Wall clock time and date at job start Mon Mar 8 2021 05:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33326 * 125.94935 * 2 1 4 4 C 1.50705 * 122.71115 * 0.23961 * 3 2 1 5 5 O 1.42895 * 109.47041 * 45.42494 * 4 3 2 6 6 Si 1.86297 * 109.47235 * 165.42512 * 4 3 2 7 7 N 1.32124 * 114.58190 * 179.97438 * 3 2 1 8 8 C 1.29688 * 116.86064 * 0.02562 * 7 3 2 9 9 N 1.38606 * 124.94347 * 179.97438 * 8 7 3 10 10 C 1.46511 * 119.99917 * 180.02562 * 9 8 7 11 11 H 1.09007 * 109.46590 * 325.00091 * 10 9 8 12 12 C 1.52996 * 109.47087 * 84.99724 * 10 9 8 13 13 C 1.53002 * 109.47024 * 180.02562 * 12 10 9 14 14 C 1.52996 * 109.47002 * 300.00420 * 13 12 10 15 15 H 1.09006 * 109.47161 * 179.97438 * 14 13 12 16 16 N 1.46500 * 109.46874 * 299.99667 * 14 13 12 17 17 C 1.46494 * 120.00077 * 350.82795 * 16 14 13 18 18 C 1.34780 * 119.99798 * 170.83458 * 16 14 13 19 19 O 1.21509 * 120.00134 * 359.97438 * 18 16 14 20 20 O 1.34642 * 119.99847 * 180.02562 * 18 16 14 21 21 C 1.45201 * 116.99980 * 179.97438 * 20 18 16 22 22 C 1.52994 * 109.47088 * 59.99836 * 21 20 18 23 23 C 1.52997 * 109.47185 * 179.97438 * 21 20 18 24 24 C 1.53005 * 109.46847 * 300.00049 * 21 20 18 25 25 C 1.52996 * 109.47574 * 59.99916 * 14 13 12 26 26 C 1.52996 * 109.47084 * 205.00233 * 10 9 8 27 27 S 1.70963 * 110.10446 * 359.97438 * 8 7 3 28 28 H 1.08997 * 109.47296 * 84.10749 * 1 2 3 29 29 H 1.09000 * 109.47077 * 204.10756 * 1 2 3 30 30 H 1.09004 * 109.47325 * 324.10652 * 1 2 3 31 31 H 1.08999 * 109.46704 * 285.42331 * 4 3 2 32 32 H 0.96695 * 113.99970 * 180.02562 * 5 4 3 33 33 H 1.48494 * 110.00118 * 178.67994 * 6 4 3 34 34 H 1.48507 * 110.00143 * 299.99871 * 6 4 3 35 35 H 0.96998 * 120.00612 * 359.97438 * 9 8 7 36 36 H 1.09001 * 109.47026 * 299.99894 * 12 10 9 37 37 H 1.08999 * 109.47112 * 60.00318 * 12 10 9 38 38 H 1.08999 * 109.47125 * 179.97438 * 13 12 10 39 39 H 1.09010 * 109.46663 * 59.99794 * 13 12 10 40 40 H 1.08998 * 109.46824 * 95.52469 * 17 16 14 41 41 H 1.09006 * 109.47315 * 215.52398 * 17 16 14 42 42 H 1.08995 * 109.47243 * 335.52554 * 17 16 14 43 43 H 1.09004 * 109.47482 * 59.99940 * 22 21 20 44 44 H 1.09002 * 109.47239 * 180.02562 * 22 21 20 45 45 H 1.09008 * 109.47471 * 300.00074 * 22 21 20 46 46 H 1.09004 * 109.46639 * 60.00012 * 23 21 20 47 47 H 1.08997 * 109.47479 * 179.97438 * 23 21 20 48 48 H 1.08998 * 109.46940 * 300.00440 * 23 21 20 49 49 H 1.08995 * 109.47497 * 60.00356 * 24 21 20 50 50 H 1.08997 * 109.46884 * 180.02562 * 24 21 20 51 51 H 1.09000 * 109.47252 * 299.99697 * 24 21 20 52 52 H 1.08999 * 109.47719 * 180.02562 * 25 14 13 53 53 H 1.08999 * 109.47112 * 59.99890 * 25 14 13 54 54 H 1.08999 * 109.46990 * 299.99605 * 26 10 9 55 55 H 1.08999 * 109.47627 * 59.99633 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2897 1.0793 0.0000 4 6 1.7413 2.4830 0.0053 5 8 0.6905 2.5802 0.9688 6 14 3.1001 3.6790 0.4456 7 7 3.5850 0.8189 0.0005 8 6 3.9314 -0.4309 0.0005 9 7 5.2384 -0.8924 0.0005 10 6 5.5066 -2.3327 -0.0002 11 1 4.7454 -2.8443 0.5889 12 6 5.4766 -2.8564 -1.4374 13 6 5.7560 -4.3607 -1.4380 14 6 7.1343 -4.6236 -0.8280 15 1 7.3333 -5.6953 -0.8280 16 7 8.1577 -3.9365 -1.6197 17 6 7.8022 -3.3212 -2.9007 18 6 9.4264 -3.8705 -1.1694 19 8 9.7212 -4.3806 -0.1067 20 8 10.3669 -3.2386 -1.8967 21 6 11.7116 -3.2062 -1.3500 22 6 12.2235 -4.6367 -1.1699 23 6 12.6342 -2.4519 -2.3095 24 6 11.6941 -2.4963 0.0053 25 6 7.1644 -4.0999 0.6092 26 6 6.8851 -2.5951 0.6096 27 16 2.5413 -1.4260 0.0004 28 1 -0.3634 0.1055 -1.0222 29 1 -0.3633 -0.9380 0.4197 30 1 -0.3634 0.8325 0.6025 31 1 1.3512 2.7244 -0.9835 32 1 0.2897 3.4584 1.0264 33 1 2.5799 5.0696 0.4232 34 1 3.6406 3.3606 1.7917 35 1 5.9755 -0.2619 0.0001 36 1 4.4944 -2.6696 -1.8717 37 1 6.2377 -2.3449 -2.0265 38 1 5.7342 -4.7339 -2.4619 39 1 4.9945 -4.8719 -0.8489 40 1 7.5914 -2.2626 -2.7492 41 1 8.6323 -3.4300 -3.5989 42 1 6.9186 -3.8131 -3.3073 43 1 12.2359 -5.1425 -2.1354 44 1 13.2328 -4.6124 -0.7591 45 1 11.5663 -5.1745 -0.4865 46 1 12.2696 -1.4328 -2.4382 47 1 13.6436 -2.4272 -1.8989 48 1 12.6465 -2.9580 -3.2748 49 1 11.0370 -3.0341 0.6887 50 1 12.7037 -2.4716 0.4155 51 1 11.3294 -1.4772 -0.1230 52 1 8.1464 -4.2867 1.0436 53 1 6.4029 -4.6111 1.1982 54 1 7.6463 -2.0835 0.0205 55 1 6.9065 -2.2219 1.6335 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14055834_15704122.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:18:43 Heat of formation + Delta-G solvation = -37.904812 kcal Electronic energy + Delta-G solvation = -35494.588188 eV Core-core repulsion = 31047.144600 eV Total energy + Delta-G solvation = -4447.443588 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 384.192 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -42.19305 -41.06549 -40.47204 -38.33232 -37.69466 -36.76737 -35.38669 -34.27107 -32.80230 -32.15493 -30.42047 -28.96855 -28.36752 -28.30468 -27.42259 -25.65902 -24.78701 -24.00707 -23.57716 -22.62527 -21.11782 -20.40117 -19.97085 -19.28514 -18.61422 -18.34427 -17.65162 -17.57895 -17.31702 -17.04682 -16.38462 -16.17439 -16.06851 -15.71941 -15.52246 -15.46541 -15.18903 -15.08258 -14.55368 -14.48573 -14.22078 -14.08913 -13.93873 -13.89362 -13.55411 -13.44244 -13.34282 -13.32234 -13.16115 -13.09978 -13.02846 -12.90351 -12.83875 -12.77944 -12.49629 -12.42854 -12.27975 -12.08630 -11.91833 -11.78501 -11.65701 -11.44270 -11.33508 -10.97106 -10.68806 -10.63443 -10.44665 -10.04748 -9.68427 -8.62689 -4.80096 -0.01523 0.14758 0.72966 1.16516 1.31606 1.59866 1.78773 1.79840 1.89498 2.03007 2.85498 3.15440 3.52457 3.62535 3.74957 3.79668 3.83710 3.86376 3.93325 3.95010 4.07574 4.13506 4.23363 4.28360 4.29615 4.37443 4.39072 4.41689 4.52312 4.56208 4.58384 4.60580 4.69888 4.75944 4.79201 4.80268 4.83631 4.86813 4.87317 4.88464 4.97714 5.05133 5.07934 5.09687 5.11380 5.13831 5.24924 5.26719 5.27839 5.32504 5.33719 5.50033 5.63725 5.68228 6.29847 6.36337 6.61336 6.89354 7.33283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.250 4.250 3 C 0.087 3.913 4 C -0.042 4.042 5 O -0.549 6.549 6 Si 0.776 3.224 7 N -0.565 5.565 8 C 0.313 3.687 9 N -0.685 5.685 10 C 0.157 3.843 11 H 0.082 0.918 12 C -0.151 4.151 13 C -0.117 4.117 14 C 0.164 3.836 15 H 0.077 0.923 16 N -0.588 5.588 17 C 0.071 3.929 18 C 0.644 3.356 19 O -0.585 6.585 20 O -0.368 6.368 21 C 0.129 3.871 22 C -0.179 4.179 23 C -0.138 4.138 24 C -0.178 4.178 25 C -0.139 4.139 26 C -0.108 4.108 27 S 0.127 5.873 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.091 0.909 31 H 0.105 0.895 32 H 0.399 0.601 33 H -0.278 1.278 34 H -0.325 1.325 35 H 0.413 0.587 36 H 0.073 0.927 37 H 0.091 0.909 38 H 0.096 0.904 39 H 0.100 0.900 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.103 0.897 43 H 0.059 0.941 44 H 0.083 0.917 45 H 0.065 0.935 46 H 0.068 0.932 47 H 0.095 0.905 48 H 0.068 0.932 49 H 0.066 0.934 50 H 0.082 0.918 51 H 0.059 0.941 52 H 0.083 0.917 53 H 0.088 0.912 54 H 0.059 0.941 55 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.337 -1.574 -5.861 6.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.373 4.373 3 C -0.043 4.043 4 C -0.154 4.154 5 O -0.359 6.359 6 Si 0.683 3.317 7 N -0.293 5.293 8 C -0.058 4.058 9 N -0.324 5.324 10 C 0.052 3.948 11 H 0.100 0.900 12 C -0.190 4.190 13 C -0.155 4.155 14 C 0.063 3.937 15 H 0.095 0.905 16 N -0.329 5.329 17 C -0.070 4.070 18 C 0.399 3.601 19 O -0.476 6.476 20 O -0.283 6.283 21 C 0.093 3.907 22 C -0.236 4.236 23 C -0.195 4.195 24 C -0.235 4.235 25 C -0.177 4.177 26 C -0.146 4.146 27 S 0.376 5.624 28 H 0.096 0.904 29 H 0.085 0.915 30 H 0.109 0.891 31 H 0.122 0.878 32 H 0.250 0.750 33 H -0.205 1.205 34 H -0.254 1.254 35 H 0.251 0.749 36 H 0.091 0.909 37 H 0.109 0.891 38 H 0.114 0.886 39 H 0.118 0.882 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.121 0.879 43 H 0.078 0.922 44 H 0.102 0.898 45 H 0.084 0.916 46 H 0.087 0.913 47 H 0.114 0.886 48 H 0.087 0.913 49 H 0.085 0.915 50 H 0.101 0.899 51 H 0.078 0.922 52 H 0.101 0.899 53 H 0.106 0.894 54 H 0.077 0.923 55 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.526 -2.597 -4.920 5.589 hybrid contribution -0.699 1.412 0.843 1.787 sum -0.174 -1.185 -4.078 4.250 Atomic orbital electron populations 1.20281 0.85857 1.03581 1.03295 1.25410 1.02212 0.93379 1.16278 1.19056 0.86670 0.95925 1.02621 1.24079 0.98032 0.97269 0.96037 1.86449 1.50792 1.37843 1.60787 0.93025 0.81845 0.73195 0.83665 1.65607 1.17284 1.17589 1.28868 1.23428 0.92770 0.91291 0.98304 1.44192 1.01044 1.07658 1.79537 1.21230 0.97989 0.77927 0.97626 0.90001 1.22479 1.03907 0.96423 0.96159 1.21867 0.94362 0.95883 1.03396 1.21144 0.86533 0.95777 0.90253 0.90500 1.46866 1.04847 1.58074 1.23110 1.22189 1.03068 0.98312 0.83469 1.18260 0.82103 0.77840 0.81895 1.90828 1.80896 1.52021 1.23828 1.86320 1.20134 1.71368 1.50455 1.22265 0.77144 0.96757 0.94528 1.22458 1.02859 0.95502 1.02763 1.21876 0.98380 1.00314 0.98903 1.22451 1.04106 1.00421 0.96547 1.22043 1.04455 0.94526 0.96724 1.21550 0.94868 0.97394 1.00797 1.83703 0.95400 1.09476 1.73854 0.90355 0.91451 0.89053 0.87758 0.74982 1.20471 1.25419 0.74930 0.90861 0.89124 0.88563 0.88186 0.91568 0.91282 0.87862 0.92155 0.89816 0.91580 0.91298 0.88612 0.91258 0.91495 0.89884 0.92201 0.89891 0.89358 0.92275 0.91755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.14 9.98 71.24 0.71 0.57 16 2 C -0.25 -1.45 6.49 24.57 0.16 -1.29 16 3 C 0.09 0.65 6.04 41.41 0.25 0.90 16 4 C -0.04 -0.14 2.71 71.24 0.19 0.05 16 5 O -0.55 -1.57 10.28 -148.98 -1.53 -3.11 16 6 Si 0.78 3.57 31.87 68.60 2.19 5.76 16 7 N -0.57 -4.62 8.59 -189.86 -1.63 -6.25 16 8 C 0.31 1.45 8.22 179.32 1.47 2.93 16 9 N -0.68 -0.10 5.23 -330.39 -1.73 -1.82 16 10 C 0.16 -0.53 2.40 44.99 0.11 -0.43 16 11 H 0.08 -0.26 7.26 -2.38 -0.02 -0.28 16 12 C -0.15 0.96 5.03 30.59 0.15 1.12 16 13 C -0.12 0.98 4.90 30.59 0.15 1.13 16 14 C 0.16 -0.56 3.11 44.99 0.14 -0.42 16 15 H 0.08 -0.18 8.14 -2.38 -0.02 -0.20 16 16 N -0.59 0.62 2.32 -952.97 -2.21 -1.59 16 17 C 0.07 -0.39 8.36 127.77 1.07 0.67 16 18 C 0.64 3.10 7.03 129.79 0.91 4.01 16 19 O -0.58 -5.29 9.37 19.81 0.19 -5.10 16 20 O -0.37 -1.57 8.81 -55.51 -0.49 -2.06 16 21 C 0.13 0.28 1.13 -10.80 -0.01 0.26 16 22 C -0.18 -0.47 8.37 71.98 0.60 0.13 16 23 C -0.14 0.32 8.85 71.98 0.64 0.96 16 24 C -0.18 -0.45 8.37 71.98 0.60 0.15 16 25 C -0.14 0.18 5.09 30.61 0.16 0.34 16 26 C -0.11 0.18 5.23 30.61 0.16 0.34 16 27 S 0.13 0.32 21.69 -56.49 -1.23 -0.91 16 28 H 0.08 -0.03 8.14 -2.39 -0.02 -0.05 16 29 H 0.07 0.04 8.14 -2.39 -0.02 0.02 16 30 H 0.09 0.29 5.74 -2.38 -0.01 0.28 16 31 H 0.10 -0.17 7.96 -2.39 -0.02 -0.19 16 32 H 0.40 -2.29 8.74 -74.06 -0.65 -2.93 16 33 H -0.28 -1.59 7.11 99.48 0.71 -0.88 16 34 H -0.33 -4.96 7.11 99.48 0.71 -4.25 16 35 H 0.41 -0.14 8.73 -92.71 -0.81 -0.95 16 36 H 0.07 -0.41 8.04 -2.39 -0.02 -0.43 16 37 H 0.09 -0.56 4.14 -2.39 -0.01 -0.57 16 38 H 0.10 -1.03 6.55 -2.39 -0.02 -1.05 16 39 H 0.10 -1.01 8.14 -2.38 -0.02 -1.03 16 40 H 0.07 -0.40 6.36 -2.39 -0.02 -0.41 16 41 H 0.07 -0.29 7.56 -2.38 -0.02 -0.30 16 42 H 0.10 -1.00 5.48 -2.39 -0.01 -1.01 16 43 H 0.06 0.13 8.14 -2.38 -0.02 0.11 16 44 H 0.08 -0.03 8.14 -2.39 -0.02 -0.05 16 45 H 0.07 0.50 5.88 -2.38 -0.01 0.48 16 46 H 0.07 -0.17 8.14 -2.39 -0.02 -0.19 16 47 H 0.10 -0.50 8.14 -2.39 -0.02 -0.52 16 48 H 0.07 -0.17 8.14 -2.39 -0.02 -0.19 16 49 H 0.07 0.48 5.88 -2.39 -0.01 0.47 16 50 H 0.08 -0.02 8.14 -2.39 -0.02 -0.04 16 51 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 52 H 0.08 0.40 5.55 -2.39 -0.01 0.39 16 53 H 0.09 -0.34 8.14 -2.39 -0.02 -0.36 16 54 H 0.06 0.03 7.30 -2.39 -0.02 0.01 16 55 H 0.06 0.00 8.14 -2.39 -0.02 -0.01 16 Total: 0.00 -18.20 420.68 0.52 -17.68 By element: Atomic # 1 Polarization: -13.53 SS G_CDS: -0.49 Total: -14.03 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: 7.47 Total: 11.44 kcal Atomic # 7 Polarization: -4.10 SS G_CDS: -5.57 Total: -9.67 kcal Atomic # 8 Polarization: -8.44 SS G_CDS: -1.83 Total: -10.27 kcal Atomic # 14 Polarization: 3.57 SS G_CDS: 2.19 Total: 5.76 kcal Atomic # 16 Polarization: 0.32 SS G_CDS: -1.23 Total: -0.91 kcal Total: -18.20 0.52 -17.68 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14055834_15704122.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.229 kcal (2) G-P(sol) polarization free energy of solvation -18.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds