Wall clock time and date at job start Mon Mar 8 2021 04:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47260 * 2 1 4 4 C 1.53001 * 109.47170 * 240.00253 * 2 1 3 5 5 O 1.45204 * 109.47606 * 119.99865 * 2 1 3 6 6 C 1.34230 * 116.99495 * 60.00061 * 5 2 1 7 7 O 1.20819 * 120.00204 * 359.97438 * 6 5 2 8 8 C 1.50704 * 119.99699 * 180.02562 * 6 5 2 9 9 H 1.09003 * 109.46966 * 59.99802 * 8 6 5 10 10 C 1.53000 * 109.47105 * 180.02562 * 8 6 5 11 11 C 1.52998 * 109.47366 * 180.02562 * 10 8 6 12 12 C 1.53011 * 109.46630 * 299.99982 * 11 10 8 13 13 H 1.08996 * 109.46527 * 180.02562 * 12 11 10 14 14 N 1.46496 * 109.46794 * 299.99599 * 12 11 10 15 15 C 1.39146 * 120.00300 * 205.00191 * 14 12 11 16 16 N 1.32341 * 119.71176 * 0.02562 * 15 14 12 17 17 C 1.32011 * 121.64175 * 179.70717 * 16 15 14 18 18 C 1.37980 * 120.90219 * 0.53716 * 17 16 15 19 19 C 1.50696 * 120.32813 * 179.74867 * 18 17 16 20 20 O 1.42903 * 109.47131 * 119.71716 * 19 18 17 21 21 Si 1.86305 * 109.47185 * 359.72256 * 19 18 17 22 22 C 1.38903 * 119.34469 * 359.47358 * 18 17 16 23 23 C 1.38436 * 118.49024 * 0.25638 * 22 18 17 24 24 F 1.35096 * 120.47665 * 179.97438 * 23 22 18 25 25 C 1.52992 * 109.47408 * 59.99747 * 12 11 10 26 26 C 1.52999 * 109.47037 * 299.99530 * 8 6 5 27 27 H 1.09010 * 109.46804 * 299.99667 * 1 2 3 28 28 H 1.08994 * 109.47819 * 59.99826 * 1 2 3 29 29 H 1.09007 * 109.47059 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47180 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.46718 * 300.00046 * 3 2 1 32 32 H 1.08995 * 109.47135 * 59.99955 * 3 2 1 33 33 H 1.09007 * 109.46613 * 299.99640 * 4 2 1 34 34 H 1.08994 * 109.47308 * 59.99116 * 4 2 1 35 35 H 1.08999 * 109.47598 * 180.02562 * 4 2 1 36 36 H 1.08996 * 109.47169 * 59.99400 * 10 8 6 37 37 H 1.09003 * 109.47001 * 299.99869 * 10 8 6 38 38 H 1.08995 * 109.47425 * 179.97438 * 11 10 8 39 39 H 1.08999 * 109.47215 * 59.98863 * 11 10 8 40 40 H 0.97007 * 120.00319 * 25.00585 * 14 12 11 41 41 H 1.08004 * 119.55000 * 180.26342 * 17 16 15 42 42 H 1.08999 * 109.47358 * 239.72075 * 19 18 17 43 43 H 0.96700 * 114.00311 * 300.00591 * 20 19 18 44 44 H 1.48497 * 110.00233 * 179.97438 * 21 19 18 45 45 H 1.48492 * 109.99800 * 301.31995 * 21 19 18 46 46 H 1.08010 * 120.75708 * 180.23201 * 22 18 17 47 47 H 1.09003 * 109.47138 * 59.99835 * 25 12 11 48 48 H 1.08995 * 109.47253 * 180.02562 * 25 12 11 49 49 H 1.08994 * 109.47515 * 300.00249 * 26 8 6 50 50 H 1.09009 * 109.46868 * 60.00025 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0141 -0.6845 1.1856 6 6 1.6534 -1.9684 1.3378 7 8 0.9560 -2.5025 0.5083 8 6 2.1175 -2.7434 2.5441 9 1 1.7533 -2.2583 3.4498 10 6 1.5711 -4.1708 2.4744 11 6 2.0418 -4.9575 3.6994 12 6 3.5712 -4.9973 3.7231 13 1 3.9064 -5.5582 4.5955 14 7 4.0615 -5.6491 2.5062 15 6 5.3076 -6.2684 2.5024 16 7 6.0448 -6.2656 3.6014 17 6 7.2296 -6.8464 3.6420 18 6 7.7505 -7.4724 2.5282 19 6 9.1068 -8.1264 2.5874 20 8 8.9769 -9.5197 2.2977 21 14 9.8261 -7.9112 4.2925 22 6 7.0098 -7.4989 1.3534 23 6 5.7683 -6.8865 1.3416 24 9 5.0143 -6.8878 0.2206 25 6 4.1175 -3.5700 3.7928 26 6 3.6468 -2.7839 2.5669 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.6766 -1.7489 -1.2492 34 1 1.6765 -0.2075 -2.1392 35 1 3.1300 -0.7216 -1.2491 36 1 1.9356 -4.6555 1.5688 37 1 0.4816 -4.1424 2.4579 38 1 1.6521 -5.9742 3.6499 39 1 1.6770 -4.4725 4.6048 40 1 3.5176 -5.6490 1.7030 41 1 7.8010 -6.8274 4.5583 42 1 9.7662 -7.6626 1.8538 43 1 8.4028 -9.9973 2.9119 44 1 11.1636 -8.5524 4.3642 45 1 9.9366 -6.4667 4.6185 46 1 7.3939 -7.9858 0.4691 47 1 3.7526 -3.0850 4.6982 48 1 5.2070 -3.5984 3.8092 49 1 4.0110 -3.2689 1.6613 50 1 4.0365 -1.7670 2.6163 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14048280_17656566.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:50:56 Heat of formation + Delta-G solvation = -122.700902 kcal Electronic energy + Delta-G solvation = -32678.872313 eV Core-core repulsion = 28201.184236 eV Total energy + Delta-G solvation = -4477.688077 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 353.184 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -49.97001 -42.15099 -41.45351 -39.99226 -38.17628 -37.74922 -35.71322 -35.02284 -33.22403 -32.25553 -31.82601 -30.30426 -28.47175 -28.38007 -26.50394 -25.71625 -24.68251 -23.72098 -23.01918 -22.45042 -20.68921 -20.38984 -19.49105 -18.41122 -18.33465 -18.12965 -17.63698 -17.53526 -17.11957 -17.04389 -16.42006 -16.06059 -15.95085 -15.87536 -15.50592 -15.40806 -15.34529 -14.90098 -14.74917 -14.49992 -14.33788 -14.14509 -13.92132 -13.64462 -13.54809 -13.44348 -13.28070 -13.21040 -13.02365 -13.00275 -12.93725 -12.57248 -12.50369 -12.30414 -12.26302 -12.11147 -11.95250 -11.67738 -11.46195 -11.39037 -11.09385 -10.86267 -10.69677 -10.64757 -10.39231 -8.73416 -4.95550 -0.07053 0.12033 1.14277 1.33528 1.63957 1.67766 2.01558 2.01848 2.56332 3.04165 3.30004 3.41792 3.51062 3.59141 3.63750 3.66458 3.67941 3.71803 3.86692 3.87368 3.98049 4.02950 4.06769 4.12129 4.34693 4.40260 4.42781 4.45560 4.48277 4.49769 4.51319 4.66888 4.68164 4.73303 4.75257 4.79281 4.80458 4.84681 4.97763 5.00889 5.04150 5.05187 5.11346 5.15984 5.16048 5.20810 5.26728 5.30959 5.43182 5.53153 6.03652 6.18454 6.75661 6.79950 6.95660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.108 3.892 3 C -0.139 4.139 4 C -0.180 4.180 5 O -0.355 6.355 6 C 0.462 3.538 7 O -0.527 6.527 8 C -0.075 4.075 9 H 0.131 0.869 10 C -0.101 4.101 11 C -0.119 4.119 12 C 0.155 3.845 13 H 0.097 0.903 14 N -0.709 5.709 15 C 0.387 3.613 16 N -0.519 5.519 17 C 0.150 3.850 18 C -0.208 4.208 19 C -0.061 4.061 20 O -0.557 6.557 21 Si 0.779 3.221 22 C -0.041 4.041 23 C -0.045 4.045 24 F -0.146 7.146 25 C -0.121 4.121 26 C -0.102 4.102 27 H 0.066 0.934 28 H 0.085 0.915 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.093 0.907 32 H 0.071 0.929 33 H 0.061 0.939 34 H 0.085 0.915 35 H 0.060 0.940 36 H 0.054 0.946 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.105 0.895 40 H 0.409 0.591 41 H 0.185 0.815 42 H 0.108 0.892 43 H 0.396 0.604 44 H -0.299 1.299 45 H -0.277 1.277 46 H 0.149 0.851 47 H 0.097 0.903 48 H 0.063 0.937 49 H 0.048 0.952 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.646 1.308 5.500 5.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.072 3.928 3 C -0.195 4.195 4 C -0.238 4.238 5 O -0.273 6.273 6 C 0.307 3.693 7 O -0.416 6.416 8 C -0.094 4.094 9 H 0.149 0.851 10 C -0.139 4.139 11 C -0.156 4.156 12 C 0.051 3.949 13 H 0.115 0.885 14 N -0.342 5.342 15 C 0.148 3.852 16 N -0.236 5.236 17 C -0.008 4.008 18 C -0.214 4.214 19 C -0.171 4.171 20 O -0.365 6.365 21 Si 0.684 3.316 22 C -0.068 4.068 23 C -0.072 4.072 24 F -0.125 7.125 25 C -0.160 4.160 26 C -0.140 4.140 27 H 0.085 0.915 28 H 0.103 0.897 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.112 0.888 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.104 0.896 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.092 0.908 38 H 0.098 0.902 39 H 0.123 0.877 40 H 0.247 0.753 41 H 0.202 0.798 42 H 0.126 0.874 43 H 0.246 0.754 44 H -0.227 1.227 45 H -0.204 1.204 46 H 0.167 0.833 47 H 0.115 0.885 48 H 0.081 0.919 49 H 0.067 0.933 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.273 2.184 6.082 6.468 hybrid contribution -0.131 -0.214 -2.655 2.666 sum -0.403 1.970 3.428 3.974 Atomic orbital electron populations 1.22453 0.93890 1.03589 1.03746 1.22408 0.94592 0.93249 0.82550 1.21875 1.02296 0.91241 1.04135 1.22457 1.01581 1.02073 0.97648 1.86557 1.69721 1.25449 1.45548 1.24209 0.76611 0.80641 0.87865 1.90586 1.36371 1.70391 1.44243 1.21244 0.98093 0.95492 0.94593 0.85111 1.21393 1.01327 0.92253 0.98956 1.21841 0.93324 1.01483 0.98982 1.21074 0.93708 0.92943 0.87163 0.88467 1.44907 1.15100 1.58297 1.15907 1.18562 0.88208 0.90177 0.88255 1.67374 1.07919 1.23358 1.24946 1.22723 0.90049 0.90171 0.97819 1.20971 0.99899 1.06318 0.94204 1.25028 0.95241 0.83601 1.13254 1.86475 1.72431 1.18539 1.59063 0.93772 0.80477 0.79739 0.77632 1.21392 0.90977 0.94522 0.99862 1.18222 0.94117 1.10914 0.83934 1.91457 1.75523 1.95609 1.49880 1.21915 1.01085 0.94821 0.98165 1.21412 0.91608 1.01569 0.99376 0.91545 0.89658 0.91862 0.91409 0.88790 0.91028 0.91971 0.89599 0.92087 0.92686 0.90767 0.90237 0.87658 0.75283 0.79839 0.87423 0.75416 1.22671 1.20377 0.83306 0.88461 0.91865 0.93297 0.90574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.47 8.37 71.98 0.60 0.13 16 2 C 0.11 0.30 1.13 -10.79 -0.01 0.29 16 3 C -0.14 0.21 8.85 71.98 0.64 0.85 16 4 C -0.18 -0.65 8.37 71.98 0.60 -0.05 16 5 O -0.36 -1.64 9.79 -51.41 -0.50 -2.14 16 6 C 0.46 2.14 6.57 71.24 0.47 2.60 16 7 O -0.53 -5.02 11.48 21.99 0.25 -4.77 16 8 C -0.08 0.13 2.63 -11.54 -0.03 0.10 16 9 H 0.13 -0.75 8.14 -2.39 -0.02 -0.77 16 10 C -0.10 0.23 4.32 30.59 0.13 0.36 16 11 C -0.12 0.72 5.61 30.60 0.17 0.89 16 12 C 0.16 -0.56 2.80 44.99 0.13 -0.43 16 13 H 0.10 -0.29 7.54 -2.39 -0.02 -0.30 16 14 N -0.71 -0.15 4.38 -324.28 -1.42 -1.57 16 15 C 0.39 1.20 7.47 133.08 0.99 2.20 16 16 N -0.52 -0.90 9.20 -193.03 -1.78 -2.68 16 17 C 0.15 -0.22 9.84 84.60 0.83 0.61 16 18 C -0.21 0.17 5.40 -19.77 -0.11 0.06 16 19 C -0.06 0.14 2.84 71.23 0.20 0.35 16 20 O -0.56 0.71 12.78 -148.98 -1.90 -1.20 16 21 Si 0.78 -3.67 29.82 68.60 2.05 -1.63 16 22 C -0.04 -0.10 9.75 22.48 0.22 0.12 16 23 C -0.05 -0.22 7.35 22.58 0.17 -0.05 16 24 F -0.15 -1.07 16.65 44.97 0.75 -0.32 16 25 C -0.12 0.47 5.62 30.61 0.17 0.64 16 26 C -0.10 0.17 4.98 30.61 0.15 0.32 16 27 H 0.07 0.10 8.14 -2.38 -0.02 0.09 16 28 H 0.08 -0.02 8.14 -2.39 -0.02 -0.04 16 29 H 0.06 0.45 5.89 -2.38 -0.01 0.44 16 30 H 0.07 -0.09 8.14 -2.39 -0.02 -0.11 16 31 H 0.09 -0.41 8.14 -2.39 -0.02 -0.43 16 32 H 0.07 -0.15 8.14 -2.39 -0.02 -0.16 16 33 H 0.06 0.51 5.89 -2.38 -0.01 0.50 16 34 H 0.09 0.05 8.14 -2.39 -0.02 0.03 16 35 H 0.06 0.21 8.14 -2.39 -0.02 0.19 16 36 H 0.05 0.05 6.47 -2.39 -0.02 0.03 16 37 H 0.07 -0.07 8.10 -2.39 -0.02 -0.09 16 38 H 0.08 -0.45 8.14 -2.39 -0.02 -0.47 16 39 H 0.11 -1.00 8.14 -2.39 -0.02 -1.02 16 40 H 0.41 0.34 6.34 -92.70 -0.59 -0.25 16 41 H 0.19 -1.27 4.88 -2.91 -0.01 -1.28 16 42 H 0.11 -0.12 7.96 -2.39 -0.02 -0.14 16 43 H 0.40 -3.67 8.70 -74.06 -0.64 -4.32 16 44 H -0.30 -0.98 7.11 99.48 0.71 -0.27 16 45 H -0.28 0.20 7.11 99.48 0.71 0.91 16 46 H 0.15 0.22 8.06 -2.91 -0.02 0.19 16 47 H 0.10 -0.72 8.14 -2.39 -0.02 -0.74 16 48 H 0.06 -0.04 8.14 -2.39 -0.02 -0.05 16 49 H 0.05 0.10 7.60 -2.39 -0.02 0.08 16 50 H 0.08 -0.09 8.11 -2.38 -0.02 -0.11 16 Total: 0.00 -15.97 393.43 2.55 -13.43 By element: Atomic # 1 Polarization: -7.90 SS G_CDS: -0.23 Total: -8.13 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: 5.33 Total: 9.00 kcal Atomic # 7 Polarization: -1.05 SS G_CDS: -3.20 Total: -4.25 kcal Atomic # 8 Polarization: -5.95 SS G_CDS: -2.15 Total: -8.11 kcal Atomic # 9 Polarization: -1.07 SS G_CDS: 0.75 Total: -0.32 kcal Atomic # 14 Polarization: -3.67 SS G_CDS: 2.05 Total: -1.63 kcal Total: -15.97 2.55 -13.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14048280_17656566.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.274 kcal (2) G-P(sol) polarization free energy of solvation -15.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds