Wall clock time and date at job start Mon Mar 8 2021 05:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34773 * 119.99838 * 2 1 4 4 O 1.21516 * 120.00175 * 179.97438 * 3 2 1 5 5 O 1.34639 * 120.00293 * 0.02562 * 3 2 1 6 6 C 1.45195 * 117.00460 * 179.97438 * 5 3 2 7 7 C 1.52999 * 109.47295 * 59.99545 * 6 5 3 8 8 C 1.53006 * 109.47338 * 179.97438 * 6 5 3 9 9 C 1.53008 * 109.47025 * 299.99679 * 6 5 3 10 10 C 1.46500 * 120.00155 * 180.02562 * 2 1 3 11 11 H 1.09001 * 109.47297 * 179.97438 * 10 2 1 12 12 C 1.52997 * 109.47007 * 299.99972 * 10 2 1 13 13 C 1.53002 * 109.46817 * 180.02562 * 12 10 2 14 14 C 1.52996 * 109.46972 * 299.99733 * 13 12 10 15 15 H 1.09001 * 109.46993 * 180.02562 * 14 13 12 16 16 N 1.46500 * 109.47249 * 299.99946 * 14 13 12 17 17 C 1.38411 * 120.00271 * 204.99912 * 16 14 13 18 18 N 1.32497 * 119.21437 * 359.73449 * 17 16 14 19 19 C 1.32279 * 120.73862 * 179.71190 * 18 17 16 20 20 C 1.38601 * 119.19561 * 0.55050 * 19 18 17 21 21 C 1.50698 * 120.71988 * 179.74675 * 20 19 18 22 22 O 1.42905 * 109.47217 * 244.97789 * 21 20 19 23 23 Si 1.86298 * 109.47129 * 4.97786 * 21 20 19 24 24 C 1.38607 * 118.56250 * 359.72776 * 20 19 18 25 25 N 1.32276 * 119.19391 * 359.97438 * 24 20 19 26 26 C 1.52997 * 109.47131 * 60.00459 * 14 13 12 27 27 C 1.52999 * 109.46991 * 299.99311 * 26 14 13 28 28 H 1.08999 * 109.46748 * 269.99069 * 1 2 3 29 29 H 1.08997 * 109.47257 * 29.99586 * 1 2 3 30 30 H 1.09002 * 109.46769 * 149.99443 * 1 2 3 31 31 H 1.08998 * 109.46862 * 59.99976 * 7 6 5 32 32 H 1.09003 * 109.47102 * 180.02562 * 7 6 5 33 33 H 1.09003 * 109.47129 * 300.00403 * 7 6 5 34 34 H 1.09004 * 109.46785 * 59.99647 * 8 6 5 35 35 H 1.08995 * 109.46833 * 180.02562 * 8 6 5 36 36 H 1.08998 * 109.46848 * 300.00041 * 8 6 5 37 37 H 1.09003 * 109.46947 * 59.99873 * 9 6 5 38 38 H 1.08990 * 109.46977 * 180.02562 * 9 6 5 39 39 H 1.09005 * 109.46872 * 300.00011 * 9 6 5 40 40 H 1.09002 * 109.47153 * 299.99911 * 12 10 2 41 41 H 1.08996 * 109.46952 * 60.00083 * 12 10 2 42 42 H 1.08996 * 109.47407 * 60.00219 * 13 12 10 43 43 H 1.09000 * 109.46986 * 179.97438 * 13 12 10 44 44 H 0.96995 * 119.99971 * 25.00443 * 16 14 13 45 45 H 1.07999 * 120.40088 * 180.25211 * 19 18 17 46 46 H 1.09005 * 109.47353 * 124.98003 * 21 20 19 47 47 H 0.96695 * 113.99769 * 60.00203 * 22 21 20 48 48 H 1.48499 * 110.00021 * 179.97438 * 23 21 20 49 49 H 1.48497 * 109.99963 * 301.31885 * 23 21 20 50 50 H 1.07996 * 120.40531 * 179.97438 * 24 20 19 51 51 H 1.09002 * 109.47153 * 179.97438 * 26 14 13 52 52 H 1.08993 * 109.47194 * 60.00154 * 26 14 13 53 53 H 1.08993 * 109.47839 * 300.00447 * 27 26 14 54 54 H 1.09000 * 109.47160 * 180.02562 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3540 1.1673 0.0005 5 8 1.4657 2.3332 0.0005 6 6 2.2564 3.5510 0.0011 7 6 3.1392 3.5865 -1.2481 8 6 1.3244 4.7644 0.0010 9 6 3.1391 3.5854 1.2504 10 6 2.1976 -1.2687 -0.0006 11 1 3.2692 -1.0695 -0.0009 12 6 1.8280 -2.0715 1.2483 13 6 2.5935 -3.3963 1.2480 14 6 2.2244 -4.1982 -0.0016 15 1 2.7695 -5.1422 -0.0016 16 7 0.7842 -4.4665 -0.0019 17 6 0.2838 -5.5583 -0.6899 18 7 1.1207 -6.3475 -1.3474 19 6 0.6758 -7.4022 -2.0102 20 6 -0.6841 -7.6700 -2.0206 21 6 -1.2289 -8.8590 -2.7693 22 8 -2.0570 -8.4073 -3.8428 23 14 0.1837 -9.8620 -3.4543 24 6 -1.5320 -6.8208 -1.3271 25 7 -1.0213 -5.7866 -0.6795 26 6 2.5941 -3.3954 -1.2504 27 6 1.8285 -2.0707 -1.2502 28 1 -0.3633 -0.0002 1.0277 29 1 -0.3633 0.8900 -0.5137 30 1 -0.3633 -0.8900 -0.5139 31 1 2.5104 3.5619 -2.1381 32 1 3.7331 4.5005 -1.2474 33 1 3.8032 2.7220 -1.2484 34 1 0.6952 4.7392 0.8907 35 1 1.9180 5.6784 0.0009 36 1 0.6959 4.7396 -0.8893 37 1 3.8031 2.7209 1.2501 38 1 3.7323 4.4997 1.2511 39 1 2.5101 3.5601 2.1404 40 1 2.0913 -1.5003 2.1385 41 1 0.7564 -2.2707 1.2482 42 1 3.6651 -3.1967 1.2483 43 1 2.3306 -3.9680 2.1379 44 1 0.1813 -3.8790 0.4799 45 1 1.3633 -8.0442 -2.5409 46 1 -1.8179 -9.4766 -2.0912 47 1 -1.5977 -7.8508 -4.4865 48 1 -0.3403 -11.0379 -4.1944 49 1 1.0128 -9.0221 -4.3556 50 1 -2.5968 -7.0012 -1.3156 51 1 2.3315 -3.9670 -2.1407 52 1 3.6656 -3.1959 -1.2502 53 1 0.7570 -2.2702 -1.2505 54 1 2.0914 -1.4990 -2.1402 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14055834_12175864.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:18:29 Heat of formation + Delta-G solvation = -41.869710 kcal Electronic energy + Delta-G solvation = -34412.695299 eV Core-core repulsion = 29966.039242 eV Total energy + Delta-G solvation = -4446.656057 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 365.215 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.19506 -41.95549 -40.46424 -38.52121 -37.97261 -36.77305 -35.34022 -34.72568 -34.46627 -32.24135 -31.89167 -29.97784 -28.40577 -28.35429 -27.93098 -26.53906 -25.83632 -24.43611 -23.77517 -23.26955 -22.15449 -20.55236 -20.34012 -19.53710 -18.98612 -18.36083 -18.03376 -17.92902 -17.36509 -16.90709 -16.60600 -16.38416 -16.13963 -16.00284 -15.69596 -15.56162 -15.45495 -15.14304 -14.88778 -14.63984 -14.53719 -14.50982 -14.02544 -13.97561 -13.60474 -13.48330 -13.32716 -13.27575 -13.17370 -13.15469 -13.01156 -12.90127 -12.81345 -12.53679 -12.37601 -12.26031 -12.24374 -12.04292 -11.87004 -11.72103 -11.60264 -11.44270 -11.40671 -11.15744 -11.05231 -10.67482 -10.00675 -9.81737 -9.06834 -4.89933 0.09441 0.17996 1.06330 1.33354 1.60814 1.68311 1.86733 1.99045 2.78345 2.83026 3.20045 3.45149 3.56887 3.63805 3.69513 3.70992 3.75559 3.76145 3.82463 3.83004 3.90935 3.97953 4.11144 4.14045 4.25634 4.33772 4.38851 4.43791 4.46111 4.56329 4.57566 4.57951 4.62188 4.67070 4.72412 4.75531 4.79536 4.83695 4.83971 4.86090 4.94332 5.01864 5.07219 5.08870 5.10001 5.17542 5.23183 5.27510 5.28485 5.34475 5.45507 5.46799 5.82069 6.08274 6.22134 6.44092 6.50164 7.21411 7.31519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.593 5.593 3 C 0.644 3.356 4 O -0.594 6.594 5 O -0.366 6.366 6 C 0.126 3.874 7 C -0.179 4.179 8 C -0.136 4.136 9 C -0.178 4.178 10 C 0.157 3.843 11 H 0.089 0.911 12 C -0.121 4.121 13 C -0.117 4.117 14 C 0.165 3.835 15 H 0.093 0.907 16 N -0.682 5.682 17 C 0.555 3.445 18 N -0.574 5.574 19 C 0.192 3.808 20 C -0.286 4.286 21 C -0.055 4.055 22 O -0.547 6.547 23 Si 0.758 3.242 24 C 0.214 3.786 25 N -0.589 5.589 26 C -0.120 4.120 27 C -0.117 4.117 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.059 0.941 32 H 0.087 0.913 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.098 0.902 36 H 0.068 0.932 37 H 0.063 0.937 38 H 0.087 0.913 39 H 0.061 0.939 40 H 0.069 0.931 41 H 0.075 0.925 42 H 0.092 0.908 43 H 0.085 0.915 44 H 0.415 0.585 45 H 0.184 0.816 46 H 0.131 0.869 47 H 0.385 0.615 48 H -0.301 1.301 49 H -0.280 1.280 50 H 0.181 0.819 51 H 0.060 0.940 52 H 0.083 0.917 53 H 0.069 0.931 54 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.567 -0.823 1.986 2.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.332 5.332 3 C 0.399 3.601 4 O -0.485 6.485 5 O -0.280 6.280 6 C 0.090 3.910 7 C -0.236 4.236 8 C -0.193 4.193 9 C -0.235 4.235 10 C 0.056 3.944 11 H 0.107 0.893 12 C -0.160 4.160 13 C -0.156 4.156 14 C 0.060 3.940 15 H 0.111 0.889 16 N -0.320 5.320 17 C 0.199 3.801 18 N -0.297 5.297 19 C 0.024 3.976 20 C -0.294 4.294 21 C -0.166 4.166 22 O -0.355 6.355 23 Si 0.664 3.336 24 C 0.046 3.954 25 N -0.311 5.311 26 C -0.159 4.159 27 C -0.155 4.155 28 H 0.087 0.913 29 H 0.093 0.907 30 H 0.105 0.895 31 H 0.078 0.922 32 H 0.106 0.894 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.117 0.883 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.105 0.895 39 H 0.080 0.920 40 H 0.087 0.913 41 H 0.094 0.906 42 H 0.111 0.889 43 H 0.104 0.896 44 H 0.254 0.746 45 H 0.200 0.800 46 H 0.149 0.851 47 H 0.234 0.766 48 H -0.229 1.229 49 H -0.206 1.206 50 H 0.198 0.802 51 H 0.079 0.921 52 H 0.101 0.899 53 H 0.088 0.912 54 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.317 -0.492 2.131 2.210 hybrid contribution -1.016 0.439 -1.263 1.679 sum -0.698 -0.053 0.868 1.115 Atomic orbital electron populations 1.21894 0.77387 1.04059 1.03080 1.46920 1.08085 1.02806 1.75418 1.18294 0.83903 0.81905 0.76019 1.90884 1.13408 1.87155 1.57030 1.86314 1.41325 1.14035 1.86372 1.22362 0.91472 0.80798 0.96419 1.22463 1.00390 1.04244 0.96520 1.21879 0.99449 0.94415 1.03604 1.22455 1.00377 1.04242 0.96462 1.21178 0.97102 0.80333 0.95812 0.89255 1.21828 1.01314 0.95969 0.96876 1.21785 1.01917 0.94548 0.97306 1.20964 0.79182 0.99070 0.94735 0.88858 1.44392 1.08546 1.25623 1.53420 1.19646 0.85121 0.87720 0.87646 1.67980 1.39130 1.07925 1.14639 1.23185 0.93549 0.90653 0.90165 1.21645 0.95864 1.03626 1.08252 1.24830 1.04030 0.96891 0.90851 1.86590 1.39712 1.71276 1.37942 0.94262 0.77206 0.76753 0.85426 1.23122 1.01192 0.85654 0.85439 1.68002 1.13065 1.23657 1.26424 1.21842 1.00927 0.94659 0.98492 1.21759 1.01195 0.95882 0.96698 0.91296 0.90719 0.89507 0.92178 0.89427 0.91870 0.91158 0.88310 0.91303 0.91808 0.89468 0.91996 0.91253 0.90637 0.88917 0.89613 0.74612 0.80005 0.85120 0.76624 1.22917 1.20638 0.80208 0.92079 0.89877 0.91249 0.92827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 -0.17 9.50 127.77 1.21 1.04 16 2 N -0.59 -1.55 2.76 -952.94 -2.63 -4.18 16 3 C 0.64 5.27 7.70 129.79 1.00 6.27 16 4 O -0.59 -7.67 11.21 19.79 0.22 -7.45 16 5 O -0.37 -2.40 8.71 -55.48 -0.48 -2.89 16 6 C 0.13 0.46 1.13 -10.79 -0.01 0.45 16 7 C -0.18 -0.73 8.37 71.98 0.60 -0.13 16 8 C -0.14 0.21 8.85 71.98 0.64 0.85 16 9 C -0.18 -0.66 8.37 71.98 0.60 -0.06 16 10 C 0.16 0.02 2.52 44.99 0.11 0.13 16 11 H 0.09 0.38 6.90 -2.39 -0.02 0.37 16 12 C -0.12 0.48 5.03 30.59 0.15 0.63 16 13 C -0.12 0.65 5.61 30.59 0.17 0.82 16 14 C 0.17 -0.52 2.77 44.99 0.12 -0.39 16 15 H 0.09 -0.14 7.51 -2.39 -0.02 -0.16 16 16 N -0.68 0.82 4.38 -330.44 -1.45 -0.62 16 17 C 0.56 1.73 8.40 261.48 2.20 3.93 16 18 N -0.57 -1.56 9.21 -197.98 -1.82 -3.38 16 19 C 0.19 -0.15 9.92 84.71 0.84 0.69 16 20 C -0.29 0.46 5.36 -19.69 -0.11 0.36 16 21 C -0.06 0.20 2.83 71.24 0.20 0.40 16 22 O -0.55 0.15 12.85 -148.98 -1.91 -1.77 16 23 Si 0.76 -3.33 29.95 68.60 2.05 -1.28 16 24 C 0.21 0.15 10.99 84.71 0.93 1.08 16 25 N -0.59 -2.30 10.46 -197.98 -2.07 -4.37 16 26 C -0.12 0.21 5.62 30.59 0.17 0.38 16 27 C -0.12 0.09 5.03 30.60 0.15 0.25 16 28 H 0.07 -0.28 8.14 -2.39 -0.02 -0.30 16 29 H 0.07 -0.09 7.37 -2.39 -0.02 -0.11 16 30 H 0.09 -0.42 6.43 -2.39 -0.02 -0.44 16 31 H 0.06 0.22 8.14 -2.39 -0.02 0.20 16 32 H 0.09 0.04 8.14 -2.39 -0.02 0.02 16 33 H 0.06 0.60 5.88 -2.39 -0.01 0.59 16 34 H 0.07 -0.13 8.14 -2.38 -0.02 -0.15 16 35 H 0.10 -0.48 8.14 -2.39 -0.02 -0.50 16 36 H 0.07 -0.11 8.14 -2.39 -0.02 -0.13 16 37 H 0.06 0.58 5.88 -2.39 -0.01 0.56 16 38 H 0.09 0.02 8.14 -2.39 -0.02 0.00 16 39 H 0.06 0.19 8.14 -2.38 -0.02 0.17 16 40 H 0.07 -0.15 8.14 -2.39 -0.02 -0.17 16 41 H 0.08 -0.43 6.04 -2.39 -0.01 -0.44 16 42 H 0.09 -0.56 8.14 -2.39 -0.02 -0.58 16 43 H 0.09 -0.54 8.14 -2.39 -0.02 -0.56 16 44 H 0.41 -1.17 6.98 -92.71 -0.65 -1.82 16 45 H 0.18 -0.99 5.01 -2.91 -0.01 -1.00 16 46 H 0.13 -0.77 7.96 -2.38 -0.02 -0.79 16 47 H 0.38 -1.98 8.70 -74.06 -0.64 -2.62 16 48 H -0.30 -1.14 7.11 99.48 0.71 -0.43 16 49 H -0.28 0.21 7.02 99.48 0.70 0.91 16 50 H 0.18 -0.49 8.06 -2.91 -0.02 -0.51 16 51 H 0.06 0.09 8.14 -2.39 -0.02 0.07 16 52 H 0.08 -0.21 8.14 -2.39 -0.02 -0.23 16 53 H 0.07 -0.07 6.13 -2.39 -0.01 -0.08 16 54 H 0.05 0.13 8.14 -2.39 -0.02 0.11 16 Total: 0.00 -17.85 414.50 0.57 -17.28 By element: Atomic # 1 Polarization: -7.70 SS G_CDS: -0.34 Total: -8.04 kcal Atomic # 6 Polarization: 7.70 SS G_CDS: 9.00 Total: 16.69 kcal Atomic # 7 Polarization: -4.59 SS G_CDS: -7.97 Total: -12.56 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: -2.18 Total: -12.11 kcal Atomic # 14 Polarization: -3.33 SS G_CDS: 2.05 Total: -1.28 kcal Total: -17.85 0.57 -17.28 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14055834_12175864.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.585 kcal (2) G-P(sol) polarization free energy of solvation -17.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds