Wall clock time and date at job start Mon Mar 8 2021 04:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.47023 * 2 1 4 4 C 1.52998 * 109.47421 * 239.99905 * 2 1 3 5 5 O 1.45198 * 109.46884 * 119.99573 * 2 1 3 6 6 C 1.34228 * 117.00112 * 60.00605 * 5 2 1 7 7 O 1.20826 * 119.99760 * 359.97438 * 6 5 2 8 8 C 1.50698 * 120.00095 * 179.97438 * 6 5 2 9 9 H 1.08998 * 109.47068 * 59.99950 * 8 6 5 10 10 C 1.53001 * 109.46923 * 179.97438 * 8 6 5 11 11 C 1.53006 * 109.47189 * 179.97438 * 10 8 6 12 12 C 1.52994 * 109.47204 * 300.00440 * 11 10 8 13 13 H 1.09001 * 109.47291 * 179.97438 * 12 11 10 14 14 N 1.46500 * 109.47033 * 299.99786 * 12 11 10 15 15 C 1.39003 * 120.00428 * 205.00088 * 14 12 11 16 16 N 1.32394 * 119.71094 * 180.02562 * 15 14 12 17 17 C 1.31971 * 121.62359 * 179.97438 * 16 15 14 18 18 C 1.38022 * 120.85817 * 0.02650 * 17 16 15 19 19 C 1.50701 * 120.33718 * 179.97438 * 18 17 16 20 20 O 1.42900 * 109.47038 * 119.99667 * 19 18 17 21 21 Si 1.86300 * 109.46893 * 359.97438 * 19 18 17 22 22 C 1.38884 * 119.32902 * 359.95003 * 18 17 16 23 23 C 1.38301 * 118.50607 * 0.05000 * 22 18 17 24 24 C 1.52999 * 109.47208 * 59.99371 * 12 11 10 25 25 C 1.52997 * 109.47668 * 300.00010 * 24 12 11 26 26 H 1.09000 * 109.47307 * 300.00327 * 1 2 3 27 27 H 1.09000 * 109.46772 * 60.00176 * 1 2 3 28 28 H 1.08991 * 109.46996 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47390 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47203 * 299.99560 * 3 2 1 31 31 H 1.09000 * 109.47346 * 59.99697 * 3 2 1 32 32 H 1.09001 * 109.46994 * 300.00027 * 4 2 1 33 33 H 1.09001 * 109.46709 * 60.00039 * 4 2 1 34 34 H 1.08996 * 109.47177 * 180.02562 * 4 2 1 35 35 H 1.09003 * 109.46997 * 59.99807 * 10 8 6 36 36 H 1.09001 * 109.47389 * 300.00191 * 10 8 6 37 37 H 1.08999 * 109.46924 * 179.97438 * 11 10 8 38 38 H 1.08997 * 109.46358 * 59.99991 * 11 10 8 39 39 H 0.97005 * 120.00124 * 25.00048 * 14 12 11 40 40 H 1.08000 * 119.56882 * 179.97438 * 17 16 15 41 41 H 1.08990 * 109.46842 * 239.99642 * 19 18 17 42 42 H 0.96706 * 114.00030 * 300.00241 * 20 19 18 43 43 H 1.48502 * 110.00301 * 58.68088 * 21 19 18 44 44 H 1.48502 * 109.99926 * 180.02562 * 21 19 18 45 45 H 1.07994 * 120.75067 * 180.02562 * 22 18 17 46 46 H 1.07993 * 120.45282 * 180.25532 * 23 22 18 47 47 H 1.09003 * 109.46833 * 60.00393 * 24 12 11 48 48 H 1.09008 * 109.46914 * 180.02562 * 24 12 11 49 49 H 1.09003 * 109.47004 * 300.00549 * 25 24 12 50 50 H 1.08997 * 109.47550 * 179.97438 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6534 -1.9683 1.3380 7 8 0.9561 -2.5025 0.5083 8 6 2.1183 -2.7436 2.5437 9 1 1.7548 -2.2587 3.4497 10 6 1.5707 -4.1706 2.4747 11 6 2.0432 -4.9579 3.6986 12 6 3.5724 -4.9989 3.7195 13 1 3.9090 -5.5594 4.5916 14 7 4.0601 -5.6507 2.5014 15 6 5.3044 -6.2702 2.4951 16 7 5.7396 -6.8570 1.3910 17 6 6.9147 -7.4557 1.3427 18 6 7.7371 -7.4916 2.4506 19 6 9.0764 -8.1791 2.3825 20 8 10.1110 -7.2359 2.6690 21 14 9.3289 -8.8790 0.6745 22 6 7.3180 -6.8873 3.6287 23 6 6.0817 -6.2677 3.6492 24 6 4.1200 -3.5719 3.7884 25 6 3.6476 -2.7846 2.5645 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 3.1300 1.4426 0.0005 30 1 1.6768 1.9564 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 1.6768 -1.7489 -1.2492 33 1 1.6768 -0.2074 -2.1392 34 1 3.1301 -0.7216 -1.2489 35 1 1.9338 -4.6557 1.5687 36 1 0.4812 -4.1413 2.4595 37 1 1.6527 -5.9744 3.6497 38 1 1.6803 -4.4729 4.6048 39 1 3.5146 -5.6500 1.6993 40 1 7.2367 -7.9245 0.4245 41 1 9.1080 -8.9864 3.1140 42 1 10.1425 -6.4883 2.0563 43 1 9.2561 -7.7928 -0.3355 44 1 10.6461 -9.5602 0.5944 45 1 7.9431 -6.9012 4.5092 46 1 5.7265 -5.7844 4.5473 47 1 3.7571 -3.0869 4.6946 48 1 5.2096 -3.6011 3.8028 49 1 4.0104 -3.2696 1.6583 50 1 4.0373 -1.7679 2.6139 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14048280_13915762.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:50:48 Heat of formation + Delta-G solvation = -78.355137 kcal Electronic energy + Delta-G solvation = -29928.592650 eV Core-core repulsion = 25922.281525 eV Total energy + Delta-G solvation = -4006.311124 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 335.193 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.15145 -41.45627 -39.96725 -38.19612 -37.81940 -35.66141 -34.99185 -33.46356 -32.14943 -31.71783 -30.34780 -28.46821 -28.37685 -26.40403 -25.50820 -24.69161 -23.63408 -22.93407 -22.32857 -20.64925 -20.31706 -18.76548 -18.54691 -18.27823 -17.64246 -17.48783 -16.99489 -16.50239 -16.38546 -16.24195 -15.76812 -15.64048 -15.54200 -15.31062 -14.80922 -14.75556 -14.63488 -14.40041 -13.97718 -13.92174 -13.63984 -13.48974 -13.43002 -13.25855 -13.17746 -13.01622 -12.99839 -12.93211 -12.53030 -12.46258 -12.27048 -12.23575 -12.06043 -11.89186 -11.62327 -11.44994 -11.38815 -11.00075 -10.88553 -10.71309 -10.52498 -10.36228 -8.64811 -4.91856 0.26485 0.44461 1.15571 1.34050 1.59978 1.65092 1.95467 2.17255 2.86432 3.41686 3.45596 3.56198 3.64409 3.64689 3.67187 3.72182 3.80828 3.87573 3.97893 4.03598 4.04993 4.10145 4.14419 4.32302 4.33303 4.43438 4.45678 4.49908 4.51528 4.62259 4.67271 4.69578 4.74411 4.79095 4.79765 4.82257 4.83978 4.90611 5.04501 5.05939 5.06734 5.12586 5.16275 5.16710 5.21243 5.26973 5.29560 5.36434 5.53510 5.59552 6.09849 6.50136 6.55584 6.76772 7.19058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.108 3.892 3 C -0.139 4.139 4 C -0.180 4.180 5 O -0.356 6.356 6 C 0.461 3.539 7 O -0.527 6.527 8 C -0.075 4.075 9 H 0.131 0.869 10 C -0.102 4.102 11 C -0.117 4.117 12 C 0.150 3.850 13 H 0.101 0.899 14 N -0.714 5.714 15 C 0.398 3.602 16 N -0.571 5.571 17 C 0.144 3.856 18 C -0.236 4.236 19 C -0.060 4.060 20 O -0.548 6.548 21 Si 0.752 3.248 22 C -0.012 4.012 23 C -0.239 4.239 24 C -0.129 4.129 25 C -0.101 4.101 26 H 0.066 0.934 27 H 0.084 0.916 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.093 0.907 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.085 0.915 34 H 0.060 0.940 35 H 0.055 0.945 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.107 0.893 39 H 0.400 0.600 40 H 0.163 0.837 41 H 0.126 0.874 42 H 0.384 0.616 43 H -0.288 1.288 44 H -0.300 1.300 45 H 0.146 0.854 46 H 0.154 0.846 47 H 0.102 0.898 48 H 0.068 0.932 49 H 0.048 0.952 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.937 1.839 4.381 5.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.072 3.928 3 C -0.195 4.195 4 C -0.238 4.238 5 O -0.273 6.273 6 C 0.306 3.694 7 O -0.417 6.417 8 C -0.094 4.094 9 H 0.149 0.851 10 C -0.140 4.140 11 C -0.155 4.155 12 C 0.045 3.955 13 H 0.119 0.881 14 N -0.347 5.347 15 C 0.162 3.838 16 N -0.289 5.289 17 C -0.013 4.013 18 C -0.242 4.242 19 C -0.170 4.170 20 O -0.356 6.356 21 Si 0.658 3.342 22 C -0.037 4.037 23 C -0.263 4.263 24 C -0.167 4.167 25 C -0.139 4.139 26 H 0.085 0.915 27 H 0.103 0.897 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.112 0.888 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.104 0.896 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.090 0.910 37 H 0.098 0.902 38 H 0.125 0.875 39 H 0.237 0.763 40 H 0.179 0.821 41 H 0.144 0.856 42 H 0.233 0.767 43 H -0.214 1.214 44 H -0.228 1.228 45 H 0.164 0.836 46 H 0.172 0.828 47 H 0.120 0.880 48 H 0.087 0.913 49 H 0.067 0.933 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.161 1.425 3.325 4.214 hybrid contribution 0.679 1.099 -0.152 1.301 sum -1.482 2.524 3.173 4.317 Atomic orbital electron populations 1.22452 0.93916 1.03578 1.03738 1.22400 0.94567 0.93241 0.82561 1.21876 1.02299 0.91246 1.04127 1.22456 1.01575 1.02071 0.97660 1.86552 1.69738 1.25485 1.45515 1.24249 0.76610 0.80625 0.87924 1.90590 1.36415 1.70391 1.44272 1.21248 0.98184 0.95455 0.94507 0.85102 1.21390 1.01174 0.92266 0.99130 1.21805 0.93171 1.01511 0.98968 1.21216 0.94415 0.92875 0.86977 0.88133 1.44861 1.15803 1.58572 1.15421 1.18674 0.87071 0.88723 0.89351 1.67150 1.17764 1.15798 1.28194 1.22399 0.88252 0.92983 0.97620 1.20938 0.99571 1.07762 0.95895 1.24840 0.84039 0.94497 1.13620 1.86559 1.53680 1.38025 1.57331 0.94264 0.83725 0.83176 0.73045 1.21398 0.94045 0.90794 0.97498 1.21682 0.96695 1.08699 0.99273 1.22036 1.01312 0.94885 0.98500 1.21376 0.91495 1.01545 0.99497 0.91531 0.89690 0.91874 0.91401 0.88817 0.91021 0.91979 0.89623 0.92098 0.92661 0.90995 0.90249 0.87503 0.76345 0.82085 0.85584 0.76700 1.21439 1.22777 0.83596 0.82841 0.87988 0.91340 0.93273 0.90601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.44 8.37 71.98 0.60 0.16 16 2 C 0.11 0.28 1.13 -10.79 -0.01 0.27 16 3 C -0.14 0.24 8.85 71.98 0.64 0.88 16 4 C -0.18 -0.64 8.37 71.98 0.60 -0.03 16 5 O -0.36 -1.50 9.79 -51.40 -0.50 -2.00 16 6 C 0.46 1.93 6.56 71.24 0.47 2.40 16 7 O -0.53 -4.92 11.48 21.96 0.25 -4.67 16 8 C -0.08 0.21 2.63 -11.54 -0.03 0.18 16 9 H 0.13 -0.90 8.14 -2.39 -0.02 -0.92 16 10 C -0.10 0.32 4.32 30.60 0.13 0.45 16 11 C -0.12 0.91 5.61 30.59 0.17 1.08 16 12 C 0.15 -0.99 2.47 44.99 0.11 -0.87 16 13 H 0.10 -0.87 6.45 -2.39 -0.02 -0.88 16 14 N -0.71 0.65 4.40 -324.55 -1.43 -0.78 16 15 C 0.40 1.17 7.63 133.07 1.02 2.18 16 16 N -0.57 -3.72 10.39 -193.26 -2.01 -5.73 16 17 C 0.14 0.48 9.84 84.62 0.83 1.31 16 18 C -0.24 -0.28 5.40 -19.76 -0.11 -0.38 16 19 C -0.06 0.02 2.84 71.24 0.20 0.22 16 20 O -0.55 -1.34 12.78 -148.98 -1.90 -3.25 16 21 Si 0.75 -0.47 29.82 68.60 2.05 1.57 16 22 C -0.01 0.00 9.77 22.44 0.22 0.22 16 23 C -0.24 0.06 8.83 22.50 0.20 0.26 16 24 C -0.13 0.90 5.52 30.59 0.17 1.07 16 25 C -0.10 0.31 4.98 30.59 0.15 0.47 16 26 H 0.07 0.09 8.14 -2.39 -0.02 0.07 16 27 H 0.08 -0.03 8.14 -2.39 -0.02 -0.05 16 28 H 0.06 0.44 5.89 -2.39 -0.01 0.43 16 29 H 0.07 -0.11 8.14 -2.39 -0.02 -0.13 16 30 H 0.09 -0.43 8.14 -2.39 -0.02 -0.45 16 31 H 0.07 -0.17 8.14 -2.39 -0.02 -0.19 16 32 H 0.06 0.51 5.89 -2.39 -0.01 0.49 16 33 H 0.08 0.04 8.14 -2.39 -0.02 0.02 16 34 H 0.06 0.20 8.14 -2.39 -0.02 0.18 16 35 H 0.05 0.03 6.46 -2.39 -0.02 0.02 16 36 H 0.07 -0.11 8.10 -2.39 -0.02 -0.12 16 37 H 0.08 -0.55 8.14 -2.39 -0.02 -0.57 16 38 H 0.11 -1.23 8.14 -2.39 -0.02 -1.25 16 39 H 0.40 0.41 6.99 -92.70 -0.65 -0.24 16 40 H 0.16 -0.01 4.88 -2.91 -0.01 -0.02 16 41 H 0.13 -0.30 7.96 -2.39 -0.02 -0.32 16 42 H 0.38 -0.91 8.70 -74.05 -0.64 -1.56 16 43 H -0.29 -1.15 7.11 99.48 0.71 -0.45 16 44 H -0.30 -2.00 7.11 99.48 0.71 -1.30 16 45 H 0.15 -0.35 8.06 -2.91 -0.02 -0.37 16 46 H 0.15 -0.78 6.07 -2.91 -0.02 -0.80 16 47 H 0.10 -1.11 8.14 -2.39 -0.02 -1.13 16 48 H 0.07 -0.35 7.65 -2.38 -0.02 -0.37 16 49 H 0.05 0.07 7.60 -2.39 -0.02 0.05 16 50 H 0.08 -0.19 8.11 -2.39 -0.02 -0.21 16 Total: 0.00 -16.59 384.37 1.52 -15.07 By element: Atomic # 1 Polarization: -9.76 SS G_CDS: -0.30 Total: -10.07 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: 5.36 Total: 9.85 kcal Atomic # 7 Polarization: -3.07 SS G_CDS: -3.44 Total: -6.51 kcal Atomic # 8 Polarization: -7.76 SS G_CDS: -2.15 Total: -9.92 kcal Atomic # 14 Polarization: -0.47 SS G_CDS: 2.05 Total: 1.57 kcal Total: -16.59 1.52 -15.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14048280_13915762.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.283 kcal (2) G-P(sol) polarization free energy of solvation -16.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds