Wall clock time and date at job start Mon Mar 8 2021 05:24:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 109.47176 * 2 1 4 4 C 1.53002 * 109.46903 * 239.99942 * 2 1 3 5 5 Si 1.86302 * 109.47131 * 119.99957 * 2 1 3 6 6 C 1.86296 * 109.47051 * 300.00166 * 5 2 1 7 7 C 1.86292 * 109.47008 * 179.97438 * 5 2 1 8 8 O 1.63098 * 109.46908 * 59.99789 * 5 2 1 9 9 C 1.42903 * 113.99860 * 179.97438 * 8 5 2 10 10 C 1.53002 * 109.47040 * 180.02562 * 9 8 5 11 11 C 1.53517 * 114.16814 * 184.99747 * 10 9 8 12 12 N 1.47480 * 87.93111 * 220.32801 * 11 10 9 13 13 C 1.39008 * 110.99982 * 138.70515 * 12 11 10 14 14 C 1.39094 * 119.70646 * 180.02562 * 13 12 11 15 15 C 1.38338 * 119.09590 * 179.72553 * 14 13 12 16 16 C 1.38841 * 118.50666 * 0.51579 * 15 14 13 17 17 C 1.50706 * 120.33392 * 179.73537 * 16 15 14 18 18 O 1.42895 * 109.47147 * 64.72539 * 17 16 15 19 19 Si 1.86299 * 109.46748 * 184.72181 * 17 16 15 20 20 H 1.48503 * 109.47188 * 60.00070 * 19 17 16 21 21 H 1.48506 * 109.47139 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47505 * 299.99883 * 19 17 16 23 23 C 1.38058 * 119.32775 * 359.45858 * 16 15 14 24 24 N 1.31946 * 120.85683 * 0.30030 * 23 16 15 25 25 C 1.47485 * 87.83750 * 27.01112 * 12 11 10 26 26 H 1.09003 * 109.46902 * 299.99978 * 1 2 3 27 27 H 1.08999 * 109.46760 * 59.99992 * 1 2 3 28 28 H 1.09002 * 109.46751 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47332 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.46901 * 300.00345 * 3 2 1 31 31 H 1.09005 * 109.47263 * 59.99660 * 3 2 1 32 32 H 1.09000 * 109.47219 * 300.00062 * 4 2 1 33 33 H 1.09007 * 109.47087 * 60.00235 * 4 2 1 34 34 H 1.09006 * 109.46628 * 179.97438 * 4 2 1 35 35 H 1.08994 * 109.47121 * 180.02562 * 6 5 2 36 36 H 1.09000 * 109.46997 * 299.99769 * 6 5 2 37 37 H 1.09006 * 109.47535 * 59.99947 * 6 5 2 38 38 H 1.08996 * 109.47712 * 299.99844 * 7 5 2 39 39 H 1.09000 * 109.47135 * 60.00173 * 7 5 2 40 40 H 1.09002 * 109.47364 * 180.02562 * 7 5 2 41 41 H 1.08992 * 109.47250 * 60.00249 * 9 8 5 42 42 H 1.09007 * 109.46926 * 299.99902 * 9 8 5 43 43 H 1.08997 * 113.38249 * 318.08048 * 10 9 8 44 44 H 1.08997 * 113.47023 * 105.56458 * 11 10 9 45 45 H 1.08990 * 113.53107 * 335.10436 * 11 10 9 46 46 H 1.08000 * 120.45048 * 359.97438 * 14 13 12 47 47 H 1.07999 * 120.74847 * 180.24619 * 15 14 13 48 48 H 1.09000 * 109.47318 * 304.71652 * 17 16 15 49 49 H 0.96695 * 114.00385 * 59.99326 * 18 17 16 50 50 H 1.07997 * 119.57643 * 180.27459 * 23 16 15 51 51 H 1.09008 * 113.47246 * 87.75536 * 25 12 11 52 52 H 1.08993 * 113.47684 * 218.21732 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 14 2.1511 -0.8782 1.5212 6 6 1.5301 0.0000 3.0422 7 6 4.0140 -0.8789 1.5207 8 8 1.6074 -2.4159 1.5211 9 6 2.0295 -3.1817 2.6514 10 6 1.4645 -4.5997 2.5465 11 6 1.7522 -5.4829 3.7688 12 7 2.0057 -6.5975 2.8369 13 6 3.1074 -7.3431 3.2401 14 6 3.5089 -8.4418 2.4876 15 6 4.6105 -9.1715 2.8973 16 6 5.2691 -8.7828 4.0560 17 6 6.4701 -9.5519 4.5433 18 8 7.5307 -9.4310 3.5933 19 14 7.0243 -8.8639 6.1835 20 1 5.9221 -8.9894 7.1708 21 1 8.2074 -9.6220 6.6641 22 1 7.3848 -7.4322 6.0236 23 6 4.8162 -7.6813 4.7542 24 7 3.7655 -7.0008 4.3371 25 6 2.3883 -5.5927 1.8274 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1301 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 1.6767 -1.7489 -1.2493 33 1 1.6767 -0.2074 -2.1393 34 1 3.1301 -0.7209 -1.2495 35 1 1.8937 -0.5135 3.9322 36 1 1.8934 1.0276 3.0422 37 1 0.4400 0.0000 3.0423 38 1 4.3770 -1.3930 0.6308 39 1 4.3777 0.1486 1.5205 40 1 4.3774 -1.3931 2.4105 41 1 1.6654 -2.7119 3.5650 42 1 3.1184 -3.2255 2.6744 43 1 0.4287 -4.6287 2.2086 44 1 0.8817 -5.6391 4.4060 45 1 2.6351 -5.1761 4.3293 46 1 2.9705 -8.7190 1.5933 47 1 4.9478 -10.0270 2.3310 48 1 6.2055 -10.6027 4.6609 49 1 7.8182 -8.5208 3.4384 50 1 5.3282 -7.3727 5.6536 51 1 3.4415 -5.3146 1.8691 52 1 2.0572 -5.8421 0.8193 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14186586_13915762.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:24:03 Heat of formation + Delta-G solvation = -41.818002 kcal Electronic energy + Delta-G solvation = -27653.139693 eV Core-core repulsion = 23970.652167 eV Total energy + Delta-G solvation = -3682.487526 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.194 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.44012 -40.44353 -37.98176 -37.46177 -36.80721 -33.70857 -33.28430 -30.51453 -29.35423 -29.05227 -27.82736 -27.36865 -27.25346 -26.97538 -25.29951 -24.26172 -22.45733 -20.76070 -20.40132 -18.80258 -18.31846 -17.73411 -17.67379 -16.75443 -16.58781 -16.41015 -16.02929 -16.01293 -15.73387 -15.05625 -14.89068 -14.83174 -14.78290 -14.65154 -14.36864 -14.20885 -13.93915 -13.63432 -13.52161 -13.37260 -13.30617 -13.17378 -12.93628 -12.91510 -12.65278 -12.49834 -12.40801 -12.33150 -12.19839 -12.00407 -11.96413 -11.67742 -11.64964 -11.30288 -11.27618 -10.98095 -10.93402 -10.47615 -10.45084 -10.29482 -10.03878 -9.52050 -0.13687 0.17308 1.14114 1.42973 1.50171 1.51437 1.81427 1.90127 2.13503 2.43557 2.48515 2.71842 3.15554 3.42521 3.49309 3.65105 3.72353 3.85787 3.96892 4.10065 4.14258 4.14566 4.26476 4.33282 4.39112 4.47859 4.49202 4.53859 4.57030 4.68188 4.70174 4.73861 4.74434 4.77417 4.78984 4.79867 4.82678 4.83774 4.85306 5.02055 5.02100 5.11150 5.11586 5.15407 5.16528 5.23814 5.36385 5.42995 5.45282 5.46850 5.56756 5.61153 5.64968 6.05699 6.65798 6.75704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.382 4.382 3 C -0.141 4.141 4 C -0.137 4.137 5 Si 1.318 2.682 6 C -0.519 4.519 7 C -0.519 4.519 8 O -0.634 6.634 9 C 0.090 3.910 10 C -0.106 4.106 11 C 0.012 3.988 12 N -0.441 5.441 13 C 0.259 3.741 14 C -0.166 4.166 15 C -0.032 4.032 16 C -0.185 4.185 17 C -0.067 4.067 18 O -0.549 6.549 19 Si 0.973 3.027 20 H -0.259 1.259 21 H -0.270 1.270 22 H -0.248 1.248 23 C 0.103 3.897 24 N -0.525 5.525 25 C 0.021 3.979 26 H 0.059 0.941 27 H 0.047 0.953 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.049 0.951 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.047 0.953 34 H 0.059 0.941 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.076 0.924 40 H 0.068 0.932 41 H 0.075 0.925 42 H 0.064 0.936 43 H 0.116 0.884 44 H 0.091 0.909 45 H 0.099 0.901 46 H 0.151 0.849 47 H 0.159 0.841 48 H 0.130 0.870 49 H 0.389 0.611 50 H 0.161 0.839 51 H 0.075 0.925 52 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.676 0.858 0.295 1.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.425 4.425 3 C -0.198 4.198 4 C -0.194 4.194 5 Si 1.447 2.553 6 C -0.621 4.621 7 C -0.620 4.620 8 O -0.593 6.593 9 C 0.014 3.986 10 C -0.125 4.125 11 C -0.116 4.116 12 N -0.160 5.160 13 C 0.029 3.971 14 C -0.188 4.188 15 C -0.058 4.058 16 C -0.188 4.188 17 C -0.178 4.178 18 O -0.356 6.356 19 Si 0.797 3.203 20 H -0.183 1.183 21 H -0.195 1.195 22 H -0.172 1.172 23 C -0.054 4.054 24 N -0.238 5.238 25 C -0.106 4.106 26 H 0.078 0.922 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.095 0.905 40 H 0.087 0.913 41 H 0.093 0.907 42 H 0.082 0.918 43 H 0.134 0.866 44 H 0.109 0.891 45 H 0.117 0.883 46 H 0.169 0.831 47 H 0.177 0.823 48 H 0.148 0.852 49 H 0.238 0.762 50 H 0.178 0.822 51 H 0.093 0.907 52 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 0.915 0.584 1.239 1.648 hybrid contribution 0.827 0.528 -0.555 1.127 sum 1.742 1.112 0.684 2.177 Atomic orbital electron populations 1.21542 0.94221 1.01855 1.01782 1.25916 1.00425 1.02936 1.13179 1.21606 1.01234 0.94805 1.02187 1.21541 1.00937 1.00101 0.96798 0.76161 0.62284 0.52867 0.63978 1.27117 1.06948 1.09800 1.18211 1.27124 1.25610 1.04905 1.04391 1.85352 1.79446 1.46441 1.48071 1.22094 0.98245 0.90783 0.87459 1.22814 1.01404 0.92244 0.96009 1.23843 1.03361 0.88597 0.95775 1.66646 1.25024 1.14846 1.09533 1.20724 0.90635 0.94513 0.91181 1.21880 0.98773 0.95624 1.02475 1.21644 0.91835 0.98255 0.94064 1.21383 1.00713 0.98683 0.98057 1.24854 0.85492 1.05249 1.02235 1.86504 1.51868 1.33988 1.63245 0.85340 0.79921 0.79834 0.75180 1.18332 1.19459 1.17211 1.22679 0.92265 0.91617 0.98853 1.67552 1.08606 1.31621 1.16023 1.23967 0.99375 0.89547 0.97665 0.92151 0.93399 0.92380 0.91887 0.93156 0.91851 0.92372 0.93401 0.92204 0.91080 0.90505 0.91070 0.91192 0.90459 0.91290 0.90705 0.91792 0.86589 0.89058 0.88304 0.83127 0.82329 0.85228 0.76190 0.82184 0.90688 0.88039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.02 7.85 71.98 0.56 0.54 16 2 C -0.38 0.31 0.53 -10.79 -0.01 0.31 16 3 C -0.14 0.20 7.85 71.98 0.56 0.77 16 4 C -0.14 -0.01 7.85 71.98 0.56 0.55 16 5 Si 1.32 -3.73 8.45 68.60 0.58 -3.15 16 6 C -0.52 1.14 8.50 113.37 0.96 2.10 16 7 C -0.52 1.09 8.50 113.37 0.96 2.05 16 8 O -0.63 0.37 8.56 -148.98 -1.28 -0.91 16 9 C 0.09 -0.21 5.04 71.98 0.36 0.15 16 10 C -0.11 0.11 4.35 -10.45 -0.05 0.06 16 11 C 0.01 0.01 6.96 83.58 0.58 0.60 16 12 N -0.44 -1.49 6.41 -731.79 -4.69 -6.19 16 13 C 0.26 1.17 5.85 133.04 0.78 1.95 16 14 C -0.17 -0.28 10.00 22.50 0.22 -0.05 16 15 C -0.03 0.02 9.83 22.44 0.22 0.24 16 16 C -0.19 0.09 5.36 -19.76 -0.11 -0.01 16 17 C -0.07 0.22 2.82 71.24 0.20 0.42 16 18 O -0.55 1.18 12.84 -148.98 -1.91 -0.73 16 19 Si 0.97 -2.80 25.16 68.60 1.73 -1.07 16 20 H -0.26 0.26 7.11 99.48 0.71 0.96 16 21 H -0.27 -0.15 7.11 99.48 0.71 0.55 16 22 H -0.25 0.77 7.05 99.48 0.70 1.47 16 23 C 0.10 0.20 9.84 84.63 0.83 1.03 16 24 N -0.53 -2.70 8.20 -193.27 -1.59 -4.29 16 25 C 0.02 0.00 7.22 83.58 0.60 0.61 16 26 H 0.06 -0.07 7.79 -2.39 -0.02 -0.09 16 27 H 0.05 0.05 8.14 -2.39 -0.02 0.03 16 28 H 0.06 0.04 7.96 -2.39 -0.02 0.02 16 29 H 0.06 -0.18 7.79 -2.39 -0.02 -0.20 16 30 H 0.05 -0.01 8.14 -2.39 -0.02 -0.03 16 31 H 0.06 -0.18 7.79 -2.38 -0.02 -0.20 16 32 H 0.06 0.03 7.97 -2.39 -0.02 0.01 16 33 H 0.05 0.05 8.14 -2.38 -0.02 0.03 16 34 H 0.06 -0.07 7.79 -2.38 -0.02 -0.09 16 35 H 0.07 -0.21 7.48 -2.39 -0.02 -0.23 16 36 H 0.08 -0.20 7.79 -2.39 -0.02 -0.22 16 37 H 0.07 -0.11 7.79 -2.38 -0.02 -0.13 16 38 H 0.07 -0.10 7.79 -2.39 -0.02 -0.12 16 39 H 0.08 -0.20 7.79 -2.39 -0.02 -0.22 16 40 H 0.07 -0.18 7.48 -2.39 -0.02 -0.20 16 41 H 0.07 -0.37 7.21 -2.39 -0.02 -0.39 16 42 H 0.06 -0.26 6.87 -2.38 -0.02 -0.27 16 43 H 0.12 -0.06 8.14 -2.39 -0.02 -0.08 16 44 H 0.09 0.08 8.14 -2.39 -0.02 0.06 16 45 H 0.10 0.17 6.62 -2.39 -0.02 0.15 16 46 H 0.15 -0.14 8.06 -2.91 -0.02 -0.16 16 47 H 0.16 -0.65 8.06 -2.91 -0.02 -0.67 16 48 H 0.13 -0.67 7.96 -2.39 -0.02 -0.69 16 49 H 0.39 -3.19 8.70 -74.06 -0.64 -3.84 16 50 H 0.16 -0.20 4.87 -2.91 -0.01 -0.22 16 51 H 0.07 0.00 7.62 -2.38 -0.02 -0.02 16 52 H 0.10 -0.10 8.14 -2.39 -0.02 -0.12 16 Total: 0.00 -11.01 407.27 1.09 -9.91 By element: Atomic # 1 Polarization: -5.86 SS G_CDS: 0.98 Total: -4.87 kcal Atomic # 6 Polarization: 4.03 SS G_CDS: 7.27 Total: 11.30 kcal Atomic # 7 Polarization: -4.20 SS G_CDS: -6.28 Total: -10.48 kcal Atomic # 8 Polarization: 1.55 SS G_CDS: -3.19 Total: -1.64 kcal Atomic # 14 Polarization: -6.53 SS G_CDS: 2.31 Total: -4.22 kcal Total: -11.01 1.09 -9.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14186586_13915762.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.905 kcal (2) G-P(sol) polarization free energy of solvation -11.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds