Wall clock time and date at job start Mon Mar 8 2021 05:28:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53012 * 109.47159 * 2 1 4 4 C 1.52999 * 109.47242 * 240.00626 * 2 1 3 5 5 Si 1.86290 * 109.47514 * 120.00179 * 2 1 3 6 6 C 1.86300 * 109.47155 * 300.00200 * 5 2 1 7 7 C 1.86297 * 109.47552 * 180.02562 * 5 2 1 8 8 O 1.63102 * 109.47136 * 59.99998 * 5 2 1 9 9 C 1.42903 * 114.00027 * 180.02562 * 8 5 2 10 10 C 1.53010 * 109.46765 * 180.02562 * 9 8 5 11 11 C 1.53935 * 113.72848 * 184.99870 * 10 9 8 12 12 N 1.47962 * 86.30001 * 221.86345 * 11 10 9 13 13 C 1.39145 * 111.00156 * 137.63642 * 12 11 10 14 14 C 1.39302 * 119.72229 * 180.02562 * 13 12 11 15 15 F 1.35100 * 120.46651 * 0.02562 * 14 13 12 16 16 C 1.38482 * 119.05869 * 179.97438 * 14 13 12 17 17 C 1.38851 * 118.48749 * 0.02562 * 16 14 13 18 18 C 1.50702 * 120.32837 * 180.02562 * 17 16 14 19 19 O 1.42897 * 109.47058 * 299.99939 * 18 17 16 20 20 Si 1.86304 * 109.47297 * 179.97438 * 18 17 16 21 21 H 1.48505 * 109.46756 * 60.00164 * 20 18 17 22 22 H 1.48505 * 109.46914 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47226 * 300.00089 * 20 18 17 24 24 C 1.38028 * 119.34747 * 0.02562 * 17 16 14 25 25 N 1.31979 * 120.89623 * 359.74168 * 24 17 16 26 26 C 1.48308 * 90.62534 * 24.68684 * 12 11 10 27 27 H 1.09004 * 109.47066 * 299.99953 * 1 2 3 28 28 H 1.09000 * 109.47431 * 59.99869 * 1 2 3 29 29 H 1.08999 * 109.47164 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.46760 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.47056 * 300.00361 * 3 2 1 32 32 H 1.08999 * 109.46730 * 60.00373 * 3 2 1 33 33 H 1.08999 * 109.46586 * 299.99796 * 4 2 1 34 34 H 1.09000 * 109.47311 * 59.99432 * 4 2 1 35 35 H 1.08998 * 109.47908 * 180.02562 * 4 2 1 36 36 H 1.09000 * 109.47236 * 179.97438 * 6 5 2 37 37 H 1.09002 * 109.47401 * 299.99210 * 6 5 2 38 38 H 1.08995 * 109.47532 * 59.99977 * 6 5 2 39 39 H 1.09004 * 109.47042 * 299.99876 * 7 5 2 40 40 H 1.08999 * 109.47150 * 59.99876 * 7 5 2 41 41 H 1.09000 * 109.47468 * 179.97438 * 7 5 2 42 42 H 1.08998 * 109.47200 * 60.00163 * 9 8 5 43 43 H 1.09002 * 109.46860 * 299.99451 * 9 8 5 44 44 H 1.09000 * 113.00869 * 316.63125 * 10 9 8 45 45 H 1.09002 * 113.76229 * 336.23742 * 11 10 9 46 46 H 1.09005 * 113.75703 * 107.49267 * 11 10 9 47 47 H 1.08004 * 120.75392 * 180.02562 * 16 14 13 48 48 H 1.09004 * 109.47264 * 60.00057 * 18 17 16 49 49 H 0.96700 * 114.00102 * 299.99688 * 19 18 17 50 50 H 1.07999 * 119.55267 * 180.02562 * 24 17 16 51 51 H 1.09003 * 113.75437 * 220.98675 * 26 12 11 52 52 H 1.08998 * 113.85723 * 89.64375 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 -1.2493 5 14 2.1510 -0.8782 1.5210 6 6 1.5301 -0.0001 3.0422 7 6 4.0140 -0.8775 1.5214 8 8 1.6074 -2.4160 1.5210 9 6 2.0287 -3.1814 2.6518 10 6 1.4639 -4.5996 2.5467 11 6 1.7570 -5.4759 3.7779 12 7 2.0433 -6.5633 2.8162 13 6 3.1752 -7.2787 3.1949 14 6 3.6102 -8.3471 2.4140 15 9 2.9414 -8.6926 1.2922 16 6 4.7386 -9.0492 2.8034 17 6 5.3943 -8.6584 3.9632 18 6 6.6265 -9.3929 4.4250 19 8 6.3027 -10.7643 4.6621 20 14 7.2557 -8.6215 5.9998 21 1 6.2062 -8.7080 7.0470 22 1 8.4703 -9.3449 6.4545 23 1 7.5923 -7.1964 5.7529 24 6 4.9065 -7.5905 4.6890 25 7 3.8313 -6.9360 4.2923 26 6 2.3669 -5.5696 1.7639 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 3.1299 1.4425 -0.0005 31 1 1.6766 1.9565 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 1.6766 -1.7487 -1.2493 34 1 1.6766 -0.2073 -2.1393 35 1 3.1300 -0.7216 -1.2492 36 1 1.8931 -0.5142 3.9321 37 1 1.8934 1.0276 3.0423 38 1 0.4401 -0.0001 3.0423 39 1 4.3777 -1.3911 0.6314 40 1 4.3770 0.1502 1.5216 41 1 4.3774 -1.3910 2.4116 42 1 1.6639 -2.7113 3.5650 43 1 3.1176 -3.2253 2.6756 44 1 0.4206 -4.6204 2.2318 45 1 2.6279 -5.1539 4.3488 46 1 0.8835 -5.6612 4.4031 47 1 5.1002 -9.8818 2.2182 48 1 7.3970 -9.3290 3.6566 49 1 5.6221 -10.8969 5.3362 50 1 5.4142 -7.2834 5.5914 51 1 1.9805 -5.8315 0.7789 52 1 3.4159 -5.2741 1.7442 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14186586_17656566.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:28:59 Heat of formation + Delta-G solvation = -86.903842 kcal Electronic energy + Delta-G solvation = -30302.324102 eV Core-core repulsion = 26148.427532 eV Total energy + Delta-G solvation = -4153.896570 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 356.184 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -50.04967 -42.32280 -40.48154 -38.01273 -37.47483 -36.81441 -33.87373 -32.93010 -30.52017 -29.35855 -29.05393 -27.83361 -27.45914 -27.36151 -27.17006 -25.38854 -24.40934 -22.70703 -20.77060 -20.40817 -19.20550 -18.63956 -18.36200 -17.75329 -17.66827 -17.18660 -16.75252 -16.33901 -16.12615 -16.00599 -15.83870 -15.78811 -15.03030 -14.84146 -14.80881 -14.78492 -14.67124 -14.39401 -14.16181 -13.92358 -13.67480 -13.58685 -13.39757 -13.36795 -13.17464 -12.94476 -12.92090 -12.72901 -12.62762 -12.42042 -12.31461 -12.12844 -12.07540 -12.01810 -11.70103 -11.67942 -11.37121 -11.32563 -11.15446 -10.90594 -10.61864 -10.48849 -10.29637 -10.04366 -9.50380 -0.41356 -0.15834 1.12632 1.48516 1.51447 1.51988 1.80803 1.93481 2.13602 2.17127 2.38929 2.49739 2.94580 3.03102 3.34593 3.40626 3.55550 3.58584 3.68477 3.85988 4.09311 4.13699 4.13845 4.24433 4.34036 4.35203 4.39587 4.47640 4.50749 4.59759 4.63396 4.67074 4.72048 4.74210 4.75338 4.78633 4.80133 4.80928 4.83162 4.84381 4.94817 5.01252 5.10385 5.10707 5.13065 5.22500 5.30513 5.35758 5.42190 5.45671 5.55811 5.60741 5.65239 5.88583 6.49546 6.65210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.383 4.383 3 C -0.141 4.141 4 C -0.137 4.137 5 Si 1.317 2.683 6 C -0.518 4.518 7 C -0.519 4.519 8 O -0.635 6.635 9 C 0.088 3.912 10 C -0.105 4.105 11 C 0.022 3.978 12 N -0.451 5.451 13 C 0.242 3.758 14 C 0.037 3.963 15 F -0.131 7.131 16 C -0.064 4.064 17 C -0.154 4.154 18 C -0.072 4.072 19 O -0.549 6.549 20 Si 0.976 3.024 21 H -0.246 1.246 22 H -0.270 1.270 23 H -0.248 1.248 24 C 0.104 3.896 25 N -0.492 5.492 26 C 0.022 3.978 27 H 0.060 0.940 28 H 0.046 0.954 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.049 0.951 32 H 0.063 0.937 33 H 0.056 0.944 34 H 0.047 0.953 35 H 0.059 0.941 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.077 0.923 41 H 0.069 0.931 42 H 0.079 0.921 43 H 0.065 0.935 44 H 0.114 0.886 45 H 0.107 0.893 46 H 0.102 0.898 47 H 0.167 0.833 48 H 0.135 0.865 49 H 0.391 0.609 50 H 0.178 0.822 51 H 0.098 0.902 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.811 1.782 2.993 4.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.425 4.425 3 C -0.198 4.198 4 C -0.194 4.194 5 Si 1.447 2.553 6 C -0.619 4.619 7 C -0.620 4.620 8 O -0.595 6.595 9 C 0.012 3.988 10 C -0.124 4.124 11 C -0.105 4.105 12 N -0.171 5.171 13 C 0.010 3.990 14 C 0.013 3.987 15 F -0.110 7.110 16 C -0.090 4.090 17 C -0.157 4.157 18 C -0.183 4.183 19 O -0.357 6.357 20 Si 0.799 3.201 21 H -0.170 1.170 22 H -0.195 1.195 23 H -0.171 1.171 24 C -0.054 4.054 25 N -0.204 5.204 26 C -0.104 4.104 27 H 0.079 0.921 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.096 0.904 41 H 0.089 0.911 42 H 0.097 0.903 43 H 0.083 0.917 44 H 0.132 0.868 45 H 0.125 0.875 46 H 0.120 0.880 47 H 0.185 0.815 48 H 0.153 0.847 49 H 0.240 0.760 50 H 0.194 0.806 51 H 0.117 0.883 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.558 2.074 3.449 4.768 hybrid contribution 0.220 -0.111 -0.738 0.778 sum 2.778 1.962 2.710 4.349 Atomic orbital electron populations 1.21538 0.94238 1.01812 1.01797 1.25933 1.00421 1.02981 1.13211 1.21605 1.01230 0.94770 1.02197 1.21538 1.00930 1.00055 0.96870 0.76169 0.62311 0.52854 0.64012 1.27095 1.06941 1.09783 1.18130 1.27122 1.25572 1.04935 1.04390 1.85358 1.79491 1.46508 1.48115 1.22169 0.98359 0.90720 0.87570 1.23042 1.01531 0.92506 0.95308 1.24045 1.03577 0.87802 0.95120 1.66343 1.23537 1.17893 1.09288 1.20734 0.92184 0.94394 0.91666 1.18427 0.95287 0.98058 0.86924 1.91517 1.79531 1.91290 1.48624 1.21659 0.92040 0.98953 0.96396 1.21339 1.00105 0.98552 0.95710 1.25018 0.95883 0.85902 1.11484 1.86518 1.62831 1.22422 1.63880 0.85297 0.80191 0.79212 0.75409 1.16997 1.19460 1.17136 1.22885 0.91534 0.91786 0.99204 1.67691 1.08474 1.29539 1.14724 1.24205 1.00090 0.89395 0.96675 0.92061 0.93456 0.92458 0.91884 0.93205 0.91778 0.92497 0.93425 0.92209 0.90919 0.90486 0.91076 0.91315 0.90436 0.91150 0.90343 0.91690 0.86827 0.87531 0.88009 0.81540 0.84707 0.75974 0.80568 0.88345 0.90162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.05 7.85 71.98 0.56 0.52 16 2 C -0.38 0.25 0.53 -10.79 -0.01 0.25 16 3 C -0.14 0.19 7.85 71.99 0.56 0.76 16 4 C -0.14 -0.07 7.85 71.98 0.56 0.49 16 5 Si 1.32 -3.89 8.45 68.60 0.58 -3.31 16 6 C -0.52 1.38 8.50 113.37 0.96 2.35 16 7 C -0.52 1.18 8.50 113.37 0.96 2.15 16 8 O -0.64 0.36 8.56 -148.98 -1.28 -0.92 16 9 C 0.09 -0.25 4.98 71.99 0.36 0.11 16 10 C -0.10 0.10 4.19 -10.15 -0.04 0.06 16 11 C 0.02 0.00 7.21 86.41 0.62 0.63 16 12 N -0.45 -2.00 6.10 -709.37 -4.33 -6.33 16 13 C 0.24 1.23 5.91 133.06 0.79 2.02 16 14 C 0.04 0.18 7.28 22.58 0.16 0.35 16 15 F -0.13 -1.05 17.10 44.97 0.77 -0.29 16 16 C -0.06 -0.03 9.75 22.47 0.22 0.19 16 17 C -0.15 0.33 5.40 -19.77 -0.11 0.23 16 18 C -0.07 0.39 2.83 71.24 0.20 0.59 16 19 O -0.55 1.87 12.78 -148.98 -1.90 -0.03 16 20 Si 0.98 -5.56 25.10 68.60 1.72 -3.84 16 21 H -0.25 1.39 7.11 99.48 0.71 2.09 16 22 H -0.27 0.45 7.11 99.48 0.71 1.16 16 23 H -0.25 1.32 7.11 99.48 0.71 2.02 16 24 C 0.10 -0.09 9.84 84.62 0.83 0.74 16 25 N -0.49 -1.54 8.21 -193.03 -1.58 -3.13 16 26 C 0.02 0.03 7.45 86.34 0.64 0.68 16 27 H 0.06 -0.07 7.79 -2.38 -0.02 -0.09 16 28 H 0.05 0.07 8.14 -2.39 -0.02 0.05 16 29 H 0.06 0.05 7.97 -2.39 -0.02 0.03 16 30 H 0.06 -0.18 7.79 -2.39 -0.02 -0.20 16 31 H 0.05 0.00 8.14 -2.39 -0.02 -0.02 16 32 H 0.06 -0.19 7.79 -2.39 -0.02 -0.21 16 33 H 0.06 0.06 7.96 -2.39 -0.02 0.05 16 34 H 0.05 0.07 8.14 -2.39 -0.02 0.05 16 35 H 0.06 -0.05 7.79 -2.39 -0.02 -0.07 16 36 H 0.07 -0.27 7.48 -2.39 -0.02 -0.29 16 37 H 0.08 -0.24 7.79 -2.39 -0.02 -0.26 16 38 H 0.07 -0.14 7.79 -2.39 -0.02 -0.16 16 39 H 0.07 -0.09 7.79 -2.38 -0.02 -0.11 16 40 H 0.08 -0.22 7.79 -2.39 -0.02 -0.24 16 41 H 0.07 -0.22 7.48 -2.39 -0.02 -0.23 16 42 H 0.08 -0.47 7.21 -2.39 -0.02 -0.49 16 43 H 0.07 -0.30 6.91 -2.39 -0.02 -0.32 16 44 H 0.11 -0.04 8.14 -2.39 -0.02 -0.06 16 45 H 0.11 -0.06 6.63 -2.39 -0.02 -0.07 16 46 H 0.10 -0.09 8.14 -2.38 -0.02 -0.11 16 47 H 0.17 -0.36 8.06 -2.91 -0.02 -0.39 16 48 H 0.14 -1.02 7.96 -2.38 -0.02 -1.04 16 49 H 0.39 -3.68 8.70 -74.06 -0.64 -4.33 16 50 H 0.18 -0.93 4.88 -2.91 -0.01 -0.94 16 51 H 0.10 0.20 8.14 -2.39 -0.02 0.18 16 52 H 0.08 0.05 7.67 -2.39 -0.02 0.03 16 Total: 0.00 -11.97 413.61 2.29 -9.68 By element: Atomic # 1 Polarization: -4.95 SS G_CDS: 1.01 Total: -3.93 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: 7.30 Total: 12.09 kcal Atomic # 7 Polarization: -3.54 SS G_CDS: -5.91 Total: -9.45 kcal Atomic # 8 Polarization: 2.23 SS G_CDS: -3.18 Total: -0.95 kcal Atomic # 9 Polarization: -1.05 SS G_CDS: 0.77 Total: -0.29 kcal Atomic # 14 Polarization: -9.45 SS G_CDS: 2.30 Total: -7.15 kcal Total: -11.97 2.29 -9.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14186586_17656566.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.222 kcal (2) G-P(sol) polarization free energy of solvation -11.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds