Wall clock time and date at job start Mon Mar 8 2021 04:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52993 * 109.47267 * 2 1 4 4 C 1.52998 * 109.46712 * 239.99703 * 2 1 3 5 5 O 1.45199 * 109.46815 * 120.00176 * 2 1 3 6 6 C 1.34226 * 117.00280 * 59.99595 * 5 2 1 7 7 O 1.20823 * 120.00042 * 0.02562 * 6 5 2 8 8 C 1.50702 * 120.00043 * 179.97438 * 6 5 2 9 9 H 1.08996 * 109.46736 * 60.00175 * 8 6 5 10 10 C 1.52996 * 109.47194 * 180.02562 * 8 6 5 11 11 C 1.52997 * 109.47497 * 180.02562 * 10 8 6 12 12 C 1.52999 * 109.46729 * 300.00024 * 11 10 8 13 13 H 1.09007 * 109.47200 * 179.97438 * 12 11 10 14 14 N 1.46499 * 109.47155 * 299.99615 * 12 11 10 15 15 C 1.38405 * 119.99936 * 205.00188 * 14 12 11 16 16 N 1.32494 * 119.22088 * 359.73198 * 15 14 12 17 17 C 1.32272 * 120.74414 * 179.75955 * 16 15 14 18 18 C 1.38606 * 119.19379 * 0.50690 * 17 16 15 19 19 C 1.50706 * 120.72111 * 179.77270 * 18 17 16 20 20 O 1.42895 * 109.47230 * 244.97484 * 19 18 17 21 21 Si 1.86305 * 109.46954 * 4.97241 * 19 18 17 22 22 C 1.38603 * 118.56259 * 359.74450 * 18 17 16 23 23 N 1.32283 * 119.19111 * 0.02562 * 22 18 17 24 24 C 1.52995 * 109.47524 * 59.99759 * 12 11 10 25 25 C 1.52999 * 109.47042 * 300.00447 * 8 6 5 26 26 H 1.09005 * 109.46729 * 300.00330 * 1 2 3 27 27 H 1.08999 * 109.46940 * 59.99988 * 1 2 3 28 28 H 1.08996 * 109.47189 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47469 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.47126 * 300.00367 * 3 2 1 31 31 H 1.08996 * 109.47511 * 59.99860 * 3 2 1 32 32 H 1.08996 * 109.47439 * 300.00025 * 4 2 1 33 33 H 1.09004 * 109.46782 * 60.00182 * 4 2 1 34 34 H 1.08999 * 109.47124 * 179.97438 * 4 2 1 35 35 H 1.09005 * 109.47504 * 59.99928 * 10 8 6 36 36 H 1.09006 * 109.46787 * 300.00274 * 10 8 6 37 37 H 1.08993 * 109.47649 * 179.97438 * 11 10 8 38 38 H 1.09005 * 109.46964 * 59.99399 * 11 10 8 39 39 H 0.96999 * 119.99984 * 25.00030 * 14 12 11 40 40 H 1.07998 * 120.40684 * 180.27220 * 17 16 15 41 41 H 1.08997 * 109.47342 * 124.97018 * 19 18 17 42 42 H 0.96701 * 114.00253 * 180.02562 * 20 19 18 43 43 H 1.48500 * 109.99970 * 178.68026 * 21 19 18 44 44 H 1.48500 * 110.00118 * 300.00069 * 21 19 18 45 45 H 1.08000 * 120.40412 * 180.02562 * 22 18 17 46 46 H 1.09005 * 109.47314 * 59.99924 * 24 12 11 47 47 H 1.09001 * 109.47831 * 179.97438 * 24 12 11 48 48 H 1.09005 * 109.46887 * 299.99600 * 25 8 6 49 49 H 1.08992 * 109.47727 * 59.99716 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1855 6 6 1.6533 -1.9684 1.3379 7 8 0.9566 -2.5027 0.5079 8 6 2.1182 -2.7437 2.5436 9 1 1.7547 -2.2588 3.4496 10 6 1.5715 -4.1710 2.4741 11 6 2.0429 -4.9580 3.6985 12 6 3.5722 -4.9982 3.7210 13 1 3.9081 -5.5585 4.5936 14 7 4.0615 -5.6498 2.5036 15 6 5.3009 -6.2660 2.4989 16 7 6.0341 -6.2526 3.6024 17 6 7.2207 -6.8362 3.6328 18 6 7.6983 -7.4571 2.4894 19 6 9.0478 -8.1281 2.4841 20 8 9.9189 -7.4390 1.5851 21 14 9.7687 -8.0864 4.2015 22 6 6.9078 -7.4480 1.3509 23 7 5.7283 -6.8502 1.3892 24 6 4.1189 -3.5710 3.7906 25 6 3.6475 -2.7843 2.5653 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 3.1301 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6768 1.9563 0.8899 32 1 1.6766 -1.7489 -1.2492 33 1 1.6766 -0.2074 -2.1392 34 1 3.1300 -0.7210 -1.2495 35 1 1.9352 -4.6557 1.5680 36 1 0.4819 -4.1423 2.4584 37 1 1.6531 -5.9746 3.6492 38 1 1.6788 -4.4731 4.6043 39 1 3.5170 -5.6494 1.7009 40 1 7.8119 -6.8258 4.5366 41 1 8.9376 -9.1633 2.1614 42 1 10.8071 -7.8174 1.5305 43 1 11.0853 -8.7730 4.2165 44 1 9.9240 -6.6803 4.6532 45 1 7.2506 -7.9231 0.4437 46 1 3.7549 -3.0861 4.6964 47 1 5.2085 -3.5995 3.8071 48 1 4.0109 -3.2693 1.6592 49 1 4.0373 -1.7677 2.6146 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_14048280_12175864.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:50:46 Heat of formation + Delta-G solvation = -65.161684 kcal Electronic energy + Delta-G solvation = -30046.593069 eV Core-core repulsion = 25975.428145 eV Total energy + Delta-G solvation = -4071.164924 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.15501 -41.85764 -40.07091 -38.13892 -37.81053 -35.75708 -34.94834 -34.60734 -32.80163 -31.91268 -30.72828 -28.34852 -28.33961 -26.60283 -25.92246 -25.16912 -23.79202 -23.15972 -22.42583 -20.69258 -20.38458 -19.46033 -18.61580 -18.28348 -18.10267 -17.50418 -17.10877 -16.68276 -16.46079 -16.14130 -15.87042 -15.66378 -15.44505 -15.25137 -15.13736 -14.82129 -14.63581 -14.52230 -14.04842 -13.92269 -13.68265 -13.47793 -13.39319 -13.29108 -13.27674 -13.03276 -12.89930 -12.85344 -12.38072 -12.34243 -12.26320 -12.19352 -11.96118 -11.77581 -11.74304 -11.62437 -11.38622 -11.31521 -11.06829 -10.74436 -10.67962 -9.91860 -9.02200 -5.03628 0.15551 0.25654 1.21530 1.29440 1.52408 1.70625 1.89131 1.89376 2.84770 3.21297 3.34439 3.43867 3.54338 3.59661 3.68568 3.74397 3.78859 3.81586 3.89747 3.94001 3.95162 3.99904 4.08230 4.16570 4.26076 4.34785 4.35910 4.50019 4.54454 4.58161 4.59811 4.69794 4.75621 4.77668 4.85702 4.87987 4.88881 4.92140 4.96778 5.02033 5.07526 5.10489 5.19469 5.22800 5.29609 5.31850 5.34316 5.63948 5.87062 6.09802 6.38400 6.50280 6.90880 7.38443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.116 3.884 3 C -0.142 4.142 4 C -0.183 4.183 5 O -0.350 6.350 6 C 0.467 3.533 7 O -0.501 6.501 8 C -0.081 4.081 9 H 0.110 0.890 10 C -0.106 4.106 11 C -0.127 4.127 12 C 0.158 3.842 13 H 0.098 0.902 14 N -0.689 5.689 15 C 0.568 3.432 16 N -0.560 5.560 17 C 0.201 3.799 18 C -0.248 4.248 19 C -0.054 4.054 20 O -0.538 6.538 21 Si 0.677 3.323 22 C 0.224 3.776 23 N -0.571 5.571 24 C -0.129 4.129 25 C -0.110 4.110 26 H 0.061 0.939 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.061 0.939 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.413 0.587 40 H 0.166 0.834 41 H 0.077 0.923 42 H 0.381 0.619 43 H -0.258 1.258 44 H -0.252 1.252 45 H 0.168 0.832 46 H 0.079 0.921 47 H 0.075 0.925 48 H 0.067 0.933 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.523 -1.221 3.228 3.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.081 3.919 3 C -0.199 4.199 4 C -0.240 4.240 5 O -0.267 6.267 6 C 0.310 3.690 7 O -0.389 6.389 8 C -0.100 4.100 9 H 0.128 0.872 10 C -0.144 4.144 11 C -0.165 4.165 12 C 0.053 3.947 13 H 0.116 0.884 14 N -0.326 5.326 15 C 0.212 3.788 16 N -0.282 5.282 17 C 0.033 3.967 18 C -0.256 4.256 19 C -0.165 4.165 20 O -0.345 6.345 21 Si 0.577 3.423 22 C 0.056 3.944 23 N -0.292 5.292 24 C -0.167 4.167 25 C -0.147 4.147 26 H 0.080 0.920 27 H 0.091 0.909 28 H 0.102 0.898 29 H 0.086 0.914 30 H 0.098 0.902 31 H 0.086 0.914 32 H 0.102 0.898 33 H 0.091 0.909 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.105 0.895 39 H 0.252 0.748 40 H 0.183 0.817 41 H 0.095 0.905 42 H 0.229 0.771 43 H -0.183 1.183 44 H -0.177 1.177 45 H 0.185 0.815 46 H 0.097 0.903 47 H 0.094 0.906 48 H 0.086 0.914 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.577 -0.142 3.549 3.598 hybrid contribution 1.466 -0.242 -1.494 2.107 sum 0.889 -0.384 2.055 2.272 Atomic orbital electron populations 1.22493 0.93902 1.04707 1.02925 1.22216 0.94448 0.92341 0.82927 1.21864 1.02297 0.92495 1.03238 1.22491 1.01713 1.03106 0.96735 1.86549 1.69672 1.25309 1.45180 1.23636 0.77175 0.80674 0.87481 1.90590 1.35201 1.69968 1.43140 1.21167 0.98157 0.95597 0.95075 0.87178 1.21444 1.01718 0.92354 0.98834 1.21879 0.94039 1.01544 0.99072 1.21010 0.93163 0.93085 0.87452 0.88382 1.44373 1.14855 1.57811 1.15582 1.19402 0.87368 0.87067 0.84962 1.67941 1.07853 1.24364 1.28091 1.22762 0.90233 0.86842 0.96871 1.20592 0.98425 1.09093 0.97502 1.24405 0.90254 0.96832 1.05005 1.86594 1.26156 1.58162 1.63618 0.95258 0.84601 0.83384 0.79016 1.22787 0.86297 0.88363 0.96978 1.67984 1.17659 1.15924 1.27652 1.21971 1.01932 0.94860 0.97978 1.21501 0.91773 1.01741 0.99718 0.91962 0.90890 0.89842 0.91429 0.90204 0.91389 0.89837 0.90900 0.92005 0.91081 0.90268 0.90278 0.89536 0.74809 0.81721 0.90461 0.77112 1.18252 1.17699 0.81521 0.90277 0.90639 0.91431 0.90441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.23 8.37 37.16 0.31 0.08 16 2 C 0.12 0.17 1.13 -90.62 -0.10 0.07 16 3 C -0.14 0.04 8.85 37.15 0.33 0.37 16 4 C -0.18 -0.29 8.37 37.16 0.31 0.02 16 5 O -0.35 -0.80 9.79 -39.25 -0.38 -1.18 16 6 C 0.47 0.96 6.57 36.01 0.24 1.20 16 7 O -0.50 -2.04 11.48 -18.75 -0.22 -2.26 16 8 C -0.08 0.05 2.63 -91.77 -0.24 -0.19 16 9 H 0.11 -0.23 8.14 -51.93 -0.42 -0.65 16 10 C -0.11 0.12 4.32 -26.73 -0.12 0.01 16 11 C -0.13 0.31 5.61 -26.73 -0.15 0.16 16 12 C 0.16 -0.17 2.77 -67.93 -0.19 -0.36 16 13 H 0.10 -0.05 7.51 -51.92 -0.39 -0.44 16 14 N -0.69 -0.47 4.38 -55.80 -0.24 -0.71 16 15 C 0.57 1.61 8.40 -322.81 -2.71 -1.10 16 16 N -0.56 -1.39 9.21 -13.93 -0.13 -1.51 16 17 C 0.20 0.23 9.92 -17.23 -0.17 0.06 16 18 C -0.25 -0.25 5.40 -104.35 -0.56 -0.82 16 19 C -0.05 0.05 2.82 36.01 0.10 0.15 16 20 O -0.54 -0.18 12.82 -35.23 -0.45 -0.64 16 21 Si 0.68 -1.22 29.92 -169.99 -5.09 -6.30 16 22 C 0.22 0.44 10.99 -17.22 -0.19 0.25 16 23 N -0.57 -2.00 10.46 -13.93 -0.15 -2.14 16 24 C -0.13 0.14 5.62 -26.71 -0.15 -0.01 16 25 C -0.11 0.05 4.98 -26.71 -0.13 -0.08 16 26 H 0.06 0.06 8.14 -51.93 -0.42 -0.37 16 27 H 0.07 0.01 8.14 -51.93 -0.42 -0.41 16 28 H 0.08 0.25 5.89 -51.93 -0.31 -0.05 16 29 H 0.07 -0.02 8.14 -51.93 -0.42 -0.44 16 30 H 0.08 -0.12 8.14 -51.93 -0.42 -0.54 16 31 H 0.07 -0.03 8.14 -51.93 -0.42 -0.45 16 32 H 0.08 0.28 5.89 -51.93 -0.31 -0.02 16 33 H 0.07 0.03 8.14 -51.93 -0.42 -0.40 16 34 H 0.06 0.09 8.14 -51.93 -0.42 -0.33 16 35 H 0.07 -0.01 6.46 -51.93 -0.34 -0.35 16 36 H 0.08 -0.05 8.10 -51.93 -0.42 -0.47 16 37 H 0.08 -0.19 8.14 -51.93 -0.42 -0.61 16 38 H 0.09 -0.31 8.14 -51.93 -0.42 -0.74 16 39 H 0.41 0.20 6.98 -40.82 -0.28 -0.09 16 40 H 0.17 -0.20 5.04 -52.49 -0.26 -0.46 16 41 H 0.08 -0.22 7.96 -51.93 -0.41 -0.63 16 42 H 0.38 -1.37 8.74 45.56 0.40 -0.97 16 43 H -0.26 -0.07 7.11 56.52 0.40 0.33 16 44 H -0.25 -0.30 7.06 56.52 0.40 0.10 16 45 H 0.17 0.00 8.06 -52.49 -0.42 -0.43 16 46 H 0.08 -0.19 8.14 -51.93 -0.42 -0.61 16 47 H 0.07 0.05 8.14 -51.93 -0.42 -0.37 16 48 H 0.07 0.07 7.60 -51.93 -0.39 -0.32 16 49 H 0.08 -0.01 8.11 -51.93 -0.42 -0.43 16 LS Contribution 383.02 15.07 5.77 5.77 Total: 0.00 -7.18 383.02 -12.14 -19.33 By element: Atomic # 1 Polarization: -2.34 SS G_CDS: -7.83 Total: -10.17 kcal Atomic # 6 Polarization: 3.25 SS G_CDS: -3.43 Total: -0.18 kcal Atomic # 7 Polarization: -3.85 SS G_CDS: -0.52 Total: -4.37 kcal Atomic # 8 Polarization: -3.03 SS G_CDS: -1.05 Total: -4.08 kcal Atomic # 14 Polarization: -1.22 SS G_CDS: -5.09 Total: -6.30 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -7.18 -12.14 -19.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14048280_12175864.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.835 kcal (2) G-P(sol) polarization free energy of solvation -7.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds