 * 109.46964 * 299.99785 * 8 6 5 28 28 H 1.08997 * 109.47406 * 299.99743 * 1 2 3 29 29 H 1.08995 * 109.47319 * 60.00144 * 1 2 3 30 30 H 1.09003 * 109.46631 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46445 * 180.02562 * 3 2 1 32 32 H 1.08995 * 109.47141 * 299.99965 * 3 2 1 33 33 H 1.08997 * 109.47005 * 60.00011 * 3 2 1 34 34 H 1.09004 * 109.46542 * 299.99635 * 4 2 1 35 35 H 1.08995 * 109.47562 * 59.99458 * 4 2 1 36 36 H 1.09000 * 109.46621 * 179.97438 * 4 2 1 37 37 H 1.08996 * 109.47452 * 59.99790 * 10 8 6 38 38 H 1.09000 * 109.47054 * 299.99950 * 10 8 6 39 39 H 1.09002 * 109.47070 * 179.97438 * 11 10 8 40 40 H 1.08996 * 109.47407 * 59.99513 * 11 10 8 41 41 H 1.08994 * 109.47465 * 185.00197 * 14 12 11 42 42 H 1.08998 * 109.47565 * 305.00629 * 14 12 11 43 43 H 0.96995 * 120.00028 * 0.02562 * 15 14 12 44 44 H 1.08001 * 119.54887 * 179.97438 * 18 17 16 45 45 H 1.08995 * 109.47274 * 124.99954 * 20 19 18 46 46 H 0.96708 * 114.00094 * 59.99525 * 21 20 19 47 47 H 1.48507 * 110.00033 * 179.97438 * 22 20 19 48 48 H 1.48498 * 110.00572 * 301.32136 * 22 20 19 49 49 H 1.07998 * 120.75734 * 180.02562 * 23 19 18 50 50 H 1.08993 * 109.46955 * 60.00011 * 26 12 11 51 51 H 1.09000 * 109.47050 * 179.97438 * 26 12 11 52 52 H 1.09002 * 109.47153 * 60.00001 * 27 8 6 53 53 H 1.08993 * 109.47194 * 300.00289 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7211 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6535 -1.9683 1.3378 7 8 0.9561 -2.5025 0.5082 8 6 2.1184 -2.7437 2.5435 9 1 1.7549 -2.2589 3.4495 10 6 1.5708 -4.1707 2.4745 11 6 2.0424 -4.9577 3.6989 12 6 3.5716 -4.9988 3.7208 13 1 3.9351 -5.4839 2.8149 14 6 4.0433 -5.7852 4.9455 15 7 3.6197 -7.1822 4.8216 16 6 3.9362 -8.0965 5.8217 17 7 4.6196 -7.6979 6.8826 18 6 4.9399 -8.5327 7.8538 19 6 4.5702 -9.8608 7.7973 20 6 4.9422 -10.8024 8.9136 21 8 5.8457 -11.7933 8.4198 22 14 5.7603 -9.8451 10.2866 23 6 3.8517 -10.3216 6.7013 24 6 3.5257 -9.4225 5.7003 25 9 2.8233 -9.8261 4.6191 26 6 4.1193 -3.5717 3.7898 27 6 3.6477 -2.7843 2.5651 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6766 1.9564 0.8900 34 1 1.6767 -1.7488 -1.2493 35 1 1.6767 -0.2074 -2.1393 36 1 3.1301 -0.7207 -1.2495 37 1 1.9339 -4.6558 1.5684 38 1 0.4813 -4.1414 2.4593 39 1 1.6519 -5.9742 3.6500 40 1 1.6790 -4.4725 4.6048 41 1 5.1303 -5.7395 5.0102 42 1 3.6072 -5.3519 5.8456 43 1 3.1193 -7.4699 4.0421 44 1 5.4989 -8.1710 8.7042 45 1 4.0435 -11.2876 9.2944 46 1 6.6695 -11.4323 8.0645 47 1 6.1316 -10.7623 11.3940 48 1 6.9695 -9.1530 9.7728 49 1 3.5503 -11.3565 6.6339 50 1 3.7559 -3.0866 4.6957 51 1 5.2087 -3.6011 3.8059 52 1 4.0375 -1.7676 2.6145 53 1 4.0111 -3.2690 1.6591 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14037212_17656566.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 03:45:57 Heat of formation + Delta-G solvation = -132.810938 kcal Electronic energy + Delta-G solvation = -33423.171554 eV Core-core repulsion = 28789.507454 eV Total energy + Delta-G solvation = -4633.664100 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 367.199 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -49.95134 -42.07754 -41.40136 -39.92084 -38.30948 -37.91673 -36.56594 -35.11209 -33.53398 -32.94548 -31.79979 -31.05979 -28.44190 -28.34772 -27.77158 -26.19025 -25.04673 -24.09164 -23.46427 -22.76706 -22.04843 -20.89718 -20.49597 -19.35282 -18.52856 -18.31620 -18.23330 -17.62257 -17.57070 -17.15272 -17.03130 -16.30424 -16.11444 -15.96718 -15.84362 -15.55739 -15.48781 -15.42501 -15.08362 -14.89786 -14.68147 -14.57420 -14.33143 -14.04808 -13.80419 -13.65309 -13.42910 -13.40351 -13.26547 -13.14526 -13.03199 -12.96660 -12.90659 -12.64443 -12.55262 -12.30952 -12.12451 -12.07963 -12.04203 -11.64626 -11.47269 -11.41167 -11.30479 -11.04871 -10.86503 -10.76756 -10.64159 -10.52862 -8.74364 -4.87397 -0.07182 0.12129 1.17310 1.33028 1.63780 1.66900 2.00529 2.01987 2.55280 3.04183 3.27827 3.42207 3.45424 3.61016 3.63439 3.64194 3.68069 3.74468 3.85166 3.86930 3.91575 4.00504 4.04066 4.14296 4.28407 4.39093 4.45719 4.47245 4.49492 4.53260 4.53807 4.55017 4.70154 4.72770 4.75098 4.75570 4.78409 4.82711 4.83525 4.89285 4.95978 5.00442 5.07987 5.08165 5.10735 5.18363 5.19080 5.22161 5.24108 5.31972 5.38853 5.48571 5.55989 5.98961 6.18895 6.51171 6.78842 6.96809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.107 3.893 3 C -0.138 4.138 4 C -0.180 4.180 5 O -0.354 6.354 6 C 0.463 3.537 7 O -0.529 6.529 8 C -0.077 4.077 9 H 0.123 0.877 10 C -0.098 4.098 11 C -0.107 4.107 12 C -0.095 4.095 13 H 0.076 0.924 14 C 0.142 3.858 15 N -0.714 5.714 16 C 0.382 3.618 17 N -0.526 5.526 18 C 0.147 3.853 19 C -0.205 4.205 20 C -0.069 4.069 21 O -0.550 6.550 22 Si 0.767 3.233 23 C -0.041 4.041 24 C -0.040 4.040 25 F -0.142 7.142 26 C -0.103 4.103 27 C -0.104 4.104 28 H 0.064 0.936 29 H 0.084 0.916 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.093 0.907 33 H 0.069 0.931 34 H 0.061 0.939 35 H 0.084 0.916 36 H 0.064 0.936 37 H 0.060 0.940 38 H 0.062 0.938 39 H 0.067 0.933 40 H 0.076 0.924 41 H 0.065 0.935 42 H 0.070 0.930 43 H 0.414 0.586 44 H 0.183 0.817 45 H 0.128 0.872 46 H 0.386 0.614 47 H -0.301 1.301 48 H -0.275 1.275 49 H 0.153 0.847 50 H 0.082 0.918 51 H 0.081 0.919 52 H 0.083 0.917 53 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.074 4.748 2.590 5.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.071 3.929 3 C -0.195 4.195 4 C -0.237 4.237 5 O -0.271 6.271 6 C 0.308 3.692 7 O -0.419 6.419 8 C -0.096 4.096 9 H 0.141 0.859 10 C -0.136 4.136 11 C -0.145 4.145 12 C -0.114 4.114 13 H 0.094 0.906 14 C 0.019 3.981 15 N -0.348 5.348 16 C 0.143 3.857 17 N -0.243 5.243 18 C -0.010 4.010 19 C -0.210 4.210 20 C -0.178 4.178 21 O -0.358 6.358 22 Si 0.671 3.329 23 C -0.067 4.067 24 C -0.067 4.067 25 F -0.121 7.121 26 C -0.141 4.141 27 C -0.141 4.141 28 H 0.083 0.917 29 H 0.103 0.897 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.111 0.889 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.103 0.897 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.095 0.905 41 H 0.083 0.917 42 H 0.088 0.912 43 H 0.252 0.748 44 H 0.199 0.801 45 H 0.146 0.854 46 H 0.236 0.764 47 H -0.229 1.229 48 H -0.201 1.201 49 H 0.171 0.829 50 H 0.101 0.899 51 H 0.099 0.901 52 H 0.102 0.898 53 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.382 5.428 2.980 6.345 hybrid contribution -0.144 -1.799 -1.874 2.602 sum 1.238 3.630 1.105 3.991 Atomic orbital electron populations 1.22460 0.94165 1.03475 1.03677 1.22420 0.94426 0.93355 0.82678 1.21872 1.02446 0.91126 1.04046 1.22451 1.01812 1.01970 0.97461 1.86552 1.69660 1.25346 1.45529 1.24219 0.76580 0.80644 0.87805 1.90585 1.36442 1.70471 1.44362 1.21247 0.98881 0.95275 0.94215 0.85875 1.21366 1.00587 0.92530 0.99133 1.21563 0.94827 1.00301 0.97786 1.21406 0.95718 0.96587 0.97712 0.90567 1.21368 0.99601 0.78764 0.98356 1.44703 1.60334 1.08547 1.21176 1.18590 0.91302 0.86308 0.89458 1.67378 1.17102 1.37873 1.01982 1.22739 0.94126 0.88795 0.95353 1.20890 1.05000 0.96252 0.98867 1.25056 0.98508 0.94268 0.99973 1.86589 1.32509 1.34952 1.81718 0.94110 0.82831 0.80787 0.75145 1.21443 0.94017 1.00166 0.91046 1.18166 1.05805 0.93423 0.89267 1.91463 1.76990 1.90946 1.52716 1.21464 1.01488 0.93090 0.98051 1.21480 0.91004 1.02154 0.99505 0.91680 0.89670 0.92010 0.91132 0.88861 0.91159 0.92041 0.89702 0.91678 0.92125 0.91900 0.91478 0.90519 0.91718 0.91192 0.74778 0.80109 0.85419 0.76432 1.22916 1.20099 0.82896 0.89945 0.90076 0.89830 0.92029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.45 8.37 71.98 0.60 0.15 16 2 C 0.11 0.22 1.13 -10.79 -0.01 0.21 16 3 C -0.14 0.34 8.85 71.98 0.64 0.97 16 4 C -0.18 -0.44 8.37 71.98 0.60 0.17 16 5 O -0.35 -1.32 9.79 -51.32 -0.50 -1.83 16 6 C 0.46 1.97 6.57 71.24 0.47 2.43 16 7 O -0.53 -5.08 11.48 21.98 0.25 -4.83 16 8 C -0.08 0.15 2.63 -11.54 -0.03 0.12 16 9 H 0.12 -0.59 8.14 -2.39 -0.02 -0.61 16 10 C -0.10 0.13 4.49 30.59 0.14 0.27 16 11 C -0.11 0.51 5.08 30.59 0.16 0.66 16 12 C -0.10 0.55 2.23 -10.79 -0.02 0.52 16 13 H 0.08 -0.35 8.14 -2.39 -0.02 -0.37 16 14 C 0.14 -0.49 5.09 86.38 0.44 -0.05 16 15 N -0.71 0.37 5.44 -344.81 -1.87 -1.51 16 16 C 0.38 1.15 7.49 133.08 1.00 2.14 16 17 N -0.53 -1.36 9.57 -193.03 -1.85 -3.21 16 18 C 0.15 -0.14 9.83 84.61 0.83 0.69 16 19 C -0.20 0.22 5.36 -19.76 -0.11 0.11 16 20 C -0.07 0.19 2.82 71.24 0.20 0.39 16 21 O -0.55 -0.41 12.84 -148.98 -1.91 -2.33 16 22 Si 0.77 -3.45 29.91 68.60 2.05 -1.40 16 23 C -0.04 -0.06 9.82 22.48 0.22 0.16 16 24 C -0.04 -0.15 7.35 22.58 0.17 0.02 16 25 F -0.14 -0.77 16.65 44.97 0.75 -0.02 16 26 C -0.10 0.72 5.20 30.61 0.16 0.88 16 27 C -0.10 0.46 5.14 30.61 0.16 0.62 16 28 H 0.06 0.11 8.14 -2.39 -0.02 0.09 16 29 H 0.08 -0.04 8.14 -2.39 -0.02 -0.06 16 30 H 0.06 0.45 5.89 -2.39 -0.01 0.43 16 31 H 0.07 -0.20 8.14 -2.39 -0.02 -0.21 16 32 H 0.09 -0.48 8.14 -2.39 -0.02 -0.50 16 33 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 34 H 0.06 0.44 5.89 -2.39 -0.01 0.43 16 35 H 0.08 -0.04 8.14 -2.39 -0.02 -0.06 16 36 H 0.06 0.10 8.14 -2.39 -0.02 0.08 16 37 H 0.06 0.08 8.10 -2.39 -0.02 0.06 16 38 H 0.06 0.07 8.10 -2.39 -0.02 0.05 16 39 H 0.07 -0.27 7.18 -2.39 -0.02 -0.29 16 40 H 0.08 -0.42 8.14 -2.39 -0.02 -0.44 16 41 H 0.06 -0.14 8.14 -2.39 -0.02 -0.16 16 42 H 0.07 -0.20 8.14 -2.39 -0.02 -0.22 16 43 H 0.41 -0.74 7.13 -92.71 -0.66 -1.40 16 44 H 0.18 -1.04 4.84 -2.91 -0.01 -1.05 16 45 H 0.13 -0.58 7.96 -2.39 -0.02 -0.60 16 46 H 0.39 -1.83 8.70 -74.05 -0.64 -2.47 16 47 H -0.30 -1.08 7.11 99.48 0.71 -0.38 16 48 H -0.27 0.39 7.01 99.48 0.70 1.09 16 49 H 0.15 -0.02 8.06 -2.91 -0.02 -0.05 16 50 H 0.08 -0.69 8.14 -2.39 -0.02 -0.71 16 51 H 0.08 -0.62 8.14 -2.39 -0.02 -0.64 16 52 H 0.08 -0.39 8.11 -2.39 -0.02 -0.40 16 53 H 0.06 -0.16 8.14 -2.39 -0.02 -0.18 16 Total: 0.00 -15.59 417.69 2.17 -13.42 By element: Atomic # 1 Polarization: -8.44 SS G_CDS: -0.35 Total: -8.79 kcal Atomic # 6 Polarization: 4.88 SS G_CDS: 5.60 Total: 10.48 kcal Atomic # 7 Polarization: -1.00 SS G_CDS: -3.72 Total: -4.72 kcal Atomic # 8 Polarization: -6.82 SS G_CDS: -2.16 Total: -8.98 kcal Atomic # 9 Polarization: -0.77 SS G_CDS: 0.75 Total: -0.02 kcal Atomic # 14 Polarization: -3.45 SS G_CDS: 2.05 Total: -1.40 kcal Total: -15.59 2.17 -13.42 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14037212_17656566.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.387 kcal (2) G-P(sol) polarization free energy of solvation -15.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds