Wall clock time and date at job start Mon Mar 8 2021 04:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.47146 * 2 1 4 4 C 1.52994 * 109.46979 * 239.99838 * 2 1 3 5 5 O 1.45202 * 109.46758 * 119.99544 * 2 1 3 6 6 C 1.34230 * 116.99836 * 60.00621 * 5 2 1 7 7 O 1.20833 * 119.99930 * 359.97438 * 6 5 2 8 8 C 1.50697 * 120.00262 * 180.27336 * 6 5 2 9 9 H 1.09000 * 109.47461 * 59.71633 * 8 6 5 10 10 C 1.52996 * 109.47491 * 179.72204 * 8 6 5 11 11 C 1.53003 * 109.47301 * 179.97438 * 10 8 6 12 12 C 1.52996 * 109.46915 * 299.99916 * 11 10 8 13 13 H 1.09007 * 109.47078 * 179.97438 * 12 11 10 14 14 N 1.46496 * 109.47117 * 299.99845 * 12 11 10 15 15 C 1.38617 * 119.99825 * 204.99960 * 14 12 11 16 16 N 1.29684 * 124.94886 * 0.03174 * 15 14 12 17 17 C 1.32120 * 116.86516 * 179.97438 * 16 15 14 18 18 C 1.33322 * 114.58142 * 359.97438 * 17 16 15 19 19 C 1.50700 * 125.95773 * 180.02562 * 18 17 16 20 20 O 1.42906 * 109.47007 * 300.00455 * 19 18 17 21 21 Si 1.86300 * 109.47699 * 180.02562 * 19 18 17 22 22 S 1.70966 * 124.94901 * 179.71804 * 15 14 12 23 23 C 1.53003 * 109.47207 * 60.00200 * 12 11 10 24 24 C 1.53002 * 109.46796 * 299.72392 * 8 6 5 25 25 H 1.08998 * 109.47036 * 300.00110 * 1 2 3 26 26 H 1.08999 * 109.46711 * 59.99932 * 1 2 3 27 27 H 1.09001 * 109.47439 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47633 * 179.97438 * 3 2 1 29 29 H 1.08999 * 109.47371 * 299.99664 * 3 2 1 30 30 H 1.09005 * 109.47538 * 59.99436 * 3 2 1 31 31 H 1.09001 * 109.47516 * 299.99981 * 4 2 1 32 32 H 1.08999 * 109.47211 * 60.00536 * 4 2 1 33 33 H 1.09004 * 109.47317 * 180.02562 * 4 2 1 34 34 H 1.09004 * 109.47066 * 299.99799 * 10 8 6 35 35 H 1.08994 * 109.47405 * 59.99969 * 10 8 6 36 36 H 1.09008 * 109.46785 * 59.99617 * 11 10 8 37 37 H 1.09001 * 109.47245 * 179.97438 * 11 10 8 38 38 H 0.96997 * 120.00405 * 25.00090 * 14 12 11 39 39 H 1.08001 * 122.70992 * 179.97438 * 17 16 15 40 40 H 1.09000 * 109.46969 * 59.99926 * 19 18 17 41 41 H 0.96705 * 113.99260 * 299.99511 * 20 19 18 42 42 H 1.48501 * 110.00131 * 180.02562 * 21 19 18 43 43 H 1.48496 * 109.99738 * 301.32194 * 21 19 18 44 44 H 1.08994 * 109.47116 * 59.99825 * 23 12 11 45 45 H 1.09004 * 109.47205 * 179.97438 * 23 12 11 46 46 H 1.09008 * 109.46845 * 299.99275 * 24 8 6 47 47 H 1.08993 * 109.47452 * 60.00035 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6533 -1.9684 1.3379 7 8 0.9560 -2.5025 0.5082 8 6 2.1126 -2.7417 2.5471 9 1 1.7485 -2.2530 3.4508 10 6 1.5610 -4.1672 2.4805 11 6 2.0278 -4.9526 3.7079 12 6 3.5569 -4.9981 3.7329 13 1 3.8895 -5.5572 4.6075 14 7 4.0458 -5.6547 2.5180 15 6 5.2849 -6.2761 2.5169 16 7 6.0875 -6.3347 3.5338 17 6 7.2323 -6.9695 3.3550 18 6 7.4036 -7.4703 2.1313 19 6 8.6077 -8.2381 1.6499 20 8 9.7730 -7.4193 1.7674 21 14 8.3651 -8.7197 -0.1333 22 16 5.9743 -7.0836 1.1769 23 6 4.1085 -3.5725 3.7995 24 6 3.6417 -2.7872 2.5728 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 3.1301 1.4425 0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6767 -1.7489 -1.2492 32 1 1.6767 -0.2074 -2.1392 33 1 3.1300 -0.7217 -1.2490 34 1 0.4716 -4.1348 2.4622 35 1 1.9251 -4.6559 1.5769 36 1 1.6640 -4.4639 4.6118 37 1 1.6344 -5.9680 3.6607 38 1 3.5026 -5.6546 1.7144 39 1 7.9698 -7.0744 4.1370 40 1 8.7319 -9.1359 2.2554 41 1 9.7321 -6.6011 1.2535 42 1 9.5455 -9.4781 -0.6198 43 1 7.1385 -9.5448 -0.2742 44 1 3.7447 -3.0840 4.7034 45 1 5.1979 -3.6049 3.8178 46 1 4.0059 -3.2760 1.6690 47 1 4.0347 -1.7717 2.6202 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14048280_15704118.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:50:51 Heat of formation + Delta-G solvation = -70.972778 kcal Electronic energy + Delta-G solvation = -28372.896473 eV Core-core repulsion = 24456.057718 eV Total energy + Delta-G solvation = -3916.838755 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.10322 -40.92820 -39.83020 -38.09600 -37.72493 -35.59684 -34.92824 -32.02008 -31.73546 -30.65778 -28.42063 -28.33769 -26.63342 -25.64585 -24.47822 -23.73258 -22.61316 -21.51070 -20.56264 -19.92986 -19.70590 -18.27002 -17.99861 -17.59275 -17.33703 -16.95361 -16.53662 -16.19967 -16.04563 -15.71292 -15.58791 -15.39850 -15.01944 -14.95395 -14.79314 -14.64189 -14.07438 -13.99860 -13.63450 -13.44112 -13.36474 -13.20677 -13.06335 -12.96124 -12.89499 -12.82543 -12.48503 -12.46038 -12.28544 -12.23986 -12.02105 -11.92016 -11.64769 -11.42029 -11.38122 -11.02735 -10.83849 -10.75385 -10.27576 -10.15657 -8.71443 -5.11905 -0.03474 0.04186 0.68476 1.18350 1.26829 1.56746 1.67687 1.87472 2.00016 2.20128 3.43272 3.51720 3.59280 3.63120 3.69661 3.74237 3.76528 3.91732 3.94325 3.98399 4.06000 4.12126 4.34323 4.41778 4.43557 4.48778 4.54338 4.55867 4.66416 4.71920 4.72710 4.78137 4.80292 4.83761 4.88612 4.93663 5.06695 5.07496 5.09493 5.11684 5.20756 5.21735 5.25266 5.29083 5.31923 5.57086 5.89978 6.13808 6.72318 6.79836 7.01497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.108 3.892 3 C -0.139 4.139 4 C -0.180 4.180 5 O -0.355 6.355 6 C 0.464 3.536 7 O -0.525 6.525 8 C -0.077 4.077 9 H 0.127 0.873 10 C -0.100 4.100 11 C -0.118 4.118 12 C 0.160 3.840 13 H 0.083 0.917 14 N -0.680 5.680 15 C 0.322 3.678 16 N -0.572 5.572 17 C 0.107 3.893 18 C -0.309 4.309 19 C -0.011 4.011 20 O -0.549 6.549 21 Si 0.726 3.274 22 S 0.096 5.904 23 C -0.121 4.121 24 C -0.100 4.100 25 H 0.063 0.937 26 H 0.084 0.916 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.093 0.907 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.084 0.916 33 H 0.063 0.937 34 H 0.075 0.925 35 H 0.063 0.937 36 H 0.102 0.898 37 H 0.081 0.919 38 H 0.418 0.582 39 H 0.178 0.822 40 H 0.119 0.881 41 H 0.395 0.605 42 H -0.271 1.271 43 H -0.270 1.270 44 H 0.092 0.908 45 H 0.060 0.940 46 H 0.058 0.942 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.731 4.063 -0.630 4.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.072 3.928 3 C -0.196 4.196 4 C -0.237 4.237 5 O -0.273 6.273 6 C 0.309 3.691 7 O -0.414 6.414 8 C -0.095 4.095 9 H 0.145 0.855 10 C -0.138 4.138 11 C -0.156 4.156 12 C 0.053 3.947 13 H 0.101 0.899 14 N -0.321 5.321 15 C -0.049 4.049 16 N -0.298 5.298 17 C -0.044 4.044 18 C -0.432 4.432 19 C -0.124 4.124 20 O -0.357 6.357 21 Si 0.629 3.371 22 S 0.345 5.655 23 C -0.160 4.160 24 C -0.137 4.137 25 H 0.082 0.918 26 H 0.103 0.897 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.111 0.889 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.103 0.897 33 H 0.082 0.918 34 H 0.094 0.906 35 H 0.081 0.919 36 H 0.120 0.880 37 H 0.099 0.901 38 H 0.257 0.743 39 H 0.195 0.805 40 H 0.136 0.864 41 H 0.245 0.755 42 H -0.197 1.197 43 H -0.196 1.196 44 H 0.111 0.889 45 H 0.078 0.922 46 H 0.076 0.924 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.378 2.950 -1.472 4.065 hybrid contribution 0.258 -0.289 0.720 0.817 sum -2.121 2.661 -0.753 3.485 Atomic orbital electron populations 1.22461 0.94062 1.03610 1.03631 1.22399 0.94454 0.93223 0.82682 1.21879 1.02385 0.91358 1.04010 1.22455 1.01767 1.02113 0.97387 1.86559 1.69704 1.25448 1.45551 1.24131 0.76592 0.80624 0.87793 1.90589 1.36236 1.70369 1.44254 1.21234 0.98170 0.95601 0.94539 0.85500 1.21392 1.01437 0.92170 0.98819 1.21834 0.92792 1.01698 0.99280 1.21072 0.93999 0.92858 0.86753 0.89861 1.44375 1.13949 1.57708 1.16031 1.23923 0.92300 0.95392 0.93252 1.66492 1.05905 1.27705 1.29709 1.21446 0.93014 0.93825 0.96124 1.25633 1.02631 1.16900 0.98061 1.24165 0.82212 0.94946 1.11125 1.86478 1.37064 1.37776 1.74408 0.94125 0.78790 0.87210 0.76934 1.83928 1.13380 1.53195 1.14961 1.21873 1.00944 0.94683 0.98504 1.21380 0.91525 1.01600 0.99245 0.91757 0.89730 0.91747 0.91270 0.88855 0.91250 0.91732 0.89731 0.91789 0.90639 0.91872 0.87981 0.90081 0.74275 0.80479 0.86431 0.75543 1.19699 1.19645 0.88939 0.92153 0.92363 0.90483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.23 8.37 71.98 0.60 0.37 16 2 C 0.11 0.12 1.13 -10.80 -0.01 0.11 16 3 C -0.14 0.39 8.85 71.98 0.64 1.03 16 4 C -0.18 -0.23 8.37 71.98 0.60 0.38 16 5 O -0.36 -0.98 9.80 -51.41 -0.50 -1.48 16 6 C 0.46 1.10 6.56 71.23 0.47 1.56 16 7 O -0.53 -3.62 11.48 21.94 0.25 -3.37 16 8 C -0.08 0.28 2.63 -11.54 -0.03 0.25 16 9 H 0.13 -0.85 8.14 -2.39 -0.02 -0.87 16 10 C -0.10 0.46 4.32 30.59 0.13 0.59 16 11 C -0.12 0.82 5.61 30.59 0.17 0.99 16 12 C 0.16 -0.59 2.91 44.99 0.13 -0.46 16 13 H 0.08 -0.05 7.77 -2.38 -0.02 -0.07 16 14 N -0.68 1.32 4.38 -330.40 -1.45 -0.13 16 15 C 0.32 0.74 8.06 179.32 1.45 2.19 16 16 N -0.57 -3.15 9.90 -202.03 -2.00 -5.15 16 17 C 0.11 0.44 11.22 83.54 0.94 1.38 16 18 C -0.31 -0.59 5.74 24.57 0.14 -0.45 16 19 C -0.01 0.00 2.99 71.24 0.21 0.21 16 20 O -0.55 -0.32 12.87 -148.98 -1.92 -2.23 16 21 Si 0.73 -0.34 31.05 68.60 2.13 1.80 16 22 S 0.10 0.05 20.57 -56.49 -1.16 -1.11 16 23 C -0.12 0.48 5.62 30.58 0.17 0.66 16 24 C -0.10 0.36 4.98 30.58 0.15 0.52 16 25 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 26 H 0.08 -0.12 8.14 -2.39 -0.02 -0.14 16 27 H 0.06 0.35 5.89 -2.39 -0.01 0.34 16 28 H 0.07 -0.20 8.14 -2.39 -0.02 -0.22 16 29 H 0.09 -0.52 8.14 -2.39 -0.02 -0.54 16 30 H 0.07 -0.20 8.14 -2.38 -0.02 -0.22 16 31 H 0.06 0.35 5.89 -2.39 -0.01 0.33 16 32 H 0.08 -0.12 8.14 -2.39 -0.02 -0.14 16 33 H 0.06 0.04 8.14 -2.38 -0.02 0.02 16 34 H 0.07 -0.24 8.10 -2.38 -0.02 -0.25 16 35 H 0.06 -0.20 6.46 -2.39 -0.02 -0.22 16 36 H 0.10 -0.97 8.14 -2.38 -0.02 -0.99 16 37 H 0.08 -0.54 8.14 -2.39 -0.02 -0.56 16 38 H 0.42 -1.75 6.99 -92.71 -0.65 -2.40 16 39 H 0.18 0.42 8.06 -2.91 -0.02 0.40 16 40 H 0.12 0.09 7.96 -2.39 -0.02 0.07 16 41 H 0.39 -2.68 8.70 -74.05 -0.64 -3.33 16 42 H -0.27 -1.45 7.11 99.48 0.71 -0.75 16 43 H -0.27 -1.18 7.11 99.48 0.71 -0.47 16 44 H 0.09 -0.61 8.14 -2.39 -0.02 -0.63 16 45 H 0.06 0.02 8.14 -2.38 -0.02 0.00 16 46 H 0.06 -0.09 7.60 -2.38 -0.02 -0.11 16 47 H 0.08 -0.22 8.12 -2.39 -0.02 -0.24 16 Total: 0.00 -14.15 380.87 0.84 -13.31 By element: Atomic # 1 Polarization: -10.68 SS G_CDS: -0.27 Total: -10.95 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: 5.76 Total: 9.32 kcal Atomic # 7 Polarization: -1.83 SS G_CDS: -3.45 Total: -5.28 kcal Atomic # 8 Polarization: -4.92 SS G_CDS: -2.17 Total: -7.09 kcal Atomic # 14 Polarization: -0.34 SS G_CDS: 2.13 Total: 1.80 kcal Atomic # 16 Polarization: 0.05 SS G_CDS: -1.16 Total: -1.11 kcal Total: -14.15 0.84 -13.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14048280_15704118.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.667 kcal (2) G-P(sol) polarization free energy of solvation -14.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds