Wall clock time and date at job start Mon Mar 8 2021 04:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.47023 * 2 1 4 4 C 1.52998 * 109.47421 * 239.99905 * 2 1 3 5 5 O 1.45198 * 109.46884 * 119.99573 * 2 1 3 6 6 C 1.34228 * 117.00112 * 60.00605 * 5 2 1 7 7 O 1.20826 * 119.99760 * 359.97438 * 6 5 2 8 8 C 1.50698 * 120.00095 * 179.97438 * 6 5 2 9 9 H 1.08998 * 109.47068 * 59.99950 * 8 6 5 10 10 C 1.53001 * 109.46923 * 179.97438 * 8 6 5 11 11 C 1.53006 * 109.47189 * 179.97438 * 10 8 6 12 12 C 1.52994 * 109.47204 * 300.00440 * 11 10 8 13 13 H 1.09001 * 109.47291 * 179.97438 * 12 11 10 14 14 N 1.46500 * 109.47033 * 299.99786 * 12 11 10 15 15 C 1.39003 * 120.00428 * 205.00088 * 14 12 11 16 16 N 1.32394 * 119.71094 * 180.02562 * 15 14 12 17 17 C 1.31971 * 121.62359 * 179.97438 * 16 15 14 18 18 C 1.38022 * 120.85817 * 0.02650 * 17 16 15 19 19 C 1.50701 * 120.33718 * 179.97438 * 18 17 16 20 20 O 1.42900 * 109.47038 * 119.99667 * 19 18 17 21 21 Si 1.86300 * 109.46893 * 359.97438 * 19 18 17 22 22 C 1.38884 * 119.32902 * 359.95003 * 18 17 16 23 23 C 1.38301 * 118.50607 * 0.05000 * 22 18 17 24 24 C 1.52999 * 109.47208 * 59.99371 * 12 11 10 25 25 C 1.52997 * 109.47668 * 300.00010 * 24 12 11 26 26 H 1.09000 * 109.47307 * 300.00327 * 1 2 3 27 27 H 1.09000 * 109.46772 * 60.00176 * 1 2 3 28 28 H 1.08991 * 109.46996 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47390 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47203 * 299.99560 * 3 2 1 31 31 H 1.09000 * 109.47346 * 59.99697 * 3 2 1 32 32 H 1.09001 * 109.46994 * 300.00027 * 4 2 1 33 33 H 1.09001 * 109.46709 * 60.00039 * 4 2 1 34 34 H 1.08996 * 109.47177 * 180.02562 * 4 2 1 35 35 H 1.09003 * 109.46997 * 59.99807 * 10 8 6 36 36 H 1.09001 * 109.47389 * 300.00191 * 10 8 6 37 37 H 1.08999 * 109.46924 * 179.97438 * 11 10 8 38 38 H 1.08997 * 109.46358 * 59.99991 * 11 10 8 39 39 H 0.97005 * 120.00124 * 25.00048 * 14 12 11 40 40 H 1.08000 * 119.56882 * 179.97438 * 17 16 15 41 41 H 1.08990 * 109.46842 * 239.99642 * 19 18 17 42 42 H 0.96706 * 114.00030 * 300.00241 * 20 19 18 43 43 H 1.48502 * 110.00301 * 58.68088 * 21 19 18 44 44 H 1.48502 * 109.99926 * 180.02562 * 21 19 18 45 45 H 1.07994 * 120.75067 * 180.02562 * 22 18 17 46 46 H 1.07993 * 120.45282 * 180.25532 * 23 22 18 47 47 H 1.09003 * 109.46833 * 60.00393 * 24 12 11 48 48 H 1.09008 * 109.46914 * 180.02562 * 24 12 11 49 49 H 1.09003 * 109.47004 * 300.00549 * 25 24 12 50 50 H 1.08997 * 109.47550 * 179.97438 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6534 -1.9683 1.3380 7 8 0.9561 -2.5025 0.5083 8 6 2.1183 -2.7436 2.5437 9 1 1.7548 -2.2587 3.4497 10 6 1.5707 -4.1706 2.4747 11 6 2.0432 -4.9579 3.6986 12 6 3.5724 -4.9989 3.7195 13 1 3.9090 -5.5594 4.5916 14 7 4.0601 -5.6507 2.5014 15 6 5.3044 -6.2702 2.4951 16 7 5.7396 -6.8570 1.3910 17 6 6.9147 -7.4557 1.3427 18 6 7.7371 -7.4916 2.4506 19 6 9.0764 -8.1791 2.3825 20 8 10.1110 -7.2359 2.6690 21 14 9.3289 -8.8790 0.6745 22 6 7.3180 -6.8873 3.6287 23 6 6.0817 -6.2677 3.6492 24 6 4.1200 -3.5719 3.7884 25 6 3.6476 -2.7846 2.5645 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 3.1300 1.4426 0.0005 30 1 1.6768 1.9564 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 1.6768 -1.7489 -1.2492 33 1 1.6768 -0.2074 -2.1392 34 1 3.1301 -0.7216 -1.2489 35 1 1.9338 -4.6557 1.5687 36 1 0.4812 -4.1413 2.4595 37 1 1.6527 -5.9744 3.6497 38 1 1.6803 -4.4729 4.6048 39 1 3.5146 -5.6500 1.6993 40 1 7.2367 -7.9245 0.4245 41 1 9.1080 -8.9864 3.1140 42 1 10.1425 -6.4883 2.0563 43 1 9.2561 -7.7928 -0.3355 44 1 10.6461 -9.5602 0.5944 45 1 7.9431 -6.9012 4.5092 46 1 5.7265 -5.7844 4.5473 47 1 3.7571 -3.0869 4.6946 48 1 5.2096 -3.6011 3.8028 49 1 4.0104 -3.2696 1.6583 50 1 4.0373 -1.7679 2.6139 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_14048280_13915762.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:50:49 Heat of formation + Delta-G solvation = -84.167596 kcal Electronic energy + Delta-G solvation = -29928.844697 eV Core-core repulsion = 25922.281525 eV Total energy + Delta-G solvation = -4006.563171 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 335.193 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.09694 -41.44457 -40.04591 -38.12789 -37.75234 -35.66359 -34.94345 -33.44411 -32.24845 -31.83631 -30.41326 -28.37732 -28.36830 -26.40833 -25.53904 -24.69526 -23.78046 -22.94856 -22.34966 -20.63920 -20.37456 -18.81985 -18.52368 -18.22934 -17.60356 -17.44972 -16.93282 -16.55245 -16.39037 -16.23857 -15.81922 -15.71748 -15.52495 -15.26409 -14.81639 -14.80405 -14.60943 -14.34140 -14.01402 -13.97273 -13.72408 -13.55973 -13.48894 -13.35977 -13.18676 -13.05405 -12.93304 -12.88305 -12.47835 -12.41594 -12.36980 -12.26166 -11.98483 -11.92455 -11.74472 -11.50239 -11.34970 -11.07091 -10.81733 -10.70437 -10.50166 -10.31963 -8.68206 -4.93217 0.28239 0.46199 1.25309 1.32974 1.62418 1.66612 1.99549 2.08658 2.88840 3.35838 3.41749 3.41922 3.52762 3.62998 3.71086 3.76413 3.80380 3.83802 3.89367 3.91745 3.96420 4.01300 4.11304 4.15543 4.21066 4.26906 4.36478 4.51308 4.52737 4.57082 4.59148 4.62314 4.70499 4.72748 4.75503 4.77337 4.85162 4.85954 4.88181 4.94181 5.00419 5.04609 5.04975 5.10048 5.15583 5.26787 5.29188 5.33885 5.54876 5.60351 6.02953 6.43728 6.55353 6.86880 7.20150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.117 3.883 3 C -0.142 4.142 4 C -0.183 4.183 5 O -0.350 6.350 6 C 0.467 3.533 7 O -0.501 6.501 8 C -0.081 4.081 9 H 0.110 0.890 10 C -0.106 4.106 11 C -0.126 4.126 12 C 0.151 3.849 13 H 0.088 0.912 14 N -0.716 5.716 15 C 0.411 3.589 16 N -0.541 5.541 17 C 0.157 3.843 18 C -0.236 4.236 19 C -0.058 4.058 20 O -0.532 6.532 21 Si 0.677 3.323 22 C -0.005 4.005 23 C -0.240 4.240 24 C -0.135 4.135 25 C -0.108 4.108 26 H 0.061 0.939 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.061 0.939 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.405 0.595 40 H 0.154 0.846 41 H 0.116 0.884 42 H 0.375 0.625 43 H -0.259 1.259 44 H -0.256 1.256 45 H 0.135 0.865 46 H 0.134 0.866 47 H 0.079 0.921 48 H 0.074 0.926 49 H 0.070 0.930 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.719 1.206 2.718 3.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.081 3.919 3 C -0.199 4.199 4 C -0.241 4.241 5 O -0.267 6.267 6 C 0.310 3.690 7 O -0.388 6.388 8 C -0.100 4.100 9 H 0.128 0.872 10 C -0.143 4.143 11 C -0.163 4.163 12 C 0.045 3.955 13 H 0.106 0.894 14 N -0.349 5.349 15 C 0.175 3.825 16 N -0.257 5.257 17 C -0.001 4.001 18 C -0.241 4.241 19 C -0.169 4.169 20 O -0.338 6.338 21 Si 0.578 3.422 22 C -0.031 4.031 23 C -0.265 4.265 24 C -0.174 4.174 25 C -0.145 4.145 26 H 0.080 0.920 27 H 0.091 0.909 28 H 0.102 0.898 29 H 0.086 0.914 30 H 0.098 0.902 31 H 0.086 0.914 32 H 0.102 0.898 33 H 0.091 0.909 34 H 0.080 0.920 35 H 0.091 0.909 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.103 0.897 39 H 0.242 0.758 40 H 0.171 0.829 41 H 0.134 0.866 42 H 0.222 0.778 43 H -0.183 1.183 44 H -0.181 1.181 45 H 0.153 0.847 46 H 0.152 0.848 47 H 0.098 0.902 48 H 0.092 0.908 49 H 0.089 0.911 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.925 0.779 1.642 2.647 hybrid contribution 0.610 1.261 0.421 1.462 sum -1.315 2.040 2.062 3.185 Atomic orbital electron populations 1.22493 0.93897 1.04711 1.02945 1.22220 0.94451 0.92339 0.82900 1.21867 1.02294 0.92481 1.03255 1.22491 1.01711 1.03106 0.96742 1.86546 1.69691 1.25282 1.45210 1.23610 0.77228 0.80692 0.87461 1.90596 1.35123 1.69972 1.43127 1.21162 0.98119 0.95628 0.95102 0.87241 1.21440 1.01719 0.92316 0.98860 1.21834 0.93715 1.01676 0.99114 1.21043 0.94107 0.92829 0.87475 0.89427 1.44700 1.16424 1.58905 1.14868 1.18412 0.86351 0.88559 0.89212 1.67163 1.16888 1.14661 1.27037 1.22203 0.88250 0.92705 0.96896 1.20914 0.99575 1.07679 0.95928 1.24738 0.84551 0.94525 1.13088 1.86589 1.53275 1.37366 1.56604 0.95163 0.86505 0.85736 0.74762 1.21183 0.93755 0.90971 0.97212 1.21484 0.96983 1.09032 0.99016 1.22058 1.01692 0.95171 0.98470 1.21454 0.91827 1.01669 0.99598 0.91957 0.90872 0.89846 0.91423 0.90180 0.91396 0.89845 0.90873 0.91996 0.90923 0.90269 0.90175 0.89656 0.75753 0.82921 0.86606 0.77753 1.18345 1.18097 0.84730 0.84835 0.90206 0.90770 0.91148 0.90371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.17 8.37 37.16 0.31 0.14 16 2 C 0.12 0.12 1.13 -90.62 -0.10 0.02 16 3 C -0.14 0.10 8.85 37.16 0.33 0.43 16 4 C -0.18 -0.22 8.37 37.16 0.31 0.09 16 5 O -0.35 -0.61 9.79 -39.25 -0.38 -1.00 16 6 C 0.47 0.71 6.56 36.00 0.24 0.95 16 7 O -0.50 -1.83 11.48 -18.75 -0.22 -2.05 16 8 C -0.08 0.11 2.63 -91.77 -0.24 -0.13 16 9 H 0.11 -0.30 8.14 -51.93 -0.42 -0.73 16 10 C -0.11 0.19 4.32 -26.73 -0.12 0.07 16 11 C -0.13 0.42 5.61 -26.73 -0.15 0.27 16 12 C 0.15 -0.42 2.47 -67.93 -0.17 -0.59 16 13 H 0.09 -0.29 6.45 -51.93 -0.34 -0.62 16 14 N -0.72 0.46 4.40 -53.93 -0.24 0.22 16 15 C 0.41 0.53 7.63 -155.02 -1.18 -0.65 16 16 N -0.54 -1.49 10.39 -12.44 -0.13 -1.62 16 17 C 0.16 0.20 9.84 -17.57 -0.17 0.03 16 18 C -0.24 -0.13 5.40 -104.46 -0.56 -0.70 16 19 C -0.06 0.01 2.84 36.01 0.10 0.11 16 20 O -0.53 -0.66 12.78 -35.23 -0.45 -1.11 16 21 Si 0.68 -0.45 29.82 -169.99 -5.07 -5.52 16 22 C -0.01 0.00 9.77 -39.32 -0.38 -0.39 16 23 C -0.24 -0.04 8.83 -39.22 -0.35 -0.39 16 24 C -0.14 0.39 5.52 -26.73 -0.15 0.24 16 25 C -0.11 0.17 4.98 -26.73 -0.13 0.04 16 26 H 0.06 0.04 8.14 -51.93 -0.42 -0.39 16 27 H 0.07 -0.01 8.14 -51.93 -0.42 -0.44 16 28 H 0.08 0.22 5.89 -51.93 -0.31 -0.08 16 29 H 0.07 -0.05 8.14 -51.93 -0.42 -0.47 16 30 H 0.08 -0.15 8.14 -51.93 -0.42 -0.57 16 31 H 0.07 -0.06 8.14 -51.93 -0.42 -0.48 16 32 H 0.08 0.25 5.89 -51.93 -0.31 -0.06 16 33 H 0.07 0.00 8.14 -51.93 -0.42 -0.42 16 34 H 0.06 0.07 8.14 -51.93 -0.42 -0.36 16 35 H 0.07 -0.04 6.46 -51.93 -0.34 -0.38 16 36 H 0.08 -0.09 8.10 -51.93 -0.42 -0.51 16 37 H 0.08 -0.25 8.14 -51.93 -0.42 -0.67 16 38 H 0.08 -0.38 8.14 -51.93 -0.42 -0.81 16 39 H 0.41 -0.07 6.99 -40.82 -0.29 -0.35 16 40 H 0.15 -0.08 4.88 -52.49 -0.26 -0.33 16 41 H 0.12 -0.10 7.96 -51.93 -0.41 -0.51 16 42 H 0.37 -0.50 8.70 45.56 0.40 -0.10 16 43 H -0.26 -0.36 7.11 56.52 0.40 0.04 16 44 H -0.26 -0.66 7.11 56.52 0.40 -0.26 16 45 H 0.13 -0.09 8.06 -52.49 -0.42 -0.51 16 46 H 0.13 -0.23 6.07 -52.49 -0.32 -0.55 16 47 H 0.08 -0.33 8.14 -51.93 -0.42 -0.75 16 48 H 0.07 -0.15 7.65 -51.92 -0.40 -0.55 16 49 H 0.07 0.00 7.60 -51.93 -0.39 -0.39 16 50 H 0.08 -0.10 8.11 -51.93 -0.42 -0.52 16 LS Contribution 384.37 15.07 5.79 5.79 Total: 0.00 -6.31 384.37 -11.17 -17.49 By element: Atomic # 1 Polarization: -3.69 SS G_CDS: -8.06 Total: -11.76 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: -2.42 Total: -0.45 kcal Atomic # 7 Polarization: -1.03 SS G_CDS: -0.37 Total: -1.40 kcal Atomic # 8 Polarization: -3.11 SS G_CDS: -1.05 Total: -4.16 kcal Atomic # 14 Polarization: -0.45 SS G_CDS: -5.07 Total: -5.52 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -6.31 -11.17 -17.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14048280_13915762.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.681 kcal (2) G-P(sol) polarization free energy of solvation -6.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds