Wall clock time and date at job start Mon Mar 8 2021 05:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34779 * 120.00231 * 2 1 4 4 O 1.21512 * 120.00286 * 180.02562 * 3 2 1 5 5 O 1.34636 * 119.99859 * 359.97438 * 3 2 1 6 6 C 1.45202 * 116.99916 * 180.02562 * 5 3 2 7 7 C 1.52994 * 109.47204 * 60.00134 * 6 5 3 8 8 C 1.53000 * 109.46699 * 180.02562 * 6 5 3 9 9 C 1.53000 * 109.46785 * 299.99639 * 6 5 3 10 10 C 1.46503 * 120.00024 * 179.97438 * 2 1 3 11 11 H 1.09002 * 109.47074 * 179.97438 * 10 2 1 12 12 C 1.52993 * 109.47062 * 300.00511 * 10 2 1 13 13 C 1.53002 * 109.47066 * 179.97438 * 12 10 2 14 14 C 1.53005 * 109.47197 * 300.00152 * 13 12 10 15 15 H 1.09000 * 109.47360 * 179.97438 * 14 13 12 16 16 N 1.46506 * 109.46831 * 300.00003 * 14 13 12 17 17 C 1.39002 * 119.99722 * 274.99927 * 16 14 13 18 18 N 1.32396 * 119.70460 * 180.02562 * 17 16 14 19 19 C 1.31971 * 121.62228 * 179.97438 * 18 17 16 20 20 C 1.38028 * 120.85657 * 0.02562 * 19 18 17 21 21 C 1.50703 * 120.33288 * 179.97438 * 20 19 18 22 22 O 1.42900 * 109.47078 * 245.00047 * 21 20 19 23 23 Si 1.86298 * 109.47272 * 5.00321 * 21 20 19 24 24 C 1.38883 * 119.32957 * 359.97438 * 20 19 18 25 25 C 1.38299 * 118.50608 * 359.73000 * 24 20 19 26 26 C 1.53002 * 109.46982 * 59.99633 * 14 13 12 27 27 C 1.53000 * 109.46575 * 60.00192 * 10 2 1 28 28 H 1.09006 * 109.47359 * 270.00818 * 1 2 3 29 29 H 1.09005 * 109.46882 * 30.00525 * 1 2 3 30 30 H 1.08994 * 109.47504 * 150.00372 * 1 2 3 31 31 H 1.08993 * 109.47534 * 60.00450 * 7 6 5 32 32 H 1.09000 * 109.46655 * 180.02562 * 7 6 5 33 33 H 1.09001 * 109.46658 * 299.99504 * 7 6 5 34 34 H 1.08994 * 109.47826 * 60.00066 * 8 6 5 35 35 H 1.09004 * 109.46798 * 179.97438 * 8 6 5 36 36 H 1.08993 * 109.47360 * 299.99134 * 8 6 5 37 37 H 1.08997 * 109.47183 * 60.00567 * 9 6 5 38 38 H 1.09004 * 109.46930 * 180.02562 * 9 6 5 39 39 H 1.09006 * 109.47410 * 300.00163 * 9 6 5 40 40 H 1.08996 * 109.47340 * 299.99294 * 12 10 2 41 41 H 1.09001 * 109.47730 * 60.00284 * 12 10 2 42 42 H 1.09001 * 109.47600 * 180.02562 * 13 12 10 43 43 H 1.09002 * 109.47097 * 59.99954 * 13 12 10 44 44 H 0.96995 * 119.99814 * 94.99660 * 16 14 13 45 45 H 1.07997 * 119.57137 * 179.97438 * 19 18 17 46 46 H 1.08999 * 109.46792 * 125.00399 * 21 20 19 47 47 H 0.96703 * 113.99414 * 180.02562 * 22 21 20 48 48 H 1.48497 * 110.00009 * 300.00034 * 23 21 20 49 49 H 1.48502 * 109.99861 * 61.31559 * 23 21 20 50 50 H 1.07999 * 120.74621 * 179.97438 * 24 20 19 51 51 H 1.07997 * 120.45616 * 180.28297 * 25 24 20 52 52 H 1.08992 * 109.47060 * 60.00351 * 26 14 13 53 53 H 1.09004 * 109.46930 * 180.02562 * 26 14 13 54 54 H 1.09001 * 109.47194 * 60.00272 * 27 10 2 55 55 H 1.08992 * 109.47399 * 300.00099 * 27 10 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3540 1.1672 -0.0005 5 8 1.4658 2.3332 -0.0005 6 6 2.2566 3.5509 -0.0011 7 6 3.1392 3.5853 -1.2503 8 6 1.3246 4.7643 -0.0010 9 6 3.1392 3.5863 1.2482 10 6 2.1975 -1.2688 0.0006 11 1 3.2692 -1.0696 0.0000 12 6 1.8278 -2.0705 1.2500 13 6 2.5923 -3.3958 1.2503 14 6 2.2223 -4.1984 0.0013 15 1 2.7672 -5.1423 0.0013 16 7 0.7818 -4.4655 0.0016 17 6 0.2784 -5.5616 0.6925 18 7 -1.0243 -5.7979 0.6885 19 6 -1.5428 -6.8275 1.3310 20 6 -0.7384 -7.7004 2.0355 21 6 -1.3431 -8.8720 2.7655 22 8 -1.1442 -8.7114 4.1714 23 14 -3.1684 -8.9552 2.4020 24 6 0.6338 -7.4880 2.0648 25 6 1.1488 -6.4043 1.3770 26 6 2.5919 -3.3965 -1.2482 27 6 1.8278 -2.0715 -1.2484 28 1 -0.3634 0.0001 1.0277 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3634 -0.8899 -0.5137 31 1 2.5105 3.5601 -2.1402 32 1 3.7332 4.4992 -1.2504 33 1 3.8032 2.7209 -1.2498 34 1 0.6961 4.7397 0.8892 35 1 1.9183 5.6784 -0.0009 36 1 0.6955 4.7393 -0.8907 37 1 3.8032 2.7219 1.2486 38 1 3.7326 4.5007 1.2481 39 1 2.5103 3.5619 2.1383 40 1 2.0911 -1.4987 2.1398 41 1 0.7562 -2.2698 1.2501 42 1 2.3286 -3.9673 2.1403 43 1 3.6641 -3.1970 1.2501 44 1 0.1794 -3.8775 -0.4802 45 1 -2.6103 -6.9887 1.3059 46 1 -0.8642 -9.7932 2.4336 47 1 -1.5086 -9.4310 4.7048 48 1 -3.8329 -7.7049 2.8497 49 1 -3.3880 -9.1540 0.9468 50 1 1.2844 -8.1563 2.6092 51 1 2.2115 -6.2121 1.3749 52 1 3.6636 -3.1977 -1.2484 53 1 2.3279 -3.9681 -2.1380 54 1 2.0912 -1.5003 -2.1386 55 1 0.7563 -2.2706 -1.2484 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14055834_13915762.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:18:33 Heat of formation + Delta-G solvation = -59.198862 kcal Electronic energy + Delta-G solvation = -34253.502377 eV Core-core repulsion = 29871.520782 eV Total energy + Delta-G solvation = -4381.981595 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 364.220 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -42.11150 -41.59105 -40.38118 -38.49286 -37.70859 -36.78487 -35.34011 -34.50825 -33.51457 -32.03024 -31.53155 -29.90253 -28.42423 -28.37638 -27.97658 -26.28396 -25.09210 -24.38329 -23.73729 -22.80550 -22.05517 -20.51992 -20.29435 -18.99623 -18.89307 -18.33673 -17.96780 -17.94299 -17.39608 -16.96146 -16.52086 -16.28155 -16.11452 -15.87432 -15.58801 -15.38522 -15.16611 -14.94538 -14.88465 -14.68246 -14.54983 -14.18297 -14.13102 -13.90731 -13.76558 -13.63592 -13.48341 -13.32834 -13.26445 -13.17525 -13.09936 -12.92286 -12.84859 -12.55868 -12.40289 -12.36385 -12.28154 -12.07186 -12.04124 -11.62952 -11.47013 -11.44587 -11.14167 -11.06504 -10.82542 -10.67074 -10.17496 -9.85480 -8.75315 -4.95172 0.09718 0.33469 1.03713 1.33618 1.64954 1.65202 1.98349 2.04473 2.71470 2.75058 3.39213 3.52605 3.53755 3.58999 3.68884 3.72745 3.74170 3.81900 3.88926 3.92455 3.95979 4.05222 4.08955 4.09435 4.25444 4.29735 4.34277 4.37570 4.43719 4.47237 4.51056 4.55804 4.56858 4.59431 4.67424 4.70542 4.74335 4.79339 4.80260 4.81957 4.83402 4.94773 4.98523 5.05086 5.05928 5.06913 5.16070 5.21029 5.21718 5.25345 5.26042 5.41945 5.43128 5.46238 5.98544 6.18775 6.46339 6.95638 7.04642 7.18235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.593 5.593 3 C 0.644 3.356 4 O -0.592 6.592 5 O -0.367 6.367 6 C 0.126 3.874 7 C -0.178 4.178 8 C -0.137 4.137 9 C -0.179 4.179 10 C 0.157 3.843 11 H 0.092 0.908 12 C -0.117 4.117 13 C -0.129 4.129 14 C 0.155 3.845 15 H 0.101 0.899 16 N -0.709 5.709 17 C 0.398 3.602 18 N -0.569 5.569 19 C 0.126 3.874 20 C -0.205 4.205 21 C -0.058 4.058 22 O -0.566 6.566 23 Si 0.766 3.234 24 C -0.010 4.010 25 C -0.235 4.235 26 C -0.116 4.116 27 C -0.124 4.124 28 H 0.058 0.942 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.061 0.939 32 H 0.087 0.913 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.099 0.901 36 H 0.069 0.931 37 H 0.063 0.937 38 H 0.088 0.912 39 H 0.059 0.941 40 H 0.053 0.947 41 H 0.065 0.935 42 H 0.068 0.932 43 H 0.090 0.910 44 H 0.403 0.597 45 H 0.138 0.862 46 H 0.096 0.904 47 H 0.402 0.598 48 H -0.299 1.299 49 H -0.291 1.291 50 H 0.156 0.844 51 H 0.159 0.841 52 H 0.096 0.904 53 H 0.084 0.916 54 H 0.068 0.932 55 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.051 -3.701 0.467 3.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.333 5.333 3 C 0.399 3.601 4 O -0.484 6.484 5 O -0.281 6.281 6 C 0.089 3.911 7 C -0.235 4.235 8 C -0.194 4.194 9 C -0.236 4.236 10 C 0.056 3.944 11 H 0.110 0.890 12 C -0.156 4.156 13 C -0.168 4.168 14 C 0.050 3.950 15 H 0.119 0.881 16 N -0.342 5.342 17 C 0.162 3.838 18 N -0.287 5.287 19 C -0.030 4.030 20 C -0.210 4.210 21 C -0.170 4.170 22 O -0.375 6.375 23 Si 0.673 3.327 24 C -0.035 4.035 25 C -0.260 4.260 26 C -0.154 4.154 27 C -0.162 4.162 28 H 0.076 0.924 29 H 0.096 0.904 30 H 0.108 0.892 31 H 0.080 0.920 32 H 0.106 0.894 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.118 0.882 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.106 0.894 39 H 0.078 0.922 40 H 0.072 0.928 41 H 0.084 0.916 42 H 0.087 0.913 43 H 0.108 0.892 44 H 0.240 0.760 45 H 0.155 0.845 46 H 0.113 0.887 47 H 0.254 0.746 48 H -0.228 1.228 49 H -0.218 1.218 50 H 0.174 0.826 51 H 0.176 0.824 52 H 0.114 0.886 53 H 0.103 0.897 54 H 0.087 0.913 55 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.292 -2.112 -0.617 2.220 hybrid contribution 0.481 0.205 0.147 0.544 sum 0.189 -1.907 -0.470 1.973 Atomic orbital electron populations 1.21862 0.77577 1.04283 1.02587 1.46921 1.07978 1.02923 1.75438 1.18282 0.83908 0.81877 0.75999 1.90879 1.13313 1.87146 1.57015 1.86318 1.41388 1.14077 1.86359 1.22369 0.91475 0.80747 0.96478 1.22453 1.00363 1.04297 0.96414 1.21880 0.99464 0.94457 1.03574 1.22461 1.00382 1.04279 0.96473 1.21194 0.97147 0.80292 0.95788 0.89007 1.21730 1.01162 0.96021 0.96655 1.21992 1.01309 0.95001 0.98485 1.21151 0.79385 0.99293 0.95179 0.88138 1.44742 1.07942 1.26819 1.54687 1.18640 0.88164 0.87811 0.89221 1.67057 1.13641 1.22417 1.25550 1.22096 0.98744 0.89402 0.92793 1.20334 0.95463 1.00465 1.04723 1.24492 1.11300 0.97047 0.84116 1.86445 1.83375 1.52028 1.15681 0.94503 0.74903 0.83741 0.79505 1.21486 0.94056 0.95189 0.92814 1.21774 1.01656 0.98179 1.04389 1.21747 1.01978 0.94393 0.97296 1.21841 1.01237 0.96234 0.96930 0.92362 0.90358 0.89229 0.92022 0.89401 0.91781 0.91350 0.88235 0.91189 0.91830 0.89352 0.92229 0.92795 0.91642 0.91333 0.89180 0.76009 0.84536 0.88668 0.74642 1.22763 1.21827 0.82632 0.82363 0.88562 0.89747 0.91321 0.90972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 -0.05 9.50 127.77 1.21 1.16 16 2 N -0.59 -2.07 2.76 -952.95 -2.63 -4.71 16 3 C 0.64 5.65 7.70 129.79 1.00 6.65 16 4 O -0.59 -7.80 11.21 19.80 0.22 -7.57 16 5 O -0.37 -2.67 8.71 -55.45 -0.48 -3.15 16 6 C 0.13 0.51 1.13 -10.80 -0.01 0.50 16 7 C -0.18 -0.71 8.37 71.98 0.60 -0.11 16 8 C -0.14 0.14 8.85 71.98 0.64 0.78 16 9 C -0.18 -0.80 8.37 71.98 0.60 -0.19 16 10 C 0.16 0.08 2.52 44.99 0.11 0.19 16 11 H 0.09 0.38 6.90 -2.39 -0.02 0.36 16 12 C -0.12 0.05 5.05 30.59 0.15 0.21 16 13 C -0.13 0.47 5.54 30.60 0.17 0.64 16 14 C 0.15 -0.76 2.47 44.99 0.11 -0.65 16 15 H 0.10 -0.68 6.44 -2.39 -0.02 -0.70 16 16 N -0.71 0.34 4.40 -324.51 -1.43 -1.09 16 17 C 0.40 1.99 7.63 133.07 1.02 3.00 16 18 N -0.57 -5.68 10.39 -193.26 -2.01 -7.69 16 19 C 0.13 1.17 9.84 84.62 0.83 2.00 16 20 C -0.20 -1.13 5.39 -19.76 -0.11 -1.24 16 21 C -0.06 0.03 2.81 71.24 0.20 0.23 16 22 O -0.57 0.25 12.82 -148.98 -1.91 -1.66 16 23 Si 0.77 -0.79 29.88 68.60 2.05 1.26 16 24 C -0.01 -0.03 9.84 22.44 0.22 0.19 16 25 C -0.24 -0.47 8.85 22.50 0.20 -0.27 16 26 C -0.12 0.71 5.61 30.58 0.17 0.88 16 27 C -0.12 0.42 5.01 30.58 0.15 0.57 16 28 H 0.06 -0.03 8.14 -2.38 -0.02 -0.05 16 29 H 0.08 -0.02 7.37 -2.38 -0.02 -0.04 16 30 H 0.09 -0.35 6.43 -2.39 -0.02 -0.37 16 31 H 0.06 0.21 8.14 -2.39 -0.02 0.19 16 32 H 0.09 0.03 8.14 -2.39 -0.02 0.01 16 33 H 0.06 0.59 5.88 -2.39 -0.01 0.58 16 34 H 0.07 -0.07 8.14 -2.39 -0.02 -0.09 16 35 H 0.10 -0.45 8.14 -2.38 -0.02 -0.47 16 36 H 0.07 -0.09 8.14 -2.39 -0.02 -0.11 16 37 H 0.06 0.62 5.88 -2.39 -0.01 0.60 16 38 H 0.09 0.06 8.14 -2.38 -0.02 0.04 16 39 H 0.06 0.25 8.14 -2.38 -0.02 0.23 16 40 H 0.05 0.15 8.14 -2.39 -0.02 0.13 16 41 H 0.06 0.04 7.13 -2.39 -0.02 0.03 16 42 H 0.07 -0.13 7.69 -2.39 -0.02 -0.15 16 43 H 0.09 -0.48 8.14 -2.39 -0.02 -0.50 16 44 H 0.40 -0.20 6.99 -92.71 -0.65 -0.85 16 45 H 0.14 1.21 4.87 -2.91 -0.01 1.20 16 46 H 0.10 -0.48 7.96 -2.39 -0.02 -0.50 16 47 H 0.40 -4.42 8.74 -74.06 -0.65 -5.07 16 48 H -0.30 -2.11 7.05 99.48 0.70 -1.41 16 49 H -0.29 -1.41 7.11 99.48 0.71 -0.71 16 50 H 0.16 -0.25 8.06 -2.91 -0.02 -0.27 16 51 H 0.16 -0.54 6.10 -2.91 -0.02 -0.55 16 52 H 0.10 -0.71 8.14 -2.39 -0.02 -0.73 16 53 H 0.08 -0.54 8.14 -2.38 -0.02 -0.56 16 54 H 0.07 -0.10 8.14 -2.39 -0.02 -0.12 16 55 H 0.07 -0.30 5.02 -2.39 -0.01 -0.32 16 Total: 0.00 -21.01 416.11 0.74 -20.27 By element: Atomic # 1 Polarization: -9.85 SS G_CDS: -0.35 Total: -10.20 kcal Atomic # 6 Polarization: 7.26 SS G_CDS: 7.28 Total: 14.54 kcal Atomic # 7 Polarization: -7.42 SS G_CDS: -6.07 Total: -13.49 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: -2.17 Total: -12.38 kcal Atomic # 14 Polarization: -0.79 SS G_CDS: 2.05 Total: 1.26 kcal Total: -21.01 0.74 -20.27 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14055834_13915762.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.927 kcal (2) G-P(sol) polarization free energy of solvation -21.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds