Wall clock time and date at job start Mon Mar 8 2021 05:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.46654 * 2 1 4 4 C 1.52997 * 109.47504 * 240.00538 * 2 1 3 5 5 Si 1.86293 * 109.47434 * 119.99986 * 2 1 3 6 6 C 1.86304 * 109.47232 * 300.00583 * 5 2 1 7 7 C 1.86299 * 109.47270 * 180.02562 * 5 2 1 8 8 O 1.63095 * 109.47223 * 60.00325 * 5 2 1 9 9 C 1.42900 * 114.00344 * 180.02562 * 8 5 2 10 10 C 1.53002 * 109.47111 * 180.02562 * 9 8 5 11 11 C 1.53515 * 114.16603 * 184.99799 * 10 9 8 12 12 N 1.47486 * 87.93048 * 220.32973 * 11 10 9 13 13 C 1.38409 * 111.00017 * 138.70793 * 12 11 10 14 14 N 1.32492 * 119.21436 * 359.72932 * 13 12 11 15 15 C 1.32282 * 120.73507 * 179.72504 * 14 13 12 16 16 C 1.38596 * 119.19855 * 0.53903 * 15 14 13 17 17 C 1.50704 * 120.72308 * 179.75956 * 16 15 14 18 18 O 1.42900 * 109.47519 * 119.97743 * 17 16 15 19 19 Si 1.86302 * 109.46698 * 359.97348 * 17 16 15 20 20 H 1.48501 * 109.46799 * 60.00480 * 19 17 16 21 21 H 1.48500 * 109.46707 * 179.97438 * 19 17 16 22 22 H 1.48492 * 109.47443 * 300.00419 * 19 17 16 23 23 C 1.38608 * 118.55699 * 359.73282 * 16 15 14 24 24 N 1.32273 * 119.20230 * 0.02562 * 23 16 15 25 25 C 1.47480 * 87.83684 * 27.00978 * 12 11 10 26 26 H 1.08997 * 109.47038 * 299.99522 * 1 2 3 27 27 H 1.08996 * 109.47075 * 59.99985 * 1 2 3 28 28 H 1.09006 * 109.46696 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46871 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47125 * 300.00173 * 3 2 1 31 31 H 1.08998 * 109.46835 * 59.99935 * 3 2 1 32 32 H 1.09006 * 109.46853 * 299.99548 * 4 2 1 33 33 H 1.09001 * 109.47228 * 59.99244 * 4 2 1 34 34 H 1.08998 * 109.47362 * 179.97438 * 4 2 1 35 35 H 1.09001 * 109.47233 * 180.02562 * 6 5 2 36 36 H 1.09006 * 109.46964 * 299.99844 * 6 5 2 37 37 H 1.08998 * 109.47245 * 59.99568 * 6 5 2 38 38 H 1.08998 * 109.47250 * 300.00103 * 7 5 2 39 39 H 1.08999 * 109.47153 * 60.00403 * 7 5 2 40 40 H 1.09001 * 109.47331 * 179.97438 * 7 5 2 41 41 H 1.09004 * 109.47228 * 60.00107 * 9 8 5 42 42 H 1.09000 * 109.46743 * 300.00209 * 9 8 5 43 43 H 1.08994 * 113.38394 * 318.07592 * 10 9 8 44 44 H 1.09005 * 113.47774 * 105.56422 * 11 10 9 45 45 H 1.08997 * 113.53532 * 335.10577 * 11 10 9 46 46 H 1.08005 * 120.39794 * 180.30020 * 15 14 13 47 47 H 1.08999 * 109.46581 * 239.97792 * 17 16 15 48 48 H 0.96704 * 113.99366 * 300.00479 * 18 17 16 49 49 H 1.08002 * 120.39949 * 180.02562 * 23 16 15 50 50 H 1.09005 * 113.47310 * 87.75367 * 25 12 11 51 51 H 1.08990 * 113.48150 * 218.22188 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7211 -1.2493 5 14 2.1511 -0.8782 1.5210 6 6 1.5300 -0.0001 3.0423 7 6 4.0141 -0.8775 1.5214 8 8 1.6076 -2.4159 1.5211 9 6 2.0288 -3.1813 2.6519 10 6 1.4641 -4.5994 2.5468 11 6 1.7507 -5.4822 3.7696 12 7 2.0052 -6.5971 2.8382 13 6 3.1019 -7.3393 3.2408 14 7 3.7555 -6.9846 4.3374 15 6 4.8043 -7.6757 4.7526 16 6 5.2231 -8.7748 4.0195 17 6 6.4169 -9.5833 4.4582 18 8 6.0155 -10.9334 4.6990 19 14 7.1186 -8.8555 6.0230 20 1 6.0844 -8.8819 7.0883 21 1 8.2946 -9.6525 6.4556 22 1 7.5358 -7.4525 5.7728 23 6 4.5198 -9.1146 2.8745 24 7 3.4766 -8.3841 2.5173 25 6 2.3886 -5.5926 1.8287 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1299 1.4426 0.0005 30 1 1.6765 1.9564 -0.8900 31 1 1.6765 1.9564 0.8900 32 1 1.6768 -1.7488 -1.2493 33 1 1.6767 -0.2073 -2.1392 34 1 3.1301 -0.7207 -1.2495 35 1 1.8938 -0.5136 3.9322 36 1 1.8933 1.0277 3.0423 37 1 0.4400 -0.0001 3.0423 38 1 4.3778 -1.3910 0.6314 39 1 4.3770 0.1503 1.5217 40 1 4.3775 -1.3909 2.4116 41 1 1.6639 -2.7113 3.5652 42 1 3.1177 -3.2250 2.6757 43 1 0.4285 -4.6287 2.2082 44 1 0.8798 -5.6384 4.4062 45 1 2.6333 -5.1752 4.3308 46 1 5.3302 -7.3845 5.6499 47 1 7.1759 -9.5639 3.6762 48 1 5.3401 -11.0265 5.3848 49 1 4.8200 -9.9656 2.2811 50 1 3.4416 -5.3142 1.8712 51 1 2.0583 -5.8422 0.8205 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14186586_12175864.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:23:48 Heat of formation + Delta-G solvation = -21.883791 kcal Electronic energy + Delta-G solvation = -27759.016773 eV Core-core repulsion = 24011.967748 eV Total energy + Delta-G solvation = -3747.049024 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.189 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.90080 -40.94243 -38.08316 -37.58525 -36.80674 -35.00148 -33.85030 -31.02985 -29.36452 -29.04548 -27.82721 -27.40822 -27.35125 -27.32375 -25.69800 -25.19402 -22.95077 -20.86727 -20.40526 -19.29569 -18.90738 -18.07303 -17.72282 -16.96835 -16.71983 -16.44088 -16.31776 -16.11320 -15.83739 -15.35200 -14.96330 -14.84916 -14.80106 -14.70705 -14.49288 -14.38138 -13.93384 -13.74626 -13.50751 -13.36671 -13.17868 -13.13068 -12.93686 -12.91523 -12.69905 -12.55174 -12.37343 -12.26386 -12.22320 -12.04136 -12.01154 -11.75218 -11.67900 -11.65978 -11.37562 -11.31282 -11.09426 -10.77054 -10.29358 -10.13988 -10.03767 -9.87198 -0.42171 -0.09421 1.11539 1.45069 1.48694 1.51359 1.81338 1.91282 2.14125 2.14665 2.42999 2.50590 2.84980 3.31473 3.35985 3.44313 3.47855 3.56512 3.77594 4.03228 4.12470 4.14579 4.15004 4.23213 4.34176 4.38051 4.48295 4.52479 4.57420 4.61447 4.64658 4.68616 4.74545 4.75767 4.79988 4.81449 4.83769 4.85301 4.89906 5.02074 5.06193 5.11162 5.11583 5.18776 5.23719 5.36486 5.43070 5.46392 5.56252 5.57979 5.61261 5.66256 5.97155 6.62815 6.88800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.383 4.383 3 C -0.141 4.141 4 C -0.137 4.137 5 Si 1.318 2.682 6 C -0.518 4.518 7 C -0.520 4.520 8 O -0.635 6.635 9 C 0.090 3.910 10 C -0.101 4.101 11 C 0.018 3.982 12 N -0.434 5.434 13 C 0.448 3.552 14 N -0.550 5.550 15 C 0.157 3.843 16 C -0.236 4.236 17 C -0.062 4.062 18 O -0.548 6.548 19 Si 0.972 3.028 20 H -0.249 1.249 21 H -0.267 1.267 22 H -0.250 1.250 23 C 0.190 3.810 24 N -0.537 5.537 25 C 0.028 3.972 26 H 0.061 0.939 27 H 0.046 0.954 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.049 0.951 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.046 0.954 34 H 0.059 0.941 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.082 0.918 42 H 0.065 0.935 43 H 0.120 0.880 44 H 0.101 0.899 45 H 0.107 0.893 46 H 0.184 0.816 47 H 0.138 0.862 48 H 0.390 0.610 49 H 0.194 0.806 50 H 0.075 0.925 51 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.987 1.771 3.028 4.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.426 4.426 3 C -0.198 4.198 4 C -0.194 4.194 5 Si 1.448 2.552 6 C -0.619 4.619 7 C -0.621 4.621 8 O -0.594 6.594 9 C 0.014 3.986 10 C -0.120 4.120 11 C -0.110 4.110 12 N -0.155 5.155 13 C 0.093 3.907 14 N -0.268 5.268 15 C -0.009 4.009 16 C -0.242 4.242 17 C -0.174 4.174 18 O -0.355 6.355 19 Si 0.795 3.205 20 H -0.173 1.173 21 H -0.192 1.192 22 H -0.173 1.173 23 C 0.023 3.977 24 N -0.253 5.253 25 C -0.098 4.098 26 H 0.080 0.920 27 H 0.065 0.935 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.096 0.904 40 H 0.089 0.911 41 H 0.099 0.901 42 H 0.083 0.917 43 H 0.138 0.862 44 H 0.120 0.880 45 H 0.125 0.875 46 H 0.200 0.800 47 H 0.155 0.845 48 H 0.239 0.761 49 H 0.211 0.789 50 H 0.093 0.907 51 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 2.278 1.848 2.711 3.994 hybrid contribution 0.821 0.141 0.325 0.895 sum 3.100 1.989 3.036 4.773 Atomic orbital electron populations 1.21540 0.94204 1.01852 1.01801 1.25939 1.00453 1.02964 1.13216 1.21605 1.01212 0.94789 1.02199 1.21541 1.00910 1.00082 0.96882 0.76149 0.62235 0.52823 0.64029 1.27093 1.06984 1.09772 1.18101 1.27133 1.25662 1.04924 1.04372 1.85352 1.79482 1.46500 1.48092 1.22104 0.98326 0.90459 0.87688 1.22815 1.01427 0.92294 0.95489 1.23991 1.04092 0.87217 0.95713 1.66083 1.23923 1.15155 1.10351 1.22095 0.89967 0.91026 0.87638 1.68369 1.09496 1.32063 1.16906 1.23396 0.90279 0.89573 0.97693 1.22204 1.02614 1.00443 0.98897 1.24863 0.95769 0.85397 1.11353 1.86524 1.62708 1.23598 1.62622 0.85345 0.80153 0.79327 0.75665 1.17278 1.19154 1.17346 1.23521 0.86604 0.95415 0.92192 1.68191 1.16728 1.06501 1.33865 1.23916 0.99537 0.88869 0.97523 0.92027 0.93483 0.92402 0.91913 0.93219 0.91761 0.92458 0.93445 0.92245 0.90863 0.90505 0.91008 0.91359 0.90445 0.91147 0.90051 0.91665 0.86224 0.88031 0.87458 0.79951 0.84470 0.76100 0.78920 0.90703 0.88511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.03 7.85 71.98 0.56 0.54 16 2 C -0.38 0.29 0.53 -10.79 -0.01 0.28 16 3 C -0.14 0.20 7.85 71.98 0.56 0.77 16 4 C -0.14 -0.07 7.85 71.98 0.56 0.49 16 5 Si 1.32 -4.13 8.45 68.60 0.58 -3.55 16 6 C -0.52 1.53 8.50 113.37 0.96 2.50 16 7 C -0.52 1.21 8.50 113.37 0.96 2.18 16 8 O -0.63 0.51 8.56 -148.98 -1.28 -0.76 16 9 C 0.09 -0.28 5.04 71.98 0.36 0.08 16 10 C -0.10 0.11 4.35 -10.45 -0.05 0.06 16 11 C 0.02 0.01 6.95 83.58 0.58 0.59 16 12 N -0.43 -2.50 6.51 -738.78 -4.81 -7.31 16 13 C 0.45 3.22 6.78 261.49 1.77 4.99 16 14 N -0.55 -2.44 8.20 -197.98 -1.62 -4.07 16 15 C 0.16 -0.02 9.92 84.71 0.84 0.82 16 16 C -0.24 0.41 5.40 -19.69 -0.11 0.31 16 17 C -0.06 0.35 2.85 71.24 0.20 0.56 16 18 O -0.55 2.14 12.79 -148.98 -1.91 0.24 16 19 Si 0.97 -5.61 25.15 68.60 1.73 -3.88 16 20 H -0.25 1.36 7.11 99.48 0.71 2.07 16 21 H -0.27 0.50 7.11 99.48 0.71 1.20 16 22 H -0.25 1.30 7.11 99.48 0.71 2.01 16 23 C 0.19 0.30 10.92 84.71 0.93 1.23 16 24 N -0.54 -4.15 10.47 -197.98 -2.07 -6.22 16 25 C 0.03 0.06 7.24 83.58 0.60 0.67 16 26 H 0.06 -0.08 7.79 -2.39 -0.02 -0.10 16 27 H 0.05 0.06 8.14 -2.39 -0.02 0.04 16 28 H 0.06 0.04 7.97 -2.38 -0.02 0.02 16 29 H 0.06 -0.18 7.79 -2.39 -0.02 -0.20 16 30 H 0.05 0.00 8.14 -2.39 -0.02 -0.02 16 31 H 0.06 -0.20 7.79 -2.39 -0.02 -0.22 16 32 H 0.06 0.06 7.97 -2.38 -0.02 0.04 16 33 H 0.05 0.07 8.14 -2.39 -0.02 0.05 16 34 H 0.06 -0.05 7.79 -2.39 -0.02 -0.07 16 35 H 0.07 -0.30 7.48 -2.39 -0.02 -0.32 16 36 H 0.08 -0.26 7.79 -2.38 -0.02 -0.27 16 37 H 0.07 -0.16 7.79 -2.39 -0.02 -0.18 16 38 H 0.07 -0.09 7.79 -2.39 -0.02 -0.11 16 39 H 0.08 -0.22 7.79 -2.39 -0.02 -0.24 16 40 H 0.07 -0.22 7.48 -2.39 -0.02 -0.24 16 41 H 0.08 -0.53 7.21 -2.38 -0.02 -0.55 16 42 H 0.07 -0.32 6.88 -2.39 -0.02 -0.34 16 43 H 0.12 -0.08 8.14 -2.39 -0.02 -0.10 16 44 H 0.10 -0.08 8.14 -2.38 -0.02 -0.10 16 45 H 0.11 -0.02 6.58 -2.39 -0.02 -0.03 16 46 H 0.18 -0.93 5.04 -2.91 -0.01 -0.94 16 47 H 0.14 -1.13 7.96 -2.39 -0.02 -1.15 16 48 H 0.39 -3.72 8.70 -74.05 -0.64 -4.36 16 49 H 0.19 -0.55 8.06 -2.91 -0.02 -0.57 16 50 H 0.07 0.13 7.62 -2.38 -0.02 0.11 16 51 H 0.10 0.27 8.14 -2.39 -0.02 0.26 16 Total: 0.00 -14.16 402.08 0.38 -13.78 By element: Atomic # 1 Polarization: -5.30 SS G_CDS: 1.01 Total: -4.29 kcal Atomic # 6 Polarization: 7.31 SS G_CDS: 8.75 Total: 16.06 kcal Atomic # 7 Polarization: -9.09 SS G_CDS: -8.51 Total: -17.60 kcal Atomic # 8 Polarization: 2.65 SS G_CDS: -3.18 Total: -0.53 kcal Atomic # 14 Polarization: -9.73 SS G_CDS: 2.31 Total: -7.43 kcal Total: -14.16 0.38 -13.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14186586_12175864.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.104 kcal (2) G-P(sol) polarization free energy of solvation -14.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds