Wall clock time and date at job start Mon Mar 8 2021 04:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33322 * 125.95139 * 2 1 4 4 C 1.50699 * 122.71265 * 359.96060 * 3 2 1 5 5 O 1.42892 * 109.47249 * 329.74021 * 4 3 2 6 6 Si 1.86298 * 109.47032 * 209.73406 * 4 3 2 7 7 N 1.32126 * 114.57780 * 179.69641 * 3 2 1 8 8 C 1.29693 * 116.86491 * 0.26478 * 7 3 2 9 9 N 1.38607 * 124.94839 * 179.97438 * 8 7 3 10 10 C 1.46503 * 119.99915 * 180.02562 * 9 8 7 11 11 H 1.09000 * 109.47241 * 34.99788 * 10 9 8 12 12 C 1.53004 * 109.47179 * 155.00252 * 10 9 8 13 13 C 1.53000 * 109.47124 * 59.99943 * 12 10 9 14 14 C 1.52999 * 109.47194 * 59.99675 * 13 12 10 15 15 H 1.09001 * 109.46726 * 60.00098 * 14 13 12 16 16 C 1.50698 * 109.47292 * 179.97438 * 14 13 12 17 17 O 1.20829 * 119.99861 * 0.02562 * 16 14 13 18 18 O 1.34225 * 120.00228 * 179.97438 * 16 14 13 19 19 C 1.45203 * 117.00312 * 180.02562 * 18 16 14 20 20 C 1.53002 * 109.46792 * 60.00326 * 19 18 16 21 21 C 1.53000 * 109.47241 * 180.02562 * 19 18 16 22 22 C 1.52995 * 109.47058 * 300.00906 * 19 18 16 23 23 C 1.53004 * 109.47350 * 300.00187 * 14 13 12 24 24 C 1.53000 * 109.47009 * 60.00149 * 23 14 13 25 25 S 1.70969 * 110.10077 * 0.02562 * 8 7 3 26 26 H 1.08994 * 109.46869 * 89.99992 * 1 2 3 27 27 H 1.08997 * 109.47653 * 210.00786 * 1 2 3 28 28 H 1.08997 * 109.46817 * 330.00267 * 1 2 3 29 29 H 1.09004 * 109.46453 * 89.74089 * 4 3 2 30 30 H 0.96703 * 114.00176 * 299.99748 * 5 4 3 31 31 H 1.48506 * 109.99834 * 58.68765 * 6 4 3 32 32 H 1.48502 * 110.00011 * 180.02562 * 6 4 3 33 33 H 0.96999 * 119.99940 * 0.02562 * 9 8 7 34 34 H 1.08998 * 109.46883 * 179.97438 * 12 10 9 35 35 H 1.08999 * 109.46790 * 300.00316 * 12 10 9 36 36 H 1.08986 * 109.47281 * 180.02562 * 13 12 10 37 37 H 1.09001 * 109.47204 * 300.00066 * 13 12 10 38 38 H 1.09004 * 109.47029 * 59.99888 * 20 19 18 39 39 H 1.08995 * 109.46926 * 179.97438 * 20 19 18 40 40 H 1.09001 * 109.47029 * 300.00306 * 20 19 18 41 41 H 1.08998 * 109.46825 * 60.00561 * 21 19 18 42 42 H 1.09004 * 109.46729 * 180.02562 * 21 19 18 43 43 H 1.08997 * 109.47094 * 300.00015 * 21 19 18 44 44 H 1.09002 * 109.47834 * 59.99636 * 22 19 18 45 45 H 1.09003 * 109.47156 * 179.97438 * 22 19 18 46 46 H 1.09007 * 109.47301 * 299.99428 * 22 19 18 47 47 H 1.09007 * 109.46962 * 179.97438 * 23 14 13 48 48 H 1.09001 * 109.47134 * 299.99662 * 23 14 13 49 49 H 1.09003 * 109.47022 * 179.97438 * 24 23 14 50 50 H 1.09001 * 109.47570 * 59.99780 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2898 1.0793 0.0000 4 6 1.7415 2.4830 -0.0009 5 8 0.4847 2.5030 -0.6805 6 14 2.9367 3.6159 -0.8718 7 7 3.5851 0.8187 0.0064 8 6 3.9315 -0.4311 0.0064 9 7 5.2384 -0.8928 0.0120 10 6 5.5064 -2.3331 0.0109 11 1 4.7482 -2.8433 -0.5832 12 6 6.8881 -2.5942 -0.5924 13 6 7.9523 -1.8781 0.2415 14 6 7.9149 -2.4049 1.6775 15 1 8.1143 -3.4765 1.6766 16 6 8.9635 -1.6999 2.4987 17 8 9.6682 -0.8618 1.9880 18 8 9.1140 -2.0024 3.7977 19 6 10.1434 -1.2834 4.5271 20 6 9.8440 0.2165 4.4862 21 6 10.1658 -1.7601 5.9808 22 6 11.5052 -1.5493 3.8825 23 6 6.5332 -2.1437 2.2807 24 6 5.4690 -2.8600 1.4469 25 16 2.5412 -1.4262 -0.0030 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3634 -0.8899 0.5139 28 1 -0.3633 0.8900 0.5138 29 1 1.6044 2.8200 1.0266 30 1 0.5313 2.2144 -1.6022 31 1 3.1567 3.1487 -2.2642 32 1 2.4078 5.0036 -0.8789 33 1 5.9755 -0.2623 0.0167 34 1 7.0876 -3.6658 -0.5928 35 1 6.9147 -2.2188 -1.6153 36 1 8.9364 -2.0637 -0.1884 37 1 7.7529 -0.8065 0.2424 38 1 8.8737 0.4059 4.9454 39 1 10.6164 0.7562 5.0341 40 1 9.8282 0.5558 3.4505 41 1 10.3794 -2.8286 6.0094 42 1 10.9382 -1.2200 6.5283 43 1 9.1956 -1.5709 6.4401 44 1 11.4895 -1.2100 2.8467 45 1 12.2779 -1.0092 4.4297 46 1 11.7186 -2.6179 3.9115 47 1 6.5065 -2.5195 3.3036 48 1 6.3338 -1.0721 2.2816 49 1 4.4848 -2.6743 1.8769 50 1 5.6685 -3.9316 1.4460 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_14048280_15704122.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:50:54 Heat of formation + Delta-G solvation = -81.431364 kcal Electronic energy + Delta-G solvation = -30625.101839 eV Core-core repulsion = 26552.271947 eV Total energy + Delta-G solvation = -4072.829892 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 355.165 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.07849 -41.06803 -40.22758 -38.09052 -37.66457 -35.68354 -34.94264 -32.87610 -32.09176 -31.15239 -28.98445 -28.37583 -28.36563 -25.78687 -25.38950 -24.45079 -23.91391 -22.63190 -20.97999 -20.66827 -20.44068 -18.81521 -18.25389 -17.97273 -17.58202 -17.45757 -17.09404 -16.68678 -16.27121 -16.22018 -15.62176 -15.58234 -15.41052 -15.02838 -14.98604 -14.68078 -14.24448 -14.09054 -14.00954 -13.75437 -13.66939 -13.58727 -13.52396 -13.37920 -13.27802 -13.09198 -12.93617 -12.88397 -12.72523 -12.46396 -12.43820 -12.38586 -12.21652 -11.97302 -11.81278 -11.68503 -11.57578 -11.35197 -11.03977 -10.81910 -10.54562 -10.39867 -9.95922 -8.58682 -4.63561 0.06844 0.21867 0.82665 1.23919 1.42479 1.64995 1.85628 1.90494 2.00399 2.15073 3.31010 3.31226 3.34981 3.48861 3.57704 3.70293 3.73679 3.78739 3.83194 3.87748 3.93416 4.07637 4.16480 4.20264 4.21339 4.38242 4.43209 4.52014 4.56516 4.57393 4.59555 4.62884 4.72984 4.74333 4.78268 4.82344 4.85258 4.85353 4.88010 4.94163 4.97174 5.03836 5.05482 5.09857 5.16230 5.26749 5.29292 5.33074 5.59154 5.63049 6.27785 6.41498 6.85696 6.99943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.244 4.244 3 C 0.070 3.930 4 C -0.042 4.042 5 O -0.526 6.526 6 Si 0.720 3.280 7 N -0.540 5.540 8 C 0.323 3.677 9 N -0.687 5.687 10 C 0.149 3.851 11 H 0.086 0.914 12 C -0.124 4.124 13 C -0.106 4.106 14 C -0.081 4.081 15 H 0.110 0.890 16 C 0.467 3.533 17 O -0.500 6.500 18 O -0.349 6.349 19 C 0.117 3.883 20 C -0.183 4.183 21 C -0.142 4.142 22 C -0.184 4.184 23 C -0.108 4.108 24 C -0.136 4.136 25 S 0.097 5.903 26 H 0.067 0.933 27 H 0.059 0.941 28 H 0.091 0.909 29 H 0.124 0.876 30 H 0.375 0.625 31 H -0.268 1.268 32 H -0.261 1.261 33 H 0.412 0.588 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.062 0.938 39 H 0.072 0.928 40 H 0.083 0.917 41 H 0.067 0.933 42 H 0.079 0.921 43 H 0.067 0.933 44 H 0.083 0.917 45 H 0.072 0.928 46 H 0.061 0.939 47 H 0.080 0.920 48 H 0.071 0.929 49 H 0.075 0.925 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.486 -4.742 1.442 5.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.366 4.366 3 C -0.060 4.060 4 C -0.154 4.154 5 O -0.331 6.331 6 Si 0.620 3.380 7 N -0.267 5.267 8 C -0.048 4.048 9 N -0.329 5.329 10 C 0.043 3.957 11 H 0.104 0.896 12 C -0.162 4.162 13 C -0.144 4.144 14 C -0.101 4.101 15 H 0.128 0.872 16 C 0.310 3.690 17 O -0.388 6.388 18 O -0.267 6.267 19 C 0.081 3.919 20 C -0.241 4.241 21 C -0.199 4.199 22 C -0.241 4.241 23 C -0.146 4.146 24 C -0.175 4.175 25 S 0.345 5.655 26 H 0.086 0.914 27 H 0.078 0.922 28 H 0.109 0.891 29 H 0.142 0.858 30 H 0.223 0.777 31 H -0.192 1.192 32 H -0.187 1.187 33 H 0.252 0.748 34 H 0.107 0.893 35 H 0.100 0.900 36 H 0.099 0.901 37 H 0.092 0.908 38 H 0.081 0.919 39 H 0.091 0.909 40 H 0.102 0.898 41 H 0.086 0.914 42 H 0.098 0.902 43 H 0.086 0.914 44 H 0.101 0.899 45 H 0.091 0.909 46 H 0.080 0.920 47 H 0.099 0.901 48 H 0.090 0.910 49 H 0.094 0.906 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.929 -4.600 1.221 5.136 hybrid contribution -0.527 0.459 -0.532 0.878 sum 1.402 -4.141 0.689 4.426 Atomic orbital electron populations 1.20193 0.86563 1.03173 1.02518 1.25107 1.01271 0.92850 1.17415 1.20080 0.86875 0.97058 1.02034 1.24444 0.92044 0.95457 1.03479 1.86602 1.28678 1.89168 1.28694 0.93616 0.86160 0.76408 0.81792 1.65740 1.16954 1.16473 1.27517 1.23295 0.91848 0.91362 0.98300 1.44154 1.01690 1.07003 1.80082 1.21178 0.98344 0.79326 0.96821 0.89626 1.21822 0.92240 1.02298 0.99815 1.21442 1.00139 1.00746 0.92058 1.21159 0.93130 1.01591 0.94176 0.87172 1.23573 0.83354 0.80880 0.81157 1.90600 1.44461 1.31483 1.72242 1.86545 1.54747 1.62303 1.23087 1.22221 0.86183 0.91787 0.91694 1.22493 1.02558 0.94188 1.04813 1.21868 1.03311 1.02463 0.92268 1.22496 0.95529 1.02506 1.03536 1.21468 0.91304 1.02009 0.99830 1.22073 0.99889 1.00797 0.94777 1.83947 0.96607 1.10634 1.74275 0.91396 0.92181 0.89060 0.85846 0.77670 1.19234 1.18654 0.74769 0.89327 0.90000 0.90073 0.90833 0.91940 0.90885 0.89818 0.91407 0.90185 0.91393 0.89850 0.90868 0.91975 0.90113 0.90984 0.90625 0.89781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.02 8.95 36.01 0.32 0.30 16 2 C -0.24 -0.43 6.50 -36.02 -0.23 -0.67 16 3 C 0.07 0.17 5.92 -84.18 -0.50 -0.33 16 4 C -0.04 -0.06 2.82 36.01 0.10 0.04 16 5 O -0.53 -0.69 9.91 -35.23 -0.35 -1.04 16 6 Si 0.72 1.19 32.08 -169.99 -5.45 -4.27 16 7 N -0.54 -1.45 8.95 -11.36 -0.10 -1.56 16 8 C 0.32 0.39 8.22 -87.68 -0.72 -0.33 16 9 N -0.69 0.75 4.38 -55.78 -0.24 0.51 16 10 C 0.15 -0.45 2.73 -67.92 -0.19 -0.64 16 11 H 0.09 -0.26 7.26 -51.93 -0.38 -0.64 16 12 C -0.12 0.49 5.61 -26.73 -0.15 0.34 16 13 C -0.11 0.26 4.32 -26.73 -0.12 0.15 16 14 C -0.08 0.17 2.63 -91.77 -0.24 -0.07 16 15 H 0.11 -0.38 8.14 -51.93 -0.42 -0.80 16 16 C 0.47 0.42 6.57 36.00 0.24 0.66 16 17 O -0.50 -1.52 11.48 -18.75 -0.22 -1.74 16 18 O -0.35 -0.42 9.79 -39.24 -0.38 -0.81 16 19 C 0.12 0.07 1.13 -90.62 -0.10 -0.03 16 20 C -0.18 -0.13 8.37 37.16 0.31 0.18 16 21 C -0.14 0.15 8.85 37.16 0.33 0.47 16 22 C -0.18 -0.11 8.37 37.16 0.31 0.21 16 23 C -0.11 0.25 4.98 -26.73 -0.13 0.11 16 24 C -0.14 0.44 5.62 -26.73 -0.15 0.29 16 25 S 0.10 0.05 21.69 -107.50 -2.33 -2.28 16 26 H 0.07 -0.03 8.14 -51.93 -0.42 -0.45 16 27 H 0.06 -0.01 8.14 -51.93 -0.42 -0.43 16 28 H 0.09 0.08 6.63 -51.93 -0.34 -0.26 16 29 H 0.12 0.09 7.96 -51.93 -0.41 -0.33 16 30 H 0.38 -0.37 8.68 45.56 0.40 0.03 16 31 H -0.27 -1.17 7.11 56.52 0.40 -0.77 16 32 H -0.26 -1.02 7.11 56.52 0.40 -0.62 16 33 H 0.41 -0.47 6.99 -40.82 -0.29 -0.76 16 34 H 0.09 -0.45 8.14 -51.93 -0.42 -0.87 16 35 H 0.08 -0.30 8.14 -51.93 -0.42 -0.72 16 36 H 0.08 -0.15 8.10 -51.94 -0.42 -0.57 16 37 H 0.07 -0.11 6.46 -51.93 -0.34 -0.45 16 38 H 0.06 0.03 8.14 -51.93 -0.42 -0.39 16 39 H 0.07 -0.03 8.14 -51.93 -0.42 -0.45 16 40 H 0.08 0.20 5.89 -51.93 -0.31 -0.10 16 41 H 0.07 -0.08 8.14 -51.93 -0.42 -0.50 16 42 H 0.08 -0.17 8.14 -51.93 -0.42 -0.59 16 43 H 0.07 -0.07 8.14 -51.93 -0.42 -0.49 16 44 H 0.08 0.19 5.89 -51.93 -0.31 -0.12 16 45 H 0.07 -0.04 8.14 -51.93 -0.42 -0.46 16 46 H 0.06 0.02 8.14 -51.92 -0.42 -0.41 16 47 H 0.08 -0.16 8.12 -51.92 -0.42 -0.58 16 48 H 0.07 -0.06 7.60 -51.93 -0.39 -0.46 16 49 H 0.08 -0.17 8.04 -51.93 -0.42 -0.59 16 50 H 0.08 -0.38 8.14 -51.93 -0.42 -0.80 16 LS Contribution 397.56 15.07 5.99 5.99 Total: 0.00 -5.75 397.56 -12.33 -18.08 By element: Atomic # 1 Polarization: -5.25 SS G_CDS: -8.32 Total: -13.57 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: -0.92 Total: 0.68 kcal Atomic # 7 Polarization: -0.70 SS G_CDS: -0.35 Total: -1.04 kcal Atomic # 8 Polarization: -2.63 SS G_CDS: -0.95 Total: -3.58 kcal Atomic # 14 Polarization: 1.19 SS G_CDS: -5.45 Total: -4.27 kcal Atomic # 16 Polarization: 0.05 SS G_CDS: -2.33 Total: -2.28 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -5.75 -12.33 -18.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14048280_15704122.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.355 kcal (2) G-P(sol) polarization free energy of solvation -5.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds