Wall clock time and date at job start Mon Mar 8 2021 04:50:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33322 * 125.95139 * 2 1 4 4 C 1.50699 * 122.71265 * 359.96060 * 3 2 1 5 5 O 1.42892 * 109.47249 * 329.74021 * 4 3 2 6 6 Si 1.86298 * 109.47032 * 209.73406 * 4 3 2 7 7 N 1.32126 * 114.57780 * 179.69641 * 3 2 1 8 8 C 1.29693 * 116.86491 * 0.26478 * 7 3 2 9 9 N 1.38607 * 124.94839 * 179.97438 * 8 7 3 10 10 C 1.46503 * 119.99915 * 180.02562 * 9 8 7 11 11 H 1.09000 * 109.47241 * 34.99788 * 10 9 8 12 12 C 1.53004 * 109.47179 * 155.00252 * 10 9 8 13 13 C 1.53000 * 109.47124 * 59.99943 * 12 10 9 14 14 C 1.52999 * 109.47194 * 59.99675 * 13 12 10 15 15 H 1.09001 * 109.46726 * 60.00098 * 14 13 12 16 16 C 1.50698 * 109.47292 * 179.97438 * 14 13 12 17 17 O 1.20829 * 119.99861 * 0.02562 * 16 14 13 18 18 O 1.34225 * 120.00228 * 179.97438 * 16 14 13 19 19 C 1.45203 * 117.00312 * 180.02562 * 18 16 14 20 20 C 1.53002 * 109.46792 * 60.00326 * 19 18 16 21 21 C 1.53000 * 109.47241 * 180.02562 * 19 18 16 22 22 C 1.52995 * 109.47058 * 300.00906 * 19 18 16 23 23 C 1.53004 * 109.47350 * 300.00187 * 14 13 12 24 24 C 1.53000 * 109.47009 * 60.00149 * 23 14 13 25 25 S 1.70969 * 110.10077 * 0.02562 * 8 7 3 26 26 H 1.08994 * 109.46869 * 89.99992 * 1 2 3 27 27 H 1.08997 * 109.47653 * 210.00786 * 1 2 3 28 28 H 1.08997 * 109.46817 * 330.00267 * 1 2 3 29 29 H 1.09004 * 109.46453 * 89.74089 * 4 3 2 30 30 H 0.96703 * 114.00176 * 299.99748 * 5 4 3 31 31 H 1.48506 * 109.99834 * 58.68765 * 6 4 3 32 32 H 1.48502 * 110.00011 * 180.02562 * 6 4 3 33 33 H 0.96999 * 119.99940 * 0.02562 * 9 8 7 34 34 H 1.08998 * 109.46883 * 179.97438 * 12 10 9 35 35 H 1.08999 * 109.46790 * 300.00316 * 12 10 9 36 36 H 1.08986 * 109.47281 * 180.02562 * 13 12 10 37 37 H 1.09001 * 109.47204 * 300.00066 * 13 12 10 38 38 H 1.09004 * 109.47029 * 59.99888 * 20 19 18 39 39 H 1.08995 * 109.46926 * 179.97438 * 20 19 18 40 40 H 1.09001 * 109.47029 * 300.00306 * 20 19 18 41 41 H 1.08998 * 109.46825 * 60.00561 * 21 19 18 42 42 H 1.09004 * 109.46729 * 180.02562 * 21 19 18 43 43 H 1.08997 * 109.47094 * 300.00015 * 21 19 18 44 44 H 1.09002 * 109.47834 * 59.99636 * 22 19 18 45 45 H 1.09003 * 109.47156 * 179.97438 * 22 19 18 46 46 H 1.09007 * 109.47301 * 299.99428 * 22 19 18 47 47 H 1.09007 * 109.46962 * 179.97438 * 23 14 13 48 48 H 1.09001 * 109.47134 * 299.99662 * 23 14 13 49 49 H 1.09003 * 109.47022 * 179.97438 * 24 23 14 50 50 H 1.09001 * 109.47570 * 59.99780 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2898 1.0793 0.0000 4 6 1.7415 2.4830 -0.0009 5 8 0.4847 2.5030 -0.6805 6 14 2.9367 3.6159 -0.8718 7 7 3.5851 0.8187 0.0064 8 6 3.9315 -0.4311 0.0064 9 7 5.2384 -0.8928 0.0120 10 6 5.5064 -2.3331 0.0109 11 1 4.7482 -2.8433 -0.5832 12 6 6.8881 -2.5942 -0.5924 13 6 7.9523 -1.8781 0.2415 14 6 7.9149 -2.4049 1.6775 15 1 8.1143 -3.4765 1.6766 16 6 8.9635 -1.6999 2.4987 17 8 9.6682 -0.8618 1.9880 18 8 9.1140 -2.0024 3.7977 19 6 10.1434 -1.2834 4.5271 20 6 9.8440 0.2165 4.4862 21 6 10.1658 -1.7601 5.9808 22 6 11.5052 -1.5493 3.8825 23 6 6.5332 -2.1437 2.2807 24 6 5.4690 -2.8600 1.4469 25 16 2.5412 -1.4262 -0.0030 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3634 -0.8899 0.5139 28 1 -0.3633 0.8900 0.5138 29 1 1.6044 2.8200 1.0266 30 1 0.5313 2.2144 -1.6022 31 1 3.1567 3.1487 -2.2642 32 1 2.4078 5.0036 -0.8789 33 1 5.9755 -0.2623 0.0167 34 1 7.0876 -3.6658 -0.5928 35 1 6.9147 -2.2188 -1.6153 36 1 8.9364 -2.0637 -0.1884 37 1 7.7529 -0.8065 0.2424 38 1 8.8737 0.4059 4.9454 39 1 10.6164 0.7562 5.0341 40 1 9.8282 0.5558 3.4505 41 1 10.3794 -2.8286 6.0094 42 1 10.9382 -1.2200 6.5283 43 1 9.1956 -1.5709 6.4401 44 1 11.4895 -1.2100 2.8467 45 1 12.2779 -1.0092 4.4297 46 1 11.7186 -2.6179 3.9115 47 1 6.5065 -2.5195 3.3036 48 1 6.3338 -1.0721 2.2816 49 1 4.4848 -2.6743 1.8769 50 1 5.6685 -3.9316 1.4460 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14048280_15704122.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:50:53 Heat of formation + Delta-G solvation = -73.720944 kcal Electronic energy + Delta-G solvation = -30624.767491 eV Core-core repulsion = 26552.271947 eV Total energy + Delta-G solvation = -4072.495543 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 355.165 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.09666 -41.11519 -40.13389 -38.15114 -37.74226 -35.66518 -34.95825 -32.87524 -31.88150 -31.06223 -29.03726 -28.42657 -28.34120 -25.78814 -25.37819 -24.45476 -23.73509 -22.55994 -20.91333 -20.67028 -20.44587 -18.82456 -18.25367 -18.04584 -17.59063 -17.45731 -17.12112 -16.73250 -16.21855 -16.14189 -15.71875 -15.58268 -15.37047 -15.01122 -14.92482 -14.68112 -14.32052 -14.08969 -13.95539 -13.78890 -13.59270 -13.46846 -13.42519 -13.30259 -13.21596 -13.06060 -12.96515 -12.89632 -12.78533 -12.52302 -12.47190 -12.27598 -12.21927 -12.02987 -11.81258 -11.58235 -11.43815 -11.40443 -10.99490 -10.85084 -10.62550 -10.46686 -10.01117 -8.59745 -4.80777 0.00152 0.18144 0.75863 1.19456 1.28642 1.63936 1.68157 1.81584 1.98274 2.00468 3.28256 3.42556 3.49442 3.56318 3.66173 3.70045 3.75534 3.90713 3.93123 4.01956 4.05224 4.16880 4.29170 4.34027 4.35946 4.44308 4.53296 4.54463 4.55209 4.65884 4.71337 4.75804 4.78469 4.79624 4.81941 4.83487 4.88641 4.92309 5.07335 5.08053 5.09750 5.11532 5.16208 5.20284 5.24334 5.25058 5.29933 5.32764 5.57506 5.72164 6.29545 6.42508 6.80647 6.95272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C -0.260 4.260 3 C 0.057 3.943 4 C -0.039 4.039 5 O -0.532 6.532 6 Si 0.774 3.226 7 N -0.564 5.564 8 C 0.314 3.686 9 N -0.682 5.682 10 C 0.146 3.854 11 H 0.093 0.907 12 C -0.115 4.115 13 C -0.102 4.102 14 C -0.075 4.075 15 H 0.131 0.869 16 C 0.462 3.538 17 O -0.527 6.527 18 O -0.355 6.355 19 C 0.109 3.891 20 C -0.180 4.180 21 C -0.139 4.139 22 C -0.180 4.180 23 C -0.102 4.102 24 C -0.131 4.131 25 S 0.123 5.877 26 H 0.075 0.925 27 H 0.065 0.935 28 H 0.084 0.916 29 H 0.131 0.869 30 H 0.384 0.616 31 H -0.305 1.305 32 H -0.292 1.292 33 H 0.411 0.589 34 H 0.110 0.890 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.059 0.941 38 H 0.061 0.939 39 H 0.084 0.916 40 H 0.063 0.937 41 H 0.070 0.930 42 H 0.092 0.908 43 H 0.068 0.932 44 H 0.063 0.937 45 H 0.083 0.917 46 H 0.065 0.935 47 H 0.079 0.921 48 H 0.054 0.946 49 H 0.068 0.932 50 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.370 -6.515 1.887 6.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.383 4.383 3 C -0.073 4.073 4 C -0.151 4.151 5 O -0.338 6.338 6 Si 0.680 3.320 7 N -0.293 5.293 8 C -0.057 4.057 9 N -0.323 5.323 10 C 0.042 3.958 11 H 0.110 0.890 12 C -0.152 4.152 13 C -0.140 4.140 14 C -0.094 4.094 15 H 0.149 0.851 16 C 0.307 3.693 17 O -0.416 6.416 18 O -0.272 6.272 19 C 0.073 3.927 20 C -0.238 4.238 21 C -0.196 4.196 22 C -0.237 4.237 23 C -0.140 4.140 24 C -0.170 4.170 25 S 0.372 5.628 26 H 0.094 0.906 27 H 0.084 0.916 28 H 0.103 0.897 29 H 0.149 0.851 30 H 0.234 0.766 31 H -0.232 1.232 32 H -0.219 1.219 33 H 0.251 0.749 34 H 0.128 0.872 35 H 0.100 0.900 36 H 0.093 0.907 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.102 0.898 40 H 0.082 0.918 41 H 0.089 0.911 42 H 0.111 0.889 43 H 0.087 0.913 44 H 0.082 0.918 45 H 0.102 0.898 46 H 0.084 0.916 47 H 0.098 0.902 48 H 0.073 0.927 49 H 0.086 0.914 50 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 1.824 -6.400 1.680 6.864 hybrid contribution -0.443 1.007 -0.699 1.303 sum 1.381 -5.393 0.982 5.653 Atomic orbital electron populations 1.20183 0.85769 1.03136 1.02992 1.25362 1.02081 0.93403 1.17424 1.20184 0.87061 0.97478 1.02605 1.24411 0.91796 0.95153 1.03781 1.86579 1.28573 1.89195 1.29500 0.92928 0.85522 0.74025 0.79552 1.65736 1.17270 1.17442 1.28804 1.23549 0.92845 0.91390 0.97914 1.44359 1.00915 1.07924 1.79123 1.21360 0.99057 0.78148 0.97264 0.88955 1.21793 0.90875 1.03344 0.99236 1.21396 1.00371 1.00172 0.92090 1.21241 0.92171 1.02341 0.93671 0.85084 1.24203 0.83461 0.80547 0.81123 1.90595 1.45651 1.32706 1.72636 1.86551 1.54934 1.62390 1.23345 1.22386 0.86048 0.91628 0.92641 1.22456 1.02993 0.94686 1.03622 1.21876 1.03841 1.02786 0.91084 1.22457 0.95998 1.02782 1.02490 1.21388 0.91460 1.01065 1.00040 1.22056 0.98973 1.01895 0.94058 1.83745 0.95561 1.09506 1.73961 0.90633 0.91575 0.89693 0.85128 0.76636 1.23231 1.21940 0.74905 0.87183 0.89970 0.90710 0.92233 0.91949 0.89755 0.91835 0.91098 0.88913 0.91328 0.91810 0.89783 0.91614 0.90246 0.92735 0.91355 0.87581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.03 8.95 71.24 0.64 0.61 16 2 C -0.26 -0.94 6.50 24.58 0.16 -0.78 16 3 C 0.06 0.31 5.92 41.40 0.24 0.55 16 4 C -0.04 -0.14 2.82 71.24 0.20 0.06 16 5 O -0.53 -1.63 9.91 -148.98 -1.48 -3.10 16 6 Si 0.77 3.68 32.08 68.60 2.20 5.88 16 7 N -0.56 -3.47 8.95 -189.86 -1.70 -5.17 16 8 C 0.31 0.83 8.22 179.32 1.47 2.31 16 9 N -0.68 1.37 4.38 -330.38 -1.45 -0.08 16 10 C 0.15 -1.02 2.73 44.99 0.12 -0.90 16 11 H 0.09 -0.71 7.26 -2.39 -0.02 -0.73 16 12 C -0.11 1.03 5.61 30.60 0.17 1.20 16 13 C -0.10 0.50 4.32 30.59 0.13 0.63 16 14 C -0.08 0.33 2.63 -11.54 -0.03 0.30 16 15 H 0.13 -1.10 8.14 -2.39 -0.02 -1.12 16 16 C 0.46 1.20 6.57 71.24 0.47 1.67 16 17 O -0.53 -4.07 11.48 21.96 0.25 -3.82 16 18 O -0.35 -1.02 9.79 -51.37 -0.50 -1.52 16 19 C 0.11 0.17 1.13 -10.79 -0.01 0.16 16 20 C -0.18 -0.42 8.37 71.98 0.60 0.18 16 21 C -0.14 0.35 8.85 71.98 0.64 0.99 16 22 C -0.18 -0.29 8.37 71.98 0.60 0.31 16 23 C -0.10 0.48 4.98 30.60 0.15 0.63 16 24 C -0.13 1.00 5.62 30.60 0.17 1.18 16 25 S 0.12 0.08 21.69 -56.49 -1.23 -1.14 16 26 H 0.08 -0.09 8.14 -2.39 -0.02 -0.11 16 27 H 0.07 -0.06 8.14 -2.39 -0.02 -0.08 16 28 H 0.08 0.16 6.63 -2.39 -0.02 0.14 16 29 H 0.13 0.24 7.96 -2.38 -0.02 0.22 16 30 H 0.38 -0.54 8.68 -74.06 -0.64 -1.18 16 31 H -0.30 -3.34 7.11 99.48 0.71 -2.63 16 32 H -0.29 -2.80 7.11 99.48 0.71 -2.09 16 33 H 0.41 -0.59 6.99 -92.71 -0.65 -1.23 16 34 H 0.11 -1.39 8.14 -2.39 -0.02 -1.41 16 35 H 0.08 -0.68 8.14 -2.39 -0.02 -0.70 16 36 H 0.07 -0.24 8.10 -2.39 -0.02 -0.26 16 37 H 0.06 -0.11 6.46 -2.39 -0.02 -0.13 16 38 H 0.06 0.12 8.14 -2.38 -0.02 0.11 16 39 H 0.08 -0.04 8.14 -2.39 -0.02 -0.06 16 40 H 0.06 0.43 5.89 -2.39 -0.01 0.42 16 41 H 0.07 -0.21 8.14 -2.39 -0.02 -0.23 16 42 H 0.09 -0.48 8.14 -2.39 -0.02 -0.50 16 43 H 0.07 -0.17 8.14 -2.39 -0.02 -0.19 16 44 H 0.06 0.38 5.89 -2.39 -0.01 0.37 16 45 H 0.08 -0.08 8.14 -2.39 -0.02 -0.10 16 46 H 0.06 0.04 8.14 -2.38 -0.02 0.02 16 47 H 0.08 -0.33 8.12 -2.38 -0.02 -0.35 16 48 H 0.05 -0.05 7.60 -2.39 -0.02 -0.07 16 49 H 0.07 -0.37 8.04 -2.39 -0.02 -0.39 16 50 H 0.11 -1.23 8.14 -2.39 -0.02 -1.25 16 Total: 0.00 -14.92 397.56 1.53 -13.38 By element: Atomic # 1 Polarization: -13.23 SS G_CDS: -0.30 Total: -13.53 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: 5.74 Total: 9.10 kcal Atomic # 7 Polarization: -2.10 SS G_CDS: -3.15 Total: -5.24 kcal Atomic # 8 Polarization: -6.72 SS G_CDS: -1.73 Total: -8.44 kcal Atomic # 14 Polarization: 3.68 SS G_CDS: 2.20 Total: 5.88 kcal Atomic # 16 Polarization: 0.08 SS G_CDS: -1.23 Total: -1.14 kcal Total: -14.92 1.53 -13.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14048280_15704122.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.336 kcal (2) G-P(sol) polarization free energy of solvation -14.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds