Wall clock time and date at job start Mon Mar 8 2021 05:24:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.33322 * 125.95416 * 2 1 4 4 C 1.50703 * 122.70961 * 0.02711 * 3 2 1 5 5 O 1.42896 * 109.47055 * 329.73414 * 4 3 2 6 6 Si 1.86304 * 109.46911 * 209.73307 * 4 3 2 7 7 H 1.48503 * 109.46928 * 179.97438 * 6 4 3 8 8 H 1.48494 * 109.47278 * 299.99835 * 6 4 3 9 9 H 1.48496 * 109.47072 * 60.00160 * 6 4 3 10 10 N 1.32124 * 114.57741 * 179.75763 * 3 2 1 11 11 C 1.29677 * 116.86758 * 0.24992 * 10 3 2 12 12 N 1.38612 * 124.94933 * 180.02562 * 11 10 3 13 13 C 1.47486 * 111.00078 * 84.02871 * 12 11 10 14 14 C 1.53509 * 87.93268 * 138.70266 * 13 12 11 15 15 C 1.53001 * 114.17001 * 220.32567 * 14 13 12 16 16 O 1.42894 * 109.47359 * 268.84364 * 15 14 13 17 17 Si 1.63094 * 114.00272 * 179.97438 * 16 15 14 18 18 C 1.86305 * 109.47091 * 299.99949 * 17 16 15 19 19 C 1.86301 * 109.47090 * 59.99809 * 17 16 15 20 20 C 1.86302 * 109.47381 * 179.97438 * 17 16 15 21 21 C 1.53001 * 109.46953 * 59.99912 * 20 17 16 22 22 C 1.52997 * 109.47012 * 180.02562 * 20 17 16 23 23 C 1.52998 * 109.46894 * 300.00021 * 20 17 16 24 24 C 1.47482 * 110.99879 * 179.97438 * 12 11 10 25 25 S 1.70974 * 110.10326 * 359.97438 * 11 10 3 26 26 H 1.08999 * 109.47347 * 89.99260 * 1 2 3 27 27 H 1.08995 * 109.46914 * 209.99925 * 1 2 3 28 28 H 1.09011 * 109.46560 * 329.99763 * 1 2 3 29 29 H 1.09002 * 109.47152 * 89.73222 * 4 3 2 30 30 H 0.96703 * 114.00193 * 180.02562 * 5 4 3 31 31 H 1.09003 * 113.47020 * 253.47025 * 13 12 11 32 32 H 1.09006 * 113.47422 * 23.93221 * 13 12 11 33 33 H 1.09001 * 114.34072 * 87.63336 * 14 13 12 34 34 H 1.09006 * 109.46659 * 28.84358 * 15 14 13 35 35 H 1.09001 * 109.46842 * 148.83847 * 15 14 13 36 36 H 1.09000 * 109.47065 * 60.00155 * 18 17 16 37 37 H 1.09003 * 109.47068 * 179.97438 * 18 17 16 38 38 H 1.08996 * 109.47035 * 299.99654 * 18 17 16 39 39 H 1.09002 * 109.46745 * 60.00346 * 19 17 16 40 40 H 1.09003 * 109.47342 * 180.02562 * 19 17 16 41 41 H 1.09000 * 109.47407 * 300.00055 * 19 17 16 42 42 H 1.08995 * 109.47014 * 60.00391 * 21 20 17 43 43 H 1.09008 * 109.46601 * 180.02562 * 21 20 17 44 44 H 1.08992 * 109.47146 * 299.99647 * 21 20 17 45 45 H 1.08996 * 109.47359 * 60.00246 * 22 20 17 46 46 H 1.09000 * 109.46671 * 180.02562 * 22 20 17 47 47 H 1.09002 * 109.47476 * 299.99468 * 22 20 17 48 48 H 1.09003 * 109.47101 * 60.00116 * 23 20 17 49 49 H 1.08999 * 109.46926 * 180.02562 * 23 20 17 50 50 H 1.08996 * 109.47461 * 299.99744 * 23 20 17 51 51 H 1.08995 * 113.47734 * 336.06682 * 24 12 11 52 52 H 1.09003 * 113.47527 * 106.47222 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2899 1.0792 0.0000 4 6 1.7416 2.4830 0.0006 5 8 0.4841 2.5034 -0.6779 6 14 2.9360 3.6165 -0.8707 7 1 2.3954 4.9997 -0.8707 8 1 4.2427 3.5953 -0.1656 9 1 3.1216 3.1582 -2.2709 10 7 3.5851 0.8186 0.0051 11 6 3.9315 -0.4311 0.0043 12 7 5.2384 -0.8928 0.0096 13 6 5.7781 -0.9364 1.3815 14 6 6.4240 -2.2826 1.0251 15 6 6.3499 -3.3278 2.1400 16 8 7.5175 -3.2349 2.9584 17 14 7.5523 -4.3051 4.1887 18 6 6.0808 -4.0256 5.2966 19 6 7.4957 -6.0377 3.5063 20 6 9.1203 -4.0749 5.1680 21 6 9.1674 -2.6520 5.7284 22 6 9.1531 -5.0793 6.3216 23 6 10.3284 -4.3048 4.2578 24 6 5.2781 -2.3671 0.0076 25 16 2.5412 -1.4262 -0.0027 26 1 -0.3634 0.0001 -1.0276 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8901 0.5139 29 1 1.6053 2.8194 1.0284 30 1 0.0721 3.3775 -0.7164 31 1 6.5023 -0.1485 1.5884 32 1 5.0077 -1.0140 2.1488 33 1 7.4142 -2.2010 0.5767 34 1 5.4640 -3.1471 2.7489 35 1 6.2921 -4.3238 1.7010 36 1 5.1635 -4.1606 4.7234 37 1 6.1037 -4.7412 6.1186 38 1 6.1139 -3.0119 5.6959 39 1 8.3567 -6.2011 2.8581 40 1 7.5184 -6.7530 4.3285 41 1 6.5785 -6.1727 2.9331 42 1 8.3068 -2.4882 6.3768 43 1 10.0851 -2.5173 6.3010 44 1 9.1443 -1.9368 4.9062 45 1 9.1198 -6.0928 5.9221 46 1 10.0704 -4.9443 6.8948 47 1 8.2925 -4.9160 6.9703 48 1 10.3052 -3.5895 3.4356 49 1 11.2458 -4.1706 4.8308 50 1 10.2949 -5.3185 3.8585 51 1 4.3745 -2.8263 0.4083 52 1 5.5775 -2.7921 -0.9505 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14186586_15704122.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:24:35 Heat of formation + Delta-G solvation = -40.839385 kcal Electronic energy + Delta-G solvation = -28241.405769 eV Core-core repulsion = 24492.575307 eV Total energy + Delta-G solvation = -3748.830462 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 358.166 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.15666 -40.71132 -37.87674 -37.46924 -36.80394 -33.72187 -31.58182 -29.45962 -29.19194 -29.03490 -27.82170 -27.40080 -27.33789 -26.40273 -25.62791 -23.31297 -21.18211 -20.41731 -20.00296 -19.52095 -18.28531 -17.75967 -17.47949 -16.95850 -16.66441 -16.20148 -15.98444 -15.78312 -15.34936 -15.07394 -14.90362 -14.82118 -14.72103 -14.47954 -14.23541 -13.98156 -13.86716 -13.56387 -13.51336 -13.43512 -13.34167 -13.15364 -12.99967 -12.93433 -12.91203 -12.73338 -12.55874 -12.42439 -12.37237 -12.25700 -12.06107 -11.77657 -11.68408 -11.67220 -11.39763 -11.33716 -11.03524 -10.69670 -10.42860 -10.27820 -10.12312 -10.03028 -9.29996 -0.43194 0.05902 0.50986 1.05875 1.41379 1.49811 1.51800 1.60456 1.81568 2.05057 2.15812 2.20355 2.49488 3.10785 3.19641 3.54577 3.83058 3.92745 4.01560 4.09417 4.14679 4.14794 4.20363 4.26452 4.34134 4.39426 4.46974 4.48285 4.54634 4.59673 4.73885 4.76704 4.78705 4.81457 4.81957 4.83088 4.84068 4.85585 4.91553 4.98817 5.02270 5.07638 5.11262 5.11709 5.23377 5.29352 5.36853 5.43348 5.46482 5.55663 5.59151 5.62761 5.67865 6.62652 6.80161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C -0.198 4.198 3 C 0.046 3.954 4 C -0.032 4.032 5 O -0.550 6.550 6 Si 0.996 3.004 7 H -0.241 1.241 8 H -0.278 1.278 9 H -0.296 1.296 10 N -0.505 5.505 11 C 0.181 3.819 12 N -0.411 5.411 13 C 0.016 3.984 14 C -0.093 4.093 15 C 0.085 3.915 16 O -0.635 6.635 17 Si 1.320 2.680 18 C -0.520 4.520 19 C -0.518 4.518 20 C -0.385 4.385 21 C -0.137 4.137 22 C -0.141 4.141 23 C -0.137 4.137 24 C 0.002 3.998 25 S 0.126 5.874 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.098 0.902 29 H 0.107 0.893 30 H 0.404 0.596 31 H 0.094 0.906 32 H 0.085 0.915 33 H 0.124 0.876 34 H 0.070 0.930 35 H 0.085 0.915 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.059 0.941 43 H 0.045 0.955 44 H 0.056 0.944 45 H 0.064 0.936 46 H 0.048 0.952 47 H 0.062 0.938 48 H 0.057 0.943 49 H 0.045 0.955 50 H 0.061 0.939 51 H 0.095 0.905 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.626 -3.207 2.489 5.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.319 4.319 3 C -0.084 4.084 4 C -0.146 4.146 5 O -0.359 6.359 6 Si 0.822 3.178 7 H -0.164 1.164 8 H -0.203 1.203 9 H -0.222 1.222 10 N -0.224 5.224 11 C -0.188 4.188 12 N -0.133 5.133 13 C -0.112 4.112 14 C -0.113 4.113 15 C 0.009 3.991 16 O -0.594 6.594 17 Si 1.450 2.550 18 C -0.621 4.621 19 C -0.620 4.620 20 C -0.427 4.427 21 C -0.194 4.194 22 C -0.198 4.198 23 C -0.194 4.194 24 C -0.127 4.127 25 S 0.379 5.621 26 H 0.097 0.903 27 H 0.091 0.909 28 H 0.116 0.884 29 H 0.124 0.876 30 H 0.256 0.744 31 H 0.112 0.888 32 H 0.104 0.896 33 H 0.142 0.858 34 H 0.088 0.912 35 H 0.103 0.897 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.086 0.914 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.078 0.922 43 H 0.064 0.936 44 H 0.075 0.925 45 H 0.083 0.917 46 H 0.067 0.933 47 H 0.081 0.919 48 H 0.076 0.924 49 H 0.064 0.936 50 H 0.080 0.920 51 H 0.113 0.887 52 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.190 -3.307 1.347 4.189 hybrid contribution -0.718 0.632 0.958 1.354 sum -2.908 -2.675 2.305 4.575 Atomic orbital electron populations 1.20293 0.84508 1.03805 1.03533 1.25926 1.03075 0.93491 1.09444 1.19520 0.86523 0.97078 1.05310 1.23751 0.93025 0.95483 1.02355 1.86422 1.33065 1.37617 1.78786 0.84993 0.77851 0.77147 0.77777 1.16394 1.20302 1.22207 1.65902 1.17798 1.19283 1.19463 1.26089 0.96231 0.92090 1.04372 1.65756 1.09120 1.13388 1.25042 1.24146 0.99233 1.00047 0.87756 1.22738 0.99746 0.93516 0.95255 1.22178 0.86335 0.99144 0.91400 1.85350 1.45296 1.74142 1.54623 0.76111 0.63701 0.58011 0.57214 1.27133 1.17444 1.05048 1.12524 1.27093 1.04799 1.22602 1.07474 1.25972 1.14447 0.98038 1.04257 1.21541 1.01674 0.95445 1.00772 1.21603 1.02090 0.98625 0.97496 1.21541 0.97070 1.01802 0.98994 1.24296 0.99558 0.85668 1.03132 1.83776 0.97848 1.10806 1.69709 0.90326 0.90876 0.88365 0.87574 0.74378 0.88768 0.89638 0.85822 0.91151 0.89661 0.90867 0.90502 0.91359 0.91042 0.90552 0.90670 0.92200 0.93565 0.92473 0.91728 0.93335 0.91887 0.92398 0.93602 0.91999 0.88697 0.86131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 0.02 8.96 71.24 0.64 0.66 16 2 C -0.20 -0.92 6.50 24.58 0.16 -0.76 16 3 C 0.05 0.35 5.95 41.40 0.25 0.59 16 4 C -0.03 -0.06 2.81 71.24 0.20 0.14 16 5 O -0.55 0.95 9.88 -148.98 -1.47 -0.52 16 6 Si 1.00 5.22 27.37 68.60 1.88 7.10 16 7 H -0.24 -0.32 7.11 99.48 0.71 0.39 16 8 H -0.28 -3.00 7.11 99.48 0.71 -2.29 16 9 H -0.30 -3.49 7.11 99.48 0.71 -2.78 16 10 N -0.51 -5.66 8.95 -189.86 -1.70 -7.36 16 11 C 0.18 1.33 6.59 179.32 1.18 2.51 16 12 N -0.41 -1.93 6.52 -739.26 -4.82 -6.75 16 13 C 0.02 0.02 7.24 83.54 0.60 0.62 16 14 C -0.09 0.31 4.34 -10.46 -0.05 0.26 16 15 C 0.09 -0.46 5.03 71.98 0.36 -0.10 16 16 O -0.63 1.46 8.56 -148.98 -1.28 0.18 16 17 Si 1.32 -5.64 8.45 68.60 0.58 -5.06 16 18 C -0.52 1.84 8.50 113.37 0.96 2.80 16 19 C -0.52 2.17 8.50 113.37 0.96 3.13 16 20 C -0.39 0.51 0.53 -10.80 -0.01 0.51 16 21 C -0.14 -0.02 7.85 71.98 0.56 0.55 16 22 C -0.14 0.26 7.85 71.98 0.56 0.83 16 23 C -0.14 0.04 7.84 71.98 0.56 0.60 16 24 C 0.00 -0.01 6.89 83.53 0.58 0.57 16 25 S 0.13 0.30 20.68 -56.49 -1.17 -0.87 16 26 H 0.08 0.01 8.14 -2.39 -0.02 -0.01 16 27 H 0.07 -0.21 8.14 -2.39 -0.02 -0.23 16 28 H 0.10 -0.15 6.63 -2.38 -0.02 -0.17 16 29 H 0.11 -0.31 7.96 -2.39 -0.02 -0.33 16 30 H 0.40 -4.55 8.74 -74.05 -0.65 -5.19 16 31 H 0.09 0.25 8.14 -2.39 -0.02 0.23 16 32 H 0.09 -0.03 7.62 -2.38 -0.02 -0.05 16 33 H 0.12 -0.34 8.14 -2.39 -0.02 -0.36 16 34 H 0.07 -0.55 6.88 -2.38 -0.02 -0.57 16 35 H 0.09 -0.79 7.22 -2.39 -0.02 -0.81 16 36 H 0.07 -0.36 7.48 -2.39 -0.02 -0.37 16 37 H 0.08 -0.29 7.79 -2.39 -0.02 -0.31 16 38 H 0.07 -0.16 7.79 -2.39 -0.02 -0.18 16 39 H 0.07 -0.24 7.79 -2.39 -0.02 -0.26 16 40 H 0.08 -0.33 7.79 -2.39 -0.02 -0.35 16 41 H 0.07 -0.43 7.48 -2.39 -0.02 -0.45 16 42 H 0.06 -0.07 7.80 -2.39 -0.02 -0.09 16 43 H 0.05 0.06 8.14 -2.38 -0.02 0.04 16 44 H 0.06 0.04 7.96 -2.39 -0.02 0.02 16 45 H 0.06 -0.23 7.79 -2.39 -0.02 -0.25 16 46 H 0.05 -0.01 8.14 -2.39 -0.02 -0.03 16 47 H 0.06 -0.21 7.80 -2.39 -0.02 -0.23 16 48 H 0.06 0.01 7.97 -2.39 -0.02 -0.01 16 49 H 0.04 0.05 8.14 -2.39 -0.02 0.03 16 50 H 0.06 -0.12 7.79 -2.39 -0.02 -0.14 16 51 H 0.10 -0.52 6.06 -3.94 -0.02 -0.54 16 52 H 0.12 -0.60 8.14 -2.39 -0.02 -0.62 16 Total: 0.00 -16.84 416.57 0.55 -16.29 By element: Atomic # 1 Polarization: -16.90 SS G_CDS: 0.98 Total: -15.91 kcal Atomic # 6 Polarization: 5.37 SS G_CDS: 7.54 Total: 12.91 kcal Atomic # 7 Polarization: -7.59 SS G_CDS: -6.52 Total: -14.11 kcal Atomic # 8 Polarization: 2.41 SS G_CDS: -2.75 Total: -0.34 kcal Atomic # 14 Polarization: -0.42 SS G_CDS: 2.46 Total: 2.04 kcal Atomic # 16 Polarization: 0.30 SS G_CDS: -1.17 Total: -0.87 kcal Total: -16.84 0.55 -16.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14186586_15704122.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.551 kcal (2) G-P(sol) polarization free energy of solvation -16.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds