Wall clock time and date at job start Mon Mar 8 2021 04:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52993 * 109.47267 * 2 1 4 4 C 1.52998 * 109.46712 * 239.99703 * 2 1 3 5 5 O 1.45199 * 109.46815 * 120.00176 * 2 1 3 6 6 C 1.34226 * 117.00280 * 59.99595 * 5 2 1 7 7 O 1.20823 * 120.00042 * 0.02562 * 6 5 2 8 8 C 1.50702 * 120.00043 * 179.97438 * 6 5 2 9 9 H 1.08996 * 109.46736 * 60.00175 * 8 6 5 10 10 C 1.52996 * 109.47194 * 180.02562 * 8 6 5 11 11 C 1.52997 * 109.47497 * 180.02562 * 10 8 6 12 12 C 1.52999 * 109.46729 * 300.00024 * 11 10 8 13 13 H 1.09007 * 109.47200 * 179.97438 * 12 11 10 14 14 N 1.46499 * 109.47155 * 299.99615 * 12 11 10 15 15 C 1.38405 * 119.99936 * 205.00188 * 14 12 11 16 16 N 1.32494 * 119.22088 * 359.73198 * 15 14 12 17 17 C 1.32272 * 120.74414 * 179.75955 * 16 15 14 18 18 C 1.38606 * 119.19379 * 0.50690 * 17 16 15 19 19 C 1.50706 * 120.72111 * 179.77270 * 18 17 16 20 20 O 1.42895 * 109.47230 * 244.97484 * 19 18 17 21 21 Si 1.86305 * 109.46954 * 4.97241 * 19 18 17 22 22 C 1.38603 * 118.56259 * 359.74450 * 18 17 16 23 23 N 1.32283 * 119.19111 * 0.02562 * 22 18 17 24 24 C 1.52995 * 109.47524 * 59.99759 * 12 11 10 25 25 C 1.52999 * 109.47042 * 300.00447 * 8 6 5 26 26 H 1.09005 * 109.46729 * 300.00330 * 1 2 3 27 27 H 1.08999 * 109.46940 * 59.99988 * 1 2 3 28 28 H 1.08996 * 109.47189 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47469 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.47126 * 300.00367 * 3 2 1 31 31 H 1.08996 * 109.47511 * 59.99860 * 3 2 1 32 32 H 1.08996 * 109.47439 * 300.00025 * 4 2 1 33 33 H 1.09004 * 109.46782 * 60.00182 * 4 2 1 34 34 H 1.08999 * 109.47124 * 179.97438 * 4 2 1 35 35 H 1.09005 * 109.47504 * 59.99928 * 10 8 6 36 36 H 1.09006 * 109.46787 * 300.00274 * 10 8 6 37 37 H 1.08993 * 109.47649 * 179.97438 * 11 10 8 38 38 H 1.09005 * 109.46964 * 59.99399 * 11 10 8 39 39 H 0.96999 * 119.99984 * 25.00030 * 14 12 11 40 40 H 1.07998 * 120.40684 * 180.27220 * 17 16 15 41 41 H 1.08997 * 109.47342 * 124.97018 * 19 18 17 42 42 H 0.96701 * 114.00253 * 180.02562 * 20 19 18 43 43 H 1.48500 * 109.99970 * 178.68026 * 21 19 18 44 44 H 1.48500 * 110.00118 * 300.00069 * 21 19 18 45 45 H 1.08000 * 120.40412 * 180.02562 * 22 18 17 46 46 H 1.09005 * 109.47314 * 59.99924 * 24 12 11 47 47 H 1.09001 * 109.47831 * 179.97438 * 24 12 11 48 48 H 1.09005 * 109.46887 * 299.99600 * 25 8 6 49 49 H 1.08992 * 109.47727 * 59.99716 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1855 6 6 1.6533 -1.9684 1.3379 7 8 0.9566 -2.5027 0.5079 8 6 2.1182 -2.7437 2.5436 9 1 1.7547 -2.2588 3.4496 10 6 1.5715 -4.1710 2.4741 11 6 2.0429 -4.9580 3.6985 12 6 3.5722 -4.9982 3.7210 13 1 3.9081 -5.5585 4.5936 14 7 4.0615 -5.6498 2.5036 15 6 5.3009 -6.2660 2.4989 16 7 6.0341 -6.2526 3.6024 17 6 7.2207 -6.8362 3.6328 18 6 7.6983 -7.4571 2.4894 19 6 9.0478 -8.1281 2.4841 20 8 9.9189 -7.4390 1.5851 21 14 9.7687 -8.0864 4.2015 22 6 6.9078 -7.4480 1.3509 23 7 5.7283 -6.8502 1.3892 24 6 4.1189 -3.5710 3.7906 25 6 3.6475 -2.7843 2.5653 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 3.1301 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6768 1.9563 0.8899 32 1 1.6766 -1.7489 -1.2492 33 1 1.6766 -0.2074 -2.1392 34 1 3.1300 -0.7210 -1.2495 35 1 1.9352 -4.6557 1.5680 36 1 0.4819 -4.1423 2.4584 37 1 1.6531 -5.9746 3.6492 38 1 1.6788 -4.4731 4.6043 39 1 3.5170 -5.6494 1.7009 40 1 7.8119 -6.8258 4.5366 41 1 8.9376 -9.1633 2.1614 42 1 10.8071 -7.8174 1.5305 43 1 11.0853 -8.7730 4.2165 44 1 9.9240 -6.6803 4.6532 45 1 7.2506 -7.9231 0.4437 46 1 3.7549 -3.0861 4.6964 47 1 5.2085 -3.5995 3.8071 48 1 4.0109 -3.2693 1.6592 49 1 4.0373 -1.7677 2.6146 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14048280_12175864.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:50:45 Heat of formation + Delta-G solvation = -59.452600 kcal Electronic energy + Delta-G solvation = -30046.345505 eV Core-core repulsion = 25975.428145 eV Total energy + Delta-G solvation = -4070.917360 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.24456 -41.97588 -40.06589 -38.18413 -37.88082 -35.81242 -35.04414 -34.72457 -32.82851 -31.84830 -30.72735 -28.46468 -28.37629 -26.61288 -25.99444 -25.22873 -23.73156 -23.20022 -22.46362 -20.72368 -20.44769 -19.51948 -18.58538 -18.35038 -18.17650 -17.61703 -17.19567 -16.71852 -16.50085 -16.16457 -15.91674 -15.70053 -15.46519 -15.31744 -15.16868 -14.82540 -14.70390 -14.57933 -14.04447 -13.91095 -13.66671 -13.47729 -13.37413 -13.29206 -13.22503 -13.05679 -12.99765 -12.93307 -12.51412 -12.31773 -12.29514 -12.23709 -11.96520 -11.88756 -11.78150 -11.60869 -11.45080 -11.38208 -11.06496 -10.85769 -10.64277 -10.00562 -9.07342 -4.90570 0.06851 0.14930 1.15026 1.32033 1.61846 1.64568 1.86311 1.97249 2.77017 3.16382 3.41738 3.42641 3.58166 3.63153 3.65768 3.66699 3.71680 3.76991 3.87780 3.91972 3.98954 4.06065 4.10836 4.19030 4.33948 4.40876 4.42787 4.49843 4.52019 4.57615 4.64237 4.67541 4.74233 4.78074 4.79746 4.83264 4.84774 4.95777 5.04530 5.05341 5.10484 5.13636 5.16675 5.21195 5.24220 5.29800 5.34601 5.53570 5.80681 6.05502 6.39952 6.64084 6.76469 7.27944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.107 3.893 3 C -0.139 4.139 4 C -0.180 4.180 5 O -0.356 6.356 6 C 0.463 3.537 7 O -0.526 6.526 8 C -0.075 4.075 9 H 0.132 0.868 10 C -0.101 4.101 11 C -0.117 4.117 12 C 0.158 3.842 13 H 0.096 0.904 14 N -0.686 5.686 15 C 0.554 3.446 16 N -0.570 5.570 17 C 0.192 3.808 18 C -0.250 4.250 19 C -0.061 4.061 20 O -0.561 6.561 21 Si 0.758 3.242 22 C 0.211 3.789 23 N -0.596 5.596 24 C -0.121 4.121 25 C -0.101 4.101 26 H 0.066 0.934 27 H 0.085 0.915 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.094 0.906 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.085 0.915 34 H 0.059 0.941 35 H 0.056 0.944 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.108 0.892 39 H 0.412 0.588 40 H 0.185 0.815 41 H 0.101 0.899 42 H 0.396 0.604 43 H -0.283 1.283 44 H -0.294 1.294 45 H 0.181 0.819 46 H 0.100 0.900 47 H 0.057 0.943 48 H 0.047 0.953 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.521 -1.126 4.211 4.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.072 3.928 3 C -0.196 4.196 4 C -0.238 4.238 5 O -0.273 6.273 6 C 0.307 3.693 7 O -0.415 6.415 8 C -0.094 4.094 9 H 0.150 0.850 10 C -0.139 4.139 11 C -0.154 4.154 12 C 0.054 3.946 13 H 0.114 0.886 14 N -0.323 5.323 15 C 0.197 3.803 16 N -0.292 5.292 17 C 0.025 3.975 18 C -0.258 4.258 19 C -0.171 4.171 20 O -0.371 6.371 21 Si 0.663 3.337 22 C 0.044 3.956 23 N -0.318 5.318 24 C -0.160 4.160 25 C -0.139 4.139 26 H 0.085 0.915 27 H 0.104 0.896 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.112 0.888 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.104 0.896 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.095 0.905 37 H 0.100 0.900 38 H 0.126 0.874 39 H 0.250 0.750 40 H 0.201 0.799 41 H 0.119 0.881 42 H 0.247 0.753 43 H -0.209 1.209 44 H -0.222 1.222 45 H 0.198 0.802 46 H 0.118 0.882 47 H 0.076 0.924 48 H 0.066 0.934 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.579 -0.062 4.527 4.564 hybrid contribution 1.518 -0.246 -1.843 2.400 sum 0.939 -0.308 2.684 2.860 Atomic orbital electron populations 1.22451 0.93812 1.03624 1.03754 1.22411 0.94646 0.93220 0.82542 1.21875 1.02250 0.91284 1.04150 1.22456 1.01524 1.02116 0.97664 1.86554 1.69737 1.25496 1.45562 1.24191 0.76615 0.80622 0.87862 1.90585 1.36394 1.70357 1.44158 1.21236 0.97805 0.95621 0.94691 0.84998 1.21398 1.01433 0.92118 0.98960 1.21835 0.92746 1.01671 0.99179 1.21111 0.94035 0.92791 0.86663 0.88593 1.44506 1.14249 1.57455 1.16097 1.19654 0.88068 0.87498 0.85080 1.67973 1.08421 1.24854 1.27995 1.23155 0.90104 0.86465 0.97769 1.20802 0.99190 1.08769 0.97051 1.24614 0.89188 0.97612 1.05684 1.86547 1.27451 1.59030 1.64054 0.94329 0.82500 0.79817 0.77103 1.23118 0.86150 0.88402 0.97972 1.67991 1.18638 1.16903 1.28277 1.21917 1.00770 0.94902 0.98417 1.21397 0.91861 1.01446 0.99212 0.91532 0.89643 0.91811 0.91497 0.88755 0.91015 0.91907 0.89568 0.92200 0.92544 0.90520 0.90046 0.87404 0.74980 0.79881 0.88129 0.75275 1.20929 1.22190 0.80221 0.88166 0.92447 0.93431 0.90656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.53 8.37 71.98 0.60 0.07 16 2 C 0.11 0.36 1.13 -10.79 -0.01 0.35 16 3 C -0.14 0.13 8.85 71.98 0.64 0.77 16 4 C -0.18 -0.76 8.37 71.98 0.60 -0.15 16 5 O -0.36 -1.87 9.79 -51.38 -0.50 -2.38 16 6 C 0.46 2.39 6.57 71.24 0.47 2.86 16 7 O -0.53 -5.20 11.48 21.97 0.25 -4.95 16 8 C -0.07 0.09 2.63 -11.54 -0.03 0.06 16 9 H 0.13 -0.70 8.14 -2.39 -0.02 -0.72 16 10 C -0.10 0.19 4.32 30.59 0.13 0.32 16 11 C -0.12 0.64 5.61 30.59 0.17 0.81 16 12 C 0.16 -0.32 2.77 44.99 0.12 -0.19 16 13 H 0.10 -0.10 7.51 -2.38 -0.02 -0.12 16 14 N -0.69 -1.76 4.38 -330.44 -1.45 -3.21 16 15 C 0.55 3.85 8.40 261.49 2.20 6.04 16 16 N -0.57 -3.28 9.21 -197.99 -1.82 -5.10 16 17 C 0.19 0.52 9.92 84.71 0.84 1.36 16 18 C -0.25 -0.57 5.40 -19.69 -0.11 -0.68 16 19 C -0.06 0.15 2.82 71.24 0.20 0.35 16 20 O -0.56 -0.26 12.82 -148.98 -1.91 -2.17 16 21 Si 0.76 -3.02 29.92 68.60 2.05 -0.97 16 22 C 0.21 1.00 10.99 84.71 0.93 1.93 16 23 N -0.60 -5.02 10.46 -197.99 -2.07 -7.09 16 24 C -0.12 0.26 5.62 30.61 0.17 0.43 16 25 C -0.10 0.03 4.98 30.61 0.15 0.18 16 26 H 0.07 0.12 8.14 -2.38 -0.02 0.10 16 27 H 0.08 0.00 8.14 -2.39 -0.02 -0.02 16 28 H 0.06 0.47 5.89 -2.39 -0.01 0.45 16 29 H 0.07 -0.05 8.14 -2.39 -0.02 -0.07 16 30 H 0.09 -0.37 8.14 -2.38 -0.02 -0.39 16 31 H 0.07 -0.11 8.14 -2.39 -0.02 -0.13 16 32 H 0.06 0.55 5.89 -2.39 -0.01 0.53 16 33 H 0.09 0.09 8.14 -2.38 -0.02 0.07 16 34 H 0.06 0.25 8.14 -2.39 -0.02 0.23 16 35 H 0.06 0.07 6.46 -2.38 -0.02 0.06 16 36 H 0.08 -0.08 8.10 -2.38 -0.02 -0.10 16 37 H 0.08 -0.43 8.14 -2.39 -0.02 -0.45 16 38 H 0.11 -0.99 8.14 -2.38 -0.02 -1.01 16 39 H 0.41 1.12 6.98 -92.71 -0.65 0.47 16 40 H 0.18 -0.44 5.04 -2.91 -0.01 -0.45 16 41 H 0.10 -0.71 7.96 -2.39 -0.02 -0.73 16 42 H 0.40 -3.01 8.74 -74.06 -0.65 -3.66 16 43 H -0.28 -0.06 7.11 99.48 0.71 0.65 16 44 H -0.29 -0.89 7.06 99.48 0.70 -0.19 16 45 H 0.18 0.11 8.06 -2.91 -0.02 0.09 16 46 H 0.10 -0.62 8.14 -2.38 -0.02 -0.64 16 47 H 0.06 0.12 8.14 -2.39 -0.02 0.11 16 48 H 0.05 0.19 7.60 -2.38 -0.02 0.17 16 49 H 0.07 0.02 8.11 -2.39 -0.02 0.00 16 Total: 0.00 -18.43 383.02 1.34 -17.09 By element: Atomic # 1 Polarization: -5.46 SS G_CDS: -0.29 Total: -5.75 kcal Atomic # 6 Polarization: 7.44 SS G_CDS: 7.08 Total: 14.52 kcal Atomic # 7 Polarization: -10.06 SS G_CDS: -5.34 Total: -15.40 kcal Atomic # 8 Polarization: -7.33 SS G_CDS: -2.16 Total: -9.49 kcal Atomic # 14 Polarization: -3.02 SS G_CDS: 2.05 Total: -0.97 kcal Total: -18.43 1.34 -17.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14048280_12175864.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.364 kcal (2) G-P(sol) polarization free energy of solvation -18.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds