Wall clock time and date at job start Mon Mar 8 2021 05:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34781 * 120.00426 * 2 1 4 4 O 1.21508 * 120.00358 * 179.97438 * 3 2 1 5 5 O 1.34641 * 119.99221 * 0.02562 * 3 2 1 6 6 C 1.45206 * 116.99503 * 179.97438 * 5 3 2 7 7 C 1.53002 * 109.47258 * 60.00121 * 6 5 3 8 8 C 1.53000 * 109.47135 * 179.97438 * 6 5 3 9 9 C 1.52994 * 109.47114 * 299.99982 * 6 5 3 10 10 C 1.46498 * 120.00189 * 179.97438 * 2 1 3 11 11 H 1.09000 * 109.47424 * 114.16962 * 10 2 1 12 12 C 1.53000 * 109.47540 * 234.17255 * 10 2 1 13 13 C 1.53006 * 109.46838 * 59.99740 * 12 10 2 14 14 C 1.52998 * 109.47033 * 60.00290 * 13 12 10 15 15 H 1.08999 * 109.47412 * 59.99557 * 14 13 12 16 16 N 1.46504 * 109.47179 * 179.97438 * 14 13 12 17 17 C 1.38607 * 120.00041 * 205.00049 * 16 14 13 18 18 N 1.29695 * 124.94810 * 359.69400 * 17 16 14 19 19 C 1.32123 * 116.86069 * 179.81473 * 18 17 16 20 20 C 1.33325 * 114.58278 * 0.47387 * 19 18 17 21 21 C 1.50693 * 125.95122 * 179.75276 * 20 19 18 22 22 O 1.42906 * 109.47155 * 299.97453 * 21 20 19 23 23 Si 1.86299 * 109.47156 * 179.97438 * 21 20 19 24 24 S 1.70963 * 124.94900 * 179.97438 * 17 16 14 25 25 C 1.53006 * 109.47203 * 300.00044 * 14 13 12 26 26 C 1.52998 * 109.47346 * 59.99875 * 25 14 13 27 27 H 1.08999 * 109.46833 * 275.92557 * 1 2 3 28 28 H 1.08995 * 109.46793 * 155.91711 * 1 2 3 29 29 H 1.08998 * 109.46691 * 35.92026 * 1 2 3 30 30 H 1.08997 * 109.47069 * 59.99493 * 7 6 5 31 31 H 1.09002 * 109.47352 * 180.02562 * 7 6 5 32 32 H 1.09002 * 109.46718 * 299.99880 * 7 6 5 33 33 H 1.09002 * 109.46979 * 60.00025 * 8 6 5 34 34 H 1.09002 * 109.47033 * 180.02562 * 8 6 5 35 35 H 1.08997 * 109.47155 * 300.00485 * 8 6 5 36 36 H 1.09002 * 109.47313 * 59.99844 * 9 6 5 37 37 H 1.09002 * 109.47121 * 179.97438 * 9 6 5 38 38 H 1.09004 * 109.47366 * 299.99660 * 9 6 5 39 39 H 1.08999 * 109.46994 * 179.97438 * 12 10 2 40 40 H 1.08997 * 109.47091 * 300.00218 * 12 10 2 41 41 H 1.08996 * 109.46808 * 180.02562 * 13 12 10 42 42 H 1.08998 * 109.47257 * 300.00367 * 13 12 10 43 43 H 0.96999 * 119.99381 * 24.99655 * 16 14 13 44 44 H 1.07999 * 122.70251 * 180.22250 * 19 18 17 45 45 H 1.08997 * 109.47487 * 59.97539 * 21 20 19 46 46 H 0.96695 * 113.99706 * 180.02562 * 22 21 20 47 47 H 1.48492 * 110.00250 * 298.68525 * 23 21 20 48 48 H 1.48503 * 109.99924 * 60.00030 * 23 21 20 49 49 H 1.08998 * 109.47309 * 180.02562 * 25 14 13 50 50 H 1.08999 * 109.46539 * 300.00048 * 25 14 13 51 51 H 1.08996 * 109.46993 * 180.02562 * 26 25 14 52 52 H 1.08998 * 109.47033 * 60.00016 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3541 1.1672 0.0005 5 8 1.4657 2.3332 0.0005 6 6 2.2566 3.5509 0.0011 7 6 3.1393 3.5864 -1.2482 8 6 1.3246 4.7643 0.0010 9 6 3.1392 3.5853 1.2503 10 6 2.1975 -1.2687 0.0006 11 1 2.7436 -1.3734 -0.9369 12 6 3.1838 -1.2877 1.1701 13 6 2.4172 -1.1408 2.4861 14 6 1.4295 -2.2999 2.6330 15 1 1.9744 -3.2439 2.6334 16 7 0.6959 -2.1596 3.8934 17 6 0.1521 -3.2772 4.5069 18 7 0.2297 -4.4880 4.0486 19 6 -0.3447 -5.4363 4.7672 20 6 -0.9427 -5.0051 5.8780 21 6 -1.6769 -5.8616 6.8771 22 8 -2.7658 -6.5222 6.2290 23 14 -2.3313 -4.7888 8.2525 24 16 -0.7244 -3.2596 5.9747 25 6 0.4432 -2.2810 1.4634 26 6 1.2097 -2.4279 0.1475 27 1 -0.3633 0.1061 1.0222 28 1 -0.3633 -0.9382 -0.4193 29 1 -0.3632 0.8322 -0.6029 30 1 2.5105 3.5619 -2.1381 31 1 3.7333 4.5004 -1.2476 32 1 3.8032 2.7220 -1.2485 33 1 0.6955 4.7393 0.8907 34 1 1.9183 5.6785 0.0009 35 1 0.6961 4.7396 -0.8892 36 1 3.8032 2.7208 1.2499 37 1 3.7333 4.4992 1.2505 38 1 2.5104 3.5601 2.1403 39 1 3.7285 -2.2319 1.1707 40 1 3.8875 -0.4619 1.0654 41 1 3.1199 -1.1539 3.3192 42 1 1.8722 -0.1969 2.4857 43 1 0.5908 -1.2845 4.2984 44 1 -0.3343 -6.4762 4.4759 45 1 -0.9946 -6.6048 7.2894 46 1 -3.2842 -7.0918 6.8136 47 1 -1.2064 -4.1209 8.9548 48 1 -3.2631 -3.7711 7.7034 49 1 -0.2608 -3.1065 1.5683 50 1 -0.1017 -1.3370 1.4630 51 1 0.5071 -2.4139 -0.6857 52 1 1.7547 -3.3718 0.1479 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14055834_15704118.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:18:38 Heat of formation + Delta-G solvation = -33.934813 kcal Electronic energy + Delta-G solvation = -33163.224793 eV Core-core repulsion = 28871.490976 eV Total energy + Delta-G solvation = -4291.733817 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 370.176 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.23938 -41.02447 -40.32042 -38.23643 -37.68183 -36.76983 -35.39920 -34.21963 -32.23302 -31.76925 -30.23396 -28.39661 -28.33844 -27.60568 -26.60214 -24.93211 -24.01756 -23.81572 -22.67617 -21.09218 -20.67820 -20.24174 -19.62022 -18.65951 -18.41369 -17.72378 -17.61328 -17.46828 -17.12606 -16.44168 -16.18360 -15.91382 -15.78803 -15.51209 -15.45883 -15.22456 -15.09877 -14.74028 -14.53333 -14.44040 -14.33377 -13.97502 -13.64929 -13.45006 -13.37222 -13.19319 -13.11721 -12.96446 -12.89569 -12.87235 -12.81978 -12.53931 -12.53090 -12.30447 -12.19766 -12.15684 -11.98360 -11.81058 -11.42451 -11.36486 -11.13627 -10.79244 -10.69190 -10.42103 -10.22306 -9.75091 -8.84584 -5.19685 -0.18437 -0.04749 0.51494 1.10988 1.23802 1.56499 1.74708 1.87173 1.92353 2.03118 2.80165 3.46713 3.52778 3.57491 3.62186 3.71960 3.76746 3.87355 3.90032 3.91859 3.98329 4.07135 4.17978 4.25417 4.35184 4.38385 4.48096 4.49749 4.51205 4.53353 4.57870 4.63342 4.66293 4.72892 4.76676 4.79274 4.82695 4.84291 4.89036 4.99324 5.03230 5.04216 5.08132 5.10327 5.21786 5.23130 5.24222 5.29441 5.45351 5.56871 5.76331 6.00389 6.30347 6.84833 6.92961 7.27878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.588 5.588 3 C 0.645 3.355 4 O -0.584 6.584 5 O -0.368 6.368 6 C 0.128 3.872 7 C -0.179 4.179 8 C -0.137 4.137 9 C -0.178 4.178 10 C 0.166 3.834 11 H 0.077 0.923 12 C -0.134 4.134 13 C -0.110 4.110 14 C 0.168 3.832 15 H 0.078 0.922 16 N -0.682 5.682 17 C 0.332 3.668 18 N -0.565 5.565 19 C 0.111 3.889 20 C -0.274 4.274 21 C -0.022 4.022 22 O -0.562 6.562 23 Si 0.754 3.246 24 S 0.046 5.954 25 C -0.144 4.144 26 C -0.114 4.114 27 H 0.065 0.935 28 H 0.100 0.900 29 H 0.071 0.929 30 H 0.059 0.941 31 H 0.084 0.916 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.097 0.903 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.084 0.916 38 H 0.059 0.941 39 H 0.085 0.915 40 H 0.080 0.920 41 H 0.066 0.934 42 H 0.059 0.941 43 H 0.419 0.581 44 H 0.189 0.811 45 H 0.106 0.894 46 H 0.405 0.595 47 H -0.276 1.276 48 H -0.286 1.286 49 H 0.059 0.941 50 H 0.089 0.911 51 H 0.091 0.909 52 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.324 -0.827 2.197 4.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.329 5.329 3 C 0.400 3.600 4 O -0.475 6.475 5 O -0.283 6.283 6 C 0.092 3.908 7 C -0.236 4.236 8 C -0.194 4.194 9 C -0.235 4.235 10 C 0.065 3.935 11 H 0.095 0.905 12 C -0.173 4.173 13 C -0.148 4.148 14 C 0.062 3.938 15 H 0.096 0.904 16 N -0.321 5.321 17 C -0.039 4.039 18 N -0.291 5.291 19 C -0.039 4.039 20 C -0.396 4.396 21 C -0.135 4.135 22 O -0.373 6.373 23 Si 0.659 3.341 24 S 0.294 5.706 25 C -0.182 4.182 26 C -0.152 4.152 27 H 0.083 0.917 28 H 0.118 0.882 29 H 0.089 0.911 30 H 0.078 0.922 31 H 0.103 0.897 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.115 0.885 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.103 0.897 38 H 0.078 0.922 39 H 0.104 0.896 40 H 0.098 0.902 41 H 0.085 0.915 42 H 0.078 0.922 43 H 0.257 0.743 44 H 0.206 0.794 45 H 0.123 0.877 46 H 0.257 0.743 47 H -0.202 1.202 48 H -0.213 1.213 49 H 0.078 0.922 50 H 0.107 0.893 51 H 0.109 0.891 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.717 1.037 2.061 3.565 hybrid contribution 0.477 -0.430 -0.492 0.809 sum -2.240 0.608 1.569 2.802 Atomic orbital electron populations 1.22192 0.77905 1.04561 1.02284 1.46858 1.07714 1.02716 1.75597 1.18222 0.83890 0.81594 0.76296 1.90846 1.13198 1.86993 1.56503 1.86322 1.41402 1.14096 1.86455 1.22295 0.91343 0.80820 0.96342 1.22460 1.00391 1.04233 0.96514 1.21878 0.99476 0.94556 1.03528 1.22450 1.00361 1.04253 0.96437 1.21103 0.92739 0.80761 0.98918 0.90527 1.21957 0.98336 1.04130 0.92869 1.21598 0.97564 0.97293 0.98355 1.21021 0.91734 0.99435 0.81623 0.90379 1.44289 1.57982 1.04918 1.24880 1.23935 0.95702 0.91042 0.93241 1.66490 1.29478 0.98214 1.34945 1.21589 0.92989 0.99827 0.89458 1.24625 1.15274 0.93890 1.05794 1.23809 0.91445 0.99868 0.98354 1.86459 1.43989 1.65539 1.41285 0.94245 0.80484 0.80073 0.79308 1.84151 1.54844 1.07999 1.23637 1.22395 0.98391 1.03812 0.93644 1.21799 0.98278 0.97354 0.97816 0.91678 0.88201 0.91075 0.92180 0.89676 0.91637 0.91310 0.88484 0.91304 0.91541 0.89741 0.92169 0.89646 0.90152 0.91498 0.92228 0.74279 0.79381 0.87674 0.74341 1.20193 1.21284 0.92226 0.89282 0.89108 0.88850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 -0.21 8.30 127.77 1.06 0.85 16 2 N -0.59 -0.73 2.28 -952.95 -2.17 -2.90 16 3 C 0.64 4.09 7.24 129.79 0.94 5.03 16 4 O -0.58 -6.13 9.58 19.82 0.19 -5.94 16 5 O -0.37 -1.97 8.82 -55.50 -0.49 -2.46 16 6 C 0.13 0.36 1.13 -10.79 -0.01 0.35 16 7 C -0.18 -0.59 8.37 71.98 0.60 0.01 16 8 C -0.14 0.25 8.85 71.98 0.64 0.89 16 9 C -0.18 -0.52 8.37 71.98 0.60 0.08 16 10 C 0.17 -0.05 3.05 44.99 0.14 0.08 16 11 H 0.08 0.06 8.14 -2.39 -0.02 0.04 16 12 C -0.13 -0.15 5.14 30.60 0.16 0.01 16 13 C -0.11 -0.02 5.23 30.60 0.16 0.14 16 14 C 0.17 0.07 2.58 44.99 0.12 0.19 16 15 H 0.08 0.29 7.77 -2.39 -0.02 0.27 16 16 N -0.68 -1.16 5.23 -330.39 -1.73 -2.89 16 17 C 0.33 2.10 8.06 179.32 1.45 3.55 16 18 N -0.56 -4.89 9.91 -202.02 -2.00 -6.90 16 19 C 0.11 0.78 11.22 83.54 0.94 1.72 16 20 C -0.27 -1.66 5.78 24.57 0.14 -1.52 16 21 C -0.02 0.00 2.98 71.23 0.21 0.22 16 22 O -0.56 0.27 12.85 -148.98 -1.91 -1.65 16 23 Si 0.75 -0.80 31.05 68.60 2.13 1.33 16 24 S 0.05 0.29 20.57 -56.49 -1.16 -0.87 16 25 C -0.14 0.21 4.96 30.60 0.15 0.36 16 26 C -0.11 0.42 4.91 30.60 0.15 0.57 16 27 H 0.06 -0.23 6.49 -2.39 -0.02 -0.25 16 28 H 0.10 -0.61 5.26 -2.39 -0.01 -0.62 16 29 H 0.07 -0.16 7.57 -2.39 -0.02 -0.18 16 30 H 0.06 0.18 8.14 -2.39 -0.02 0.16 16 31 H 0.08 0.01 8.14 -2.39 -0.02 -0.01 16 32 H 0.06 0.55 5.88 -2.39 -0.01 0.53 16 33 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 34 H 0.10 -0.47 8.14 -2.39 -0.02 -0.49 16 35 H 0.07 -0.13 8.14 -2.39 -0.02 -0.15 16 36 H 0.07 0.52 5.88 -2.39 -0.01 0.50 16 37 H 0.08 -0.01 8.14 -2.39 -0.02 -0.03 16 38 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 39 H 0.09 -0.06 8.14 -2.39 -0.02 -0.08 16 40 H 0.08 0.51 5.76 -2.39 -0.01 0.50 16 41 H 0.07 0.06 8.14 -2.39 -0.02 0.04 16 42 H 0.06 0.09 7.46 -2.39 -0.02 0.07 16 43 H 0.42 -0.63 8.73 -92.71 -0.81 -1.44 16 44 H 0.19 0.63 8.06 -2.91 -0.02 0.61 16 45 H 0.11 -0.51 7.96 -2.39 -0.02 -0.53 16 46 H 0.40 -4.60 8.74 -74.06 -0.65 -5.25 16 47 H -0.28 -1.18 7.11 99.48 0.71 -0.48 16 48 H -0.29 -1.90 7.11 99.48 0.71 -1.19 16 49 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 50 H 0.09 -0.22 3.95 -2.39 -0.01 -0.23 16 51 H 0.09 -0.53 6.67 -2.39 -0.02 -0.54 16 52 H 0.09 -0.38 8.14 -2.39 -0.02 -0.40 16 Total: 0.00 -18.64 404.54 -0.18 -18.81 By element: Atomic # 1 Polarization: -8.59 SS G_CDS: -0.47 Total: -9.06 kcal Atomic # 6 Polarization: 5.08 SS G_CDS: 7.44 Total: 12.52 kcal Atomic # 7 Polarization: -6.78 SS G_CDS: -5.90 Total: -12.68 kcal Atomic # 8 Polarization: -7.84 SS G_CDS: -2.21 Total: -10.05 kcal Atomic # 14 Polarization: -0.80 SS G_CDS: 2.13 Total: 1.33 kcal Atomic # 16 Polarization: 0.29 SS G_CDS: -1.16 Total: -0.87 kcal Total: -18.64 -0.18 -18.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14055834_15704118.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.123 kcal (2) G-P(sol) polarization free energy of solvation -18.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds