Wall clock time and date at job start Mon Mar 8 2021 05:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53012 * 109.47159 * 2 1 4 4 C 1.52999 * 109.47242 * 240.00626 * 2 1 3 5 5 Si 1.86290 * 109.47514 * 120.00179 * 2 1 3 6 6 C 1.86300 * 109.47155 * 300.00200 * 5 2 1 7 7 C 1.86297 * 109.47552 * 180.02562 * 5 2 1 8 8 O 1.63102 * 109.47136 * 59.99998 * 5 2 1 9 9 C 1.42903 * 114.00027 * 180.02562 * 8 5 2 10 10 C 1.53010 * 109.46765 * 180.02562 * 9 8 5 11 11 C 1.53935 * 113.72848 * 184.99870 * 10 9 8 12 12 N 1.47962 * 86.30001 * 221.86345 * 11 10 9 13 13 C 1.39145 * 111.00156 * 137.63642 * 12 11 10 14 14 C 1.39302 * 119.72229 * 180.02562 * 13 12 11 15 15 F 1.35100 * 120.46651 * 0.02562 * 14 13 12 16 16 C 1.38482 * 119.05869 * 179.97438 * 14 13 12 17 17 C 1.38851 * 118.48749 * 0.02562 * 16 14 13 18 18 C 1.50702 * 120.32837 * 180.02562 * 17 16 14 19 19 O 1.42897 * 109.47058 * 299.99939 * 18 17 16 20 20 Si 1.86304 * 109.47297 * 179.97438 * 18 17 16 21 21 H 1.48505 * 109.46756 * 60.00164 * 20 18 17 22 22 H 1.48505 * 109.46914 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47226 * 300.00089 * 20 18 17 24 24 C 1.38028 * 119.34747 * 0.02562 * 17 16 14 25 25 N 1.31979 * 120.89623 * 359.74168 * 24 17 16 26 26 C 1.48308 * 90.62534 * 24.68684 * 12 11 10 27 27 H 1.09004 * 109.47066 * 299.99953 * 1 2 3 28 28 H 1.09000 * 109.47431 * 59.99869 * 1 2 3 29 29 H 1.08999 * 109.47164 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.46760 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.47056 * 300.00361 * 3 2 1 32 32 H 1.08999 * 109.46730 * 60.00373 * 3 2 1 33 33 H 1.08999 * 109.46586 * 299.99796 * 4 2 1 34 34 H 1.09000 * 109.47311 * 59.99432 * 4 2 1 35 35 H 1.08998 * 109.47908 * 180.02562 * 4 2 1 36 36 H 1.09000 * 109.47236 * 179.97438 * 6 5 2 37 37 H 1.09002 * 109.47401 * 299.99210 * 6 5 2 38 38 H 1.08995 * 109.47532 * 59.99977 * 6 5 2 39 39 H 1.09004 * 109.47042 * 299.99876 * 7 5 2 40 40 H 1.08999 * 109.47150 * 59.99876 * 7 5 2 41 41 H 1.09000 * 109.47468 * 179.97438 * 7 5 2 42 42 H 1.08998 * 109.47200 * 60.00163 * 9 8 5 43 43 H 1.09002 * 109.46860 * 299.99451 * 9 8 5 44 44 H 1.09000 * 113.00869 * 316.63125 * 10 9 8 45 45 H 1.09002 * 113.76229 * 336.23742 * 11 10 9 46 46 H 1.09005 * 113.75703 * 107.49267 * 11 10 9 47 47 H 1.08004 * 120.75392 * 180.02562 * 16 14 13 48 48 H 1.09004 * 109.47264 * 60.00057 * 18 17 16 49 49 H 0.96700 * 114.00102 * 299.99688 * 19 18 17 50 50 H 1.07999 * 119.55267 * 180.02562 * 24 17 16 51 51 H 1.09003 * 113.75437 * 220.98675 * 26 12 11 52 52 H 1.08998 * 113.85723 * 89.64375 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 -1.2493 5 14 2.1510 -0.8782 1.5210 6 6 1.5301 -0.0001 3.0422 7 6 4.0140 -0.8775 1.5214 8 8 1.6074 -2.4160 1.5210 9 6 2.0287 -3.1814 2.6518 10 6 1.4639 -4.5996 2.5467 11 6 1.7570 -5.4759 3.7779 12 7 2.0433 -6.5633 2.8162 13 6 3.1752 -7.2787 3.1949 14 6 3.6102 -8.3471 2.4140 15 9 2.9414 -8.6926 1.2922 16 6 4.7386 -9.0492 2.8034 17 6 5.3943 -8.6584 3.9632 18 6 6.6265 -9.3929 4.4250 19 8 6.3027 -10.7643 4.6621 20 14 7.2557 -8.6215 5.9998 21 1 6.2062 -8.7080 7.0470 22 1 8.4703 -9.3449 6.4545 23 1 7.5923 -7.1964 5.7529 24 6 4.9065 -7.5905 4.6890 25 7 3.8313 -6.9360 4.2923 26 6 2.3669 -5.5696 1.7639 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 3.1299 1.4425 -0.0005 31 1 1.6766 1.9565 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 1.6766 -1.7487 -1.2493 34 1 1.6766 -0.2073 -2.1393 35 1 3.1300 -0.7216 -1.2492 36 1 1.8931 -0.5142 3.9321 37 1 1.8934 1.0276 3.0423 38 1 0.4401 -0.0001 3.0423 39 1 4.3777 -1.3911 0.6314 40 1 4.3770 0.1502 1.5216 41 1 4.3774 -1.3910 2.4116 42 1 1.6639 -2.7113 3.5650 43 1 3.1176 -3.2253 2.6756 44 1 0.4206 -4.6204 2.2318 45 1 2.6279 -5.1539 4.3488 46 1 0.8835 -5.6612 4.4031 47 1 5.1002 -9.8818 2.2182 48 1 7.3970 -9.3290 3.6566 49 1 5.6221 -10.8969 5.3362 50 1 5.4142 -7.2834 5.5914 51 1 1.9805 -5.8315 0.7789 52 1 3.4159 -5.2741 1.7442 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_14186586_17656566.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:29:00 Heat of formation + Delta-G solvation = -93.599862 kcal Electronic energy + Delta-G solvation = -30302.614463 eV Core-core repulsion = 26148.427532 eV Total energy + Delta-G solvation = -4154.186931 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 356.184 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -49.90019 -42.31012 -40.50302 -38.11714 -37.55809 -36.85729 -33.89504 -32.90977 -30.55880 -29.45168 -29.12432 -27.88989 -27.47559 -27.40128 -27.23796 -25.43560 -24.41581 -22.71673 -20.80235 -20.44886 -19.22271 -18.61927 -18.35143 -17.82025 -17.70891 -17.12880 -16.79733 -16.39595 -16.25145 -16.00539 -15.89495 -15.82600 -15.02986 -14.90015 -14.86931 -14.81617 -14.70690 -14.37299 -14.16392 -13.98890 -13.69922 -13.65635 -13.46035 -13.43015 -13.27430 -12.96623 -12.95630 -12.85141 -12.70601 -12.46615 -12.37302 -12.29431 -12.14767 -12.08377 -11.74699 -11.71959 -11.44882 -11.37595 -11.18762 -10.87996 -10.63415 -10.59454 -10.38932 -10.09785 -9.47376 -0.39027 -0.13444 0.94222 1.28642 1.34051 1.39505 1.71544 1.76247 2.01646 2.17568 2.36796 2.44526 2.94799 3.02303 3.25828 3.36249 3.39411 3.55982 3.64107 3.82740 4.06243 4.09680 4.10352 4.19070 4.25849 4.28613 4.31082 4.39377 4.45020 4.51757 4.57380 4.63046 4.64731 4.66990 4.68923 4.69733 4.70463 4.77259 4.78699 4.83427 4.93260 4.97675 5.07328 5.08425 5.08606 5.17860 5.30035 5.31644 5.39243 5.40460 5.48802 5.51807 5.56402 5.91297 6.34700 6.53028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.375 4.375 3 C -0.137 4.137 4 C -0.134 4.134 5 Si 1.287 2.713 6 C -0.511 4.511 7 C -0.512 4.512 8 O -0.622 6.622 9 C 0.094 3.906 10 C -0.114 4.114 11 C 0.019 3.981 12 N -0.433 5.433 13 C 0.253 3.747 14 C 0.059 3.941 15 F -0.118 7.118 16 C -0.067 4.067 17 C -0.162 4.162 18 C -0.075 4.075 19 O -0.535 6.535 20 Si 0.944 3.056 21 H -0.246 1.246 22 H -0.246 1.246 23 H -0.246 1.246 24 C 0.106 3.894 25 N -0.482 5.482 26 C 0.023 3.977 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.060 0.940 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.066 0.934 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.056 0.944 44 H 0.117 0.883 45 H 0.104 0.896 46 H 0.099 0.901 47 H 0.157 0.843 48 H 0.124 0.876 49 H 0.379 0.621 50 H 0.160 0.840 51 H 0.104 0.896 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.077 1.549 1.998 3.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.418 4.418 3 C -0.194 4.194 4 C -0.191 4.191 5 Si 1.418 2.582 6 C -0.613 4.613 7 C -0.613 4.613 8 O -0.581 6.581 9 C 0.018 3.982 10 C -0.133 4.133 11 C -0.109 4.109 12 N -0.152 5.152 13 C 0.021 3.979 14 C 0.035 3.965 15 F -0.096 7.096 16 C -0.093 4.093 17 C -0.165 4.165 18 C -0.186 4.186 19 O -0.340 6.340 20 Si 0.765 3.235 21 H -0.170 1.170 22 H -0.170 1.170 23 H -0.169 1.169 24 C -0.052 4.052 25 N -0.194 5.194 26 C -0.103 4.103 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.084 0.916 42 H 0.081 0.919 43 H 0.074 0.926 44 H 0.135 0.865 45 H 0.122 0.878 46 H 0.117 0.883 47 H 0.174 0.826 48 H 0.142 0.858 49 H 0.226 0.774 50 H 0.176 0.824 51 H 0.122 0.878 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.845 1.832 2.463 3.581 hybrid contribution 0.418 0.002 -0.444 0.610 sum 2.262 1.834 2.019 3.544 Atomic orbital electron populations 1.21509 0.93772 1.02047 1.01776 1.25782 1.00718 1.02599 1.12713 1.21558 1.00743 0.94950 1.02149 1.21509 1.00546 1.00280 0.96770 0.76716 0.62944 0.53589 0.64988 1.27036 1.07057 1.09463 1.17760 1.27047 1.25214 1.04720 1.04360 1.85370 1.79203 1.45945 1.47588 1.22030 0.97744 0.91171 0.87243 1.23132 1.01965 0.92223 0.95966 1.24031 1.03429 0.88285 0.95136 1.66336 1.23283 1.17147 1.08390 1.20631 0.91820 0.94131 0.91316 1.18190 0.94334 0.97159 0.86782 1.91559 1.79081 1.91083 1.47896 1.21489 0.92712 0.99047 0.96100 1.21201 0.99991 0.98930 0.96423 1.24928 0.96481 0.86337 1.10862 1.86543 1.62214 1.22076 1.63186 0.85756 0.81577 0.80021 0.76115 1.16951 1.16981 1.16944 1.22508 0.91994 0.91912 0.98736 1.67668 1.07857 1.29012 1.14820 1.24185 0.99755 0.89316 0.96998 0.92711 0.92818 0.92103 0.92559 0.92502 0.92521 0.92120 0.92801 0.92771 0.91481 0.90753 0.90817 0.90926 0.90719 0.91576 0.91888 0.92569 0.86455 0.87772 0.88300 0.82567 0.85804 0.77383 0.82357 0.87793 0.90390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.01 7.85 37.16 0.29 0.30 16 2 C -0.37 0.17 0.53 -90.62 -0.05 0.13 16 3 C -0.14 0.10 7.85 37.16 0.29 0.39 16 4 C -0.13 0.01 7.85 37.16 0.29 0.30 16 5 Si 1.29 -1.71 8.45 -169.99 -1.44 -3.14 16 6 C -0.51 0.49 8.50 101.05 0.86 1.35 16 7 C -0.51 0.45 8.50 101.05 0.86 1.31 16 8 O -0.62 0.15 8.56 -35.23 -0.30 -0.15 16 9 C 0.09 -0.12 4.98 37.16 0.19 0.07 16 10 C -0.11 0.08 4.19 -89.68 -0.38 -0.30 16 11 C 0.02 0.00 7.21 -2.77 -0.02 -0.02 16 12 N -0.43 -0.77 6.10 -175.57 -1.07 -1.84 16 13 C 0.25 0.56 5.91 -154.84 -0.92 -0.36 16 14 C 0.06 0.12 7.28 -39.10 -0.28 -0.16 16 15 F -0.12 -0.39 17.10 2.25 0.04 -0.35 16 16 C -0.07 -0.01 9.75 -39.26 -0.38 -0.40 16 17 C -0.16 0.13 5.40 -104.47 -0.56 -0.44 16 18 C -0.07 0.17 2.83 36.01 0.10 0.27 16 19 O -0.54 0.69 12.78 -35.23 -0.45 0.24 16 20 Si 0.94 -2.26 25.10 -169.99 -4.27 -6.53 16 21 H -0.25 0.54 7.11 56.52 0.40 0.94 16 22 H -0.25 0.19 7.11 56.52 0.40 0.59 16 23 H -0.25 0.50 7.11 56.52 0.40 0.90 16 24 C 0.11 -0.01 9.84 -17.57 -0.17 -0.19 16 25 N -0.48 -0.76 8.21 -12.36 -0.10 -0.87 16 26 C 0.02 0.01 7.45 -2.58 -0.02 -0.01 16 27 H 0.05 -0.04 7.79 -51.93 -0.40 -0.44 16 28 H 0.05 0.01 8.14 -51.93 -0.42 -0.41 16 29 H 0.06 0.01 7.97 -51.93 -0.41 -0.41 16 30 H 0.06 -0.07 7.79 -51.93 -0.40 -0.48 16 31 H 0.06 -0.02 8.14 -51.93 -0.42 -0.44 16 32 H 0.06 -0.07 7.79 -51.93 -0.40 -0.48 16 33 H 0.06 0.01 7.96 -51.93 -0.41 -0.41 16 34 H 0.05 0.01 8.14 -51.93 -0.42 -0.41 16 35 H 0.05 -0.03 7.79 -51.93 -0.40 -0.44 16 36 H 0.07 -0.09 7.48 -51.93 -0.39 -0.47 16 37 H 0.07 -0.08 7.79 -51.93 -0.40 -0.49 16 38 H 0.07 -0.05 7.79 -51.93 -0.40 -0.46 16 39 H 0.07 -0.04 7.79 -51.93 -0.40 -0.45 16 40 H 0.07 -0.08 7.79 -51.93 -0.40 -0.48 16 41 H 0.07 -0.07 7.48 -51.93 -0.39 -0.46 16 42 H 0.06 -0.16 7.21 -51.93 -0.37 -0.53 16 43 H 0.06 -0.11 6.91 -51.93 -0.36 -0.47 16 44 H 0.12 -0.06 8.14 -51.93 -0.42 -0.48 16 45 H 0.10 -0.02 6.63 -51.93 -0.34 -0.37 16 46 H 0.10 -0.06 8.14 -51.93 -0.42 -0.48 16 47 H 0.16 -0.16 8.06 -52.48 -0.42 -0.58 16 48 H 0.12 -0.39 7.96 -51.93 -0.41 -0.81 16 49 H 0.38 -1.64 8.70 45.56 0.40 -1.24 16 50 H 0.16 -0.32 4.88 -52.49 -0.26 -0.58 16 51 H 0.10 0.03 8.14 -51.93 -0.42 -0.40 16 52 H 0.08 -0.01 7.67 -51.93 -0.40 -0.40 16 LS Contribution 413.61 15.07 6.23 6.23 Total: 0.00 -5.19 413.61 -9.61 -14.80 By element: Atomic # 1 Polarization: -2.29 SS G_CDS: -8.34 Total: -10.63 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: 0.10 Total: 2.24 kcal Atomic # 7 Polarization: -1.53 SS G_CDS: -1.17 Total: -2.70 kcal Atomic # 8 Polarization: 0.83 SS G_CDS: -0.75 Total: 0.08 kcal Atomic # 9 Polarization: -0.39 SS G_CDS: 0.04 Total: -0.35 kcal Atomic # 14 Polarization: -3.97 SS G_CDS: -5.70 Total: -9.67 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -5.19 -9.61 -14.80 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14186586_17656566.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.805 kcal (2) G-P(sol) polarization free energy of solvation -5.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds