Wall clock time and date at job start Mon Mar 8 2021 05:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46853 * 2 1 4 4 C 1.52994 * 109.47289 * 239.99922 * 2 1 3 5 5 Si 1.86303 * 109.46740 * 119.99743 * 2 1 3 6 6 C 1.86294 * 109.47305 * 300.00009 * 5 2 1 7 7 C 1.86299 * 109.46778 * 179.97438 * 5 2 1 8 8 O 1.63094 * 109.46956 * 60.00464 * 5 2 1 9 9 C 1.42906 * 114.00266 * 179.97438 * 8 5 2 10 10 C 1.52999 * 109.47557 * 180.02562 * 9 8 5 11 11 C 1.53509 * 114.16928 * 185.00159 * 10 9 8 12 12 N 1.47478 * 87.92998 * 220.32546 * 11 10 9 13 13 C 1.38610 * 111.00448 * 138.70199 * 12 11 10 14 14 N 1.29692 * 124.94302 * 0.30671 * 13 12 11 15 15 C 1.32117 * 116.86604 * 180.22594 * 14 13 12 16 16 C 1.33327 * 114.57651 * 359.48172 * 15 14 13 17 17 C 1.50706 * 125.95118 * 180.24995 * 16 15 14 18 18 O 1.42895 * 109.46819 * 245.02502 * 17 16 15 19 19 Si 1.86296 * 109.47078 * 5.02453 * 17 16 15 20 20 H 1.48501 * 109.47392 * 300.00051 * 19 17 16 21 21 H 1.48507 * 109.47230 * 60.00349 * 19 17 16 22 22 H 1.48497 * 109.47318 * 179.97438 * 19 17 16 23 23 S 1.70958 * 124.95635 * 179.97438 * 13 12 11 24 24 C 1.47480 * 87.83939 * 27.01065 * 12 11 10 25 25 H 1.09004 * 109.47548 * 300.00149 * 1 2 3 26 26 H 1.09006 * 109.47220 * 60.00313 * 1 2 3 27 27 H 1.09004 * 109.47269 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47038 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.47275 * 299.99814 * 3 2 1 30 30 H 1.09008 * 109.47249 * 60.00092 * 3 2 1 31 31 H 1.09004 * 109.47271 * 300.00373 * 4 2 1 32 32 H 1.09006 * 109.47181 * 59.99742 * 4 2 1 33 33 H 1.08999 * 109.47037 * 179.97438 * 4 2 1 34 34 H 1.09004 * 109.47081 * 179.97438 * 6 5 2 35 35 H 1.08994 * 109.47525 * 300.00370 * 6 5 2 36 36 H 1.08999 * 109.46976 * 60.00670 * 6 5 2 37 37 H 1.08996 * 109.47530 * 300.00516 * 7 5 2 38 38 H 1.09004 * 109.47096 * 60.00635 * 7 5 2 39 39 H 1.08998 * 109.47068 * 180.02562 * 7 5 2 40 40 H 1.08999 * 109.46548 * 59.99527 * 9 8 5 41 41 H 1.08999 * 109.46708 * 300.00177 * 9 8 5 42 42 H 1.09006 * 113.25139 * 317.94737 * 10 9 8 43 43 H 1.09005 * 113.47585 * 105.56432 * 11 10 9 44 44 H 1.08992 * 113.53131 * 335.10172 * 11 10 9 45 45 H 1.08002 * 122.71469 * 179.75697 * 15 14 13 46 46 H 1.08999 * 109.47067 * 125.02368 * 17 16 15 47 47 H 0.96710 * 113.99725 * 179.97438 * 18 17 16 48 48 H 1.09001 * 113.47739 * 87.75139 * 24 12 11 49 49 H 1.09003 * 113.47804 * 218.22381 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 14 2.1509 -0.8782 1.5212 6 6 1.5299 0.0001 3.0423 7 6 4.0139 -0.8789 1.5209 8 8 1.6073 -2.4159 1.5212 9 6 2.0293 -3.1817 2.6515 10 6 1.4645 -4.5997 2.5465 11 6 1.7519 -5.4828 3.7689 12 7 2.0056 -6.5974 2.8370 13 6 3.1041 -7.3409 3.2392 14 7 3.8170 -7.1010 4.2957 15 6 4.8348 -7.9114 4.5258 16 6 4.9815 -8.8862 3.6281 17 6 6.0477 -9.9511 3.6445 18 8 6.9000 -9.7894 2.5090 19 14 7.0551 -9.7971 5.2041 20 1 7.6932 -8.4570 5.2509 21 1 6.1694 -9.9652 6.3842 22 1 8.1054 -10.8468 5.2207 23 16 3.7119 -8.7124 2.4193 24 6 2.3883 -5.5927 1.8275 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 3.1299 1.4425 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9564 0.8901 31 1 1.6766 -1.7489 -1.2492 32 1 1.6766 -0.2074 -2.1392 33 1 3.1300 -0.7208 -1.2494 34 1 1.8928 -0.5141 3.9323 35 1 1.8931 1.0277 3.0423 36 1 0.4399 0.0000 3.0423 37 1 4.3769 -1.3929 0.6309 38 1 4.3776 0.1487 1.5207 39 1 4.3772 -1.3931 2.4106 40 1 1.6651 -2.7117 3.5651 41 1 3.1182 -3.2255 2.6746 42 1 0.4278 -4.6262 2.2106 43 1 0.8814 -5.6391 4.4060 44 1 2.6348 -5.1760 4.3294 45 1 5.4921 -7.7963 5.3750 46 1 5.5794 -10.9347 3.6102 47 1 7.6115 -10.4421 2.4551 48 1 3.4414 -5.3144 1.8693 49 1 2.0572 -5.8421 0.8194 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14186586_15704118.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:24:20 Heat of formation + Delta-G solvation = -35.905470 kcal Electronic energy + Delta-G solvation = -26054.145912 eV Core-core repulsion = 22461.067020 eV Total energy + Delta-G solvation = -3593.078893 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 344.150 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.22194 -40.17118 -37.92918 -37.56437 -36.80507 -33.09181 -30.94478 -29.37288 -29.04940 -27.82683 -27.40428 -27.35404 -27.17818 -25.49982 -24.10438 -21.22327 -20.43675 -20.32731 -19.49776 -18.58712 -17.72679 -17.59751 -16.91173 -16.50983 -16.25180 -15.92624 -15.76067 -15.48775 -15.25098 -14.83814 -14.78054 -14.67096 -14.59581 -14.33216 -13.92744 -13.61639 -13.44565 -13.37707 -13.18657 -13.05896 -12.93079 -12.91506 -12.70986 -12.55728 -12.41415 -12.34526 -12.13895 -12.03107 -11.98823 -11.68511 -11.66182 -11.37221 -11.32397 -11.11761 -10.73387 -10.51687 -10.29870 -10.27076 -10.03716 -9.57192 -0.52614 -0.01819 0.56646 1.26251 1.44777 1.48928 1.50862 1.54885 1.81457 1.91000 2.13406 2.47335 2.62775 3.15697 3.30828 3.39757 3.73763 3.83502 4.10007 4.13314 4.14935 4.15330 4.21682 4.33605 4.38988 4.48066 4.50100 4.55425 4.61275 4.64147 4.73334 4.73765 4.77850 4.79888 4.80785 4.84093 4.85832 4.93421 5.02518 5.11591 5.12000 5.13241 5.23669 5.36640 5.43524 5.46419 5.55775 5.60593 5.65402 5.72700 6.47373 6.74568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.382 4.382 3 C -0.141 4.141 4 C -0.137 4.137 5 Si 1.319 2.681 6 C -0.519 4.519 7 C -0.521 4.521 8 O -0.633 6.633 9 C 0.089 3.911 10 C -0.100 4.100 11 C 0.019 3.981 12 N -0.414 5.414 13 C 0.168 3.832 14 N -0.519 5.519 15 C 0.041 3.959 16 C -0.233 4.233 17 C -0.050 4.050 18 O -0.563 6.563 19 Si 0.991 3.009 20 H -0.266 1.266 21 H -0.257 1.257 22 H -0.240 1.240 23 S 0.203 5.797 24 C 0.014 3.986 25 H 0.060 0.940 26 H 0.047 0.953 27 H 0.058 0.942 28 H 0.061 0.939 29 H 0.050 0.950 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.047 0.953 33 H 0.058 0.942 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.076 0.924 39 H 0.067 0.933 40 H 0.079 0.921 41 H 0.063 0.937 42 H 0.124 0.876 43 H 0.102 0.898 44 H 0.096 0.904 45 H 0.184 0.816 46 H 0.101 0.899 47 H 0.404 0.596 48 H 0.078 0.922 49 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.858 -1.194 0.739 2.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.424 4.424 3 C -0.198 4.198 4 C -0.194 4.194 5 Si 1.448 2.552 6 C -0.620 4.620 7 C -0.622 4.622 8 O -0.592 6.592 9 C 0.013 3.987 10 C -0.119 4.119 11 C -0.111 4.111 12 N -0.136 5.136 13 C -0.200 4.200 14 N -0.239 5.239 15 C -0.112 4.112 16 C -0.355 4.355 17 C -0.161 4.161 18 O -0.373 6.373 19 Si 0.812 3.188 20 H -0.190 1.190 21 H -0.181 1.181 22 H -0.163 1.163 23 S 0.459 5.541 24 C -0.114 4.114 25 H 0.079 0.921 26 H 0.066 0.934 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.069 0.931 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.095 0.905 39 H 0.086 0.914 40 H 0.096 0.904 41 H 0.081 0.919 42 H 0.142 0.858 43 H 0.120 0.880 44 H 0.114 0.886 45 H 0.201 0.799 46 H 0.118 0.882 47 H 0.255 0.745 48 H 0.096 0.904 49 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 0.825 -1.459 0.479 1.743 hybrid contribution 1.376 0.553 0.666 1.626 sum 2.201 -0.906 1.145 2.641 Atomic orbital electron populations 1.21542 0.94130 1.01911 1.01806 1.25909 1.00493 1.02905 1.13131 1.21607 1.01196 0.94829 1.02210 1.21542 1.00898 1.00142 0.96829 0.76139 0.62096 0.52875 0.64052 1.27106 1.07022 1.09774 1.18133 1.27156 1.25854 1.04863 1.04330 1.85346 1.79407 1.46410 1.48033 1.22103 0.98272 0.90689 0.87643 1.22795 1.01617 0.92125 0.95368 1.23916 1.03711 0.87637 0.95845 1.66631 1.22133 1.14797 1.10047 1.25954 0.97022 1.01159 0.95816 1.66856 1.07189 1.30270 1.19556 1.21679 0.96525 0.91466 1.01525 1.25618 1.03830 1.04960 1.01123 1.24264 0.93454 0.97298 1.01086 1.86467 1.45950 1.59551 1.45310 0.85120 0.78739 0.81002 0.73949 1.19000 1.18089 1.16311 1.83974 1.20964 1.23042 1.26137 1.24179 0.99939 0.89457 0.97816 0.92092 0.93415 0.92303 0.91967 0.93133 0.91814 0.92321 0.93382 0.92294 0.91056 0.90516 0.90944 0.91274 0.90485 0.91376 0.90351 0.91868 0.85834 0.87993 0.88611 0.79890 0.88173 0.74466 0.90353 0.87438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.02 7.85 71.98 0.56 0.55 16 2 C -0.38 0.25 0.53 -10.80 -0.01 0.24 16 3 C -0.14 0.17 7.85 71.98 0.56 0.73 16 4 C -0.14 -0.06 7.85 71.98 0.56 0.51 16 5 Si 1.32 -3.45 8.45 68.60 0.58 -2.87 16 6 C -0.52 1.13 8.50 113.37 0.96 2.09 16 7 C -0.52 0.71 8.50 113.37 0.96 1.67 16 8 O -0.63 0.41 8.56 -148.98 -1.28 -0.86 16 9 C 0.09 -0.22 5.04 71.98 0.36 0.14 16 10 C -0.10 0.14 4.34 -10.45 -0.05 0.09 16 11 C 0.02 0.02 7.05 83.58 0.59 0.61 16 12 N -0.41 -1.71 6.52 -738.82 -4.82 -6.52 16 13 C 0.17 1.09 6.40 179.32 1.15 2.24 16 14 N -0.52 -4.06 8.97 -202.03 -1.81 -5.87 16 15 C 0.04 0.22 10.07 83.54 0.84 1.06 16 16 C -0.23 -0.90 5.95 24.58 0.15 -0.75 16 17 C -0.05 0.09 3.07 71.24 0.22 0.31 16 18 O -0.56 0.70 12.86 -148.98 -1.92 -1.21 16 19 Si 0.99 -3.07 25.78 68.60 1.77 -1.30 16 20 H -0.27 -0.11 7.11 99.48 0.71 0.60 16 21 H -0.26 0.34 7.11 99.48 0.71 1.04 16 22 H -0.24 1.06 7.11 99.48 0.71 1.77 16 23 S 0.20 0.93 23.21 -56.49 -1.31 -0.38 16 24 C 0.01 0.01 7.24 83.58 0.60 0.62 16 25 H 0.06 -0.08 7.79 -2.39 -0.02 -0.10 16 26 H 0.05 0.05 8.14 -2.38 -0.02 0.03 16 27 H 0.06 0.03 7.97 -2.38 -0.02 0.01 16 28 H 0.06 -0.15 7.79 -2.39 -0.02 -0.17 16 29 H 0.05 0.00 8.14 -2.39 -0.02 -0.02 16 30 H 0.06 -0.17 7.79 -2.38 -0.02 -0.19 16 31 H 0.06 0.04 7.97 -2.38 -0.02 0.02 16 32 H 0.05 0.06 8.14 -2.38 -0.02 0.04 16 33 H 0.06 -0.04 7.79 -2.39 -0.02 -0.06 16 34 H 0.07 -0.21 7.48 -2.39 -0.02 -0.23 16 35 H 0.08 -0.20 7.79 -2.39 -0.02 -0.21 16 36 H 0.07 -0.12 7.79 -2.39 -0.02 -0.14 16 37 H 0.07 -0.04 7.79 -2.39 -0.02 -0.05 16 38 H 0.08 -0.15 7.79 -2.38 -0.02 -0.16 16 39 H 0.07 -0.11 7.48 -2.39 -0.02 -0.13 16 40 H 0.08 -0.42 7.21 -2.39 -0.02 -0.44 16 41 H 0.06 -0.23 6.87 -2.39 -0.02 -0.24 16 42 H 0.12 -0.21 8.14 -2.38 -0.02 -0.23 16 43 H 0.10 -0.03 8.14 -2.38 -0.02 -0.05 16 44 H 0.10 0.20 6.91 -2.39 -0.02 0.18 16 45 H 0.18 0.32 5.87 -2.91 -0.02 0.30 16 46 H 0.10 -0.58 7.96 -2.39 -0.02 -0.60 16 47 H 0.40 -4.40 8.74 -74.05 -0.65 -5.05 16 48 H 0.08 0.09 7.62 -2.39 -0.02 0.08 16 49 H 0.11 -0.06 8.14 -2.39 -0.02 -0.08 16 Total: 0.00 -12.74 399.15 -0.27 -13.01 By element: Atomic # 1 Polarization: -5.11 SS G_CDS: 1.03 Total: -4.08 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: 7.48 Total: 10.09 kcal Atomic # 7 Polarization: -5.77 SS G_CDS: -6.63 Total: -12.40 kcal Atomic # 8 Polarization: 1.12 SS G_CDS: -3.19 Total: -2.07 kcal Atomic # 14 Polarization: -6.52 SS G_CDS: 2.35 Total: -4.17 kcal Atomic # 16 Polarization: 0.93 SS G_CDS: -1.31 Total: -0.38 kcal Total: -12.74 -0.27 -13.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14186586_15704118.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.896 kcal (2) G-P(sol) polarization free energy of solvation -12.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds