Wall clock time and date at job start Mon Mar 8 2021 05:54:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86303 * 109.46970 * 2 1 4 4 C 1.50699 * 109.47450 * 120.00117 * 2 1 3 5 5 C 1.38599 * 120.71908 * 64.99603 * 4 2 1 6 6 N 1.32276 * 119.19648 * 179.97438 * 5 4 2 7 7 C 1.32493 * 120.74072 * 0.02562 * 6 5 4 8 8 N 1.38411 * 119.21535 * 179.97438 * 7 6 5 9 9 C 1.46508 * 119.99507 * 179.97438 * 8 7 6 10 10 H 1.08999 * 112.90775 * 23.75376 * 9 8 7 11 11 C 1.53782 * 113.60939 * 154.99940 * 9 8 7 12 12 C 1.53786 * 87.07870 * 89.11971 * 11 9 8 13 13 H 1.09001 * 113.60933 * 270.79969 * 12 11 9 14 14 C 1.50699 * 113.61389 * 139.98053 * 12 11 9 15 15 C 1.38224 * 119.99661 * 119.99992 * 14 12 11 16 16 C 1.38260 * 120.02069 * 179.97438 * 15 14 12 17 17 C 1.38197 * 120.00789 * 0.28248 * 16 15 14 18 18 C 1.38339 * 119.99178 * 359.41680 * 17 16 15 19 19 Br 1.89104 * 120.01246 * 180.31735 * 18 17 16 20 20 C 1.38243 * 119.99408 * 299.97707 * 14 12 11 21 21 C 1.53775 * 113.61674 * 252.49886 * 9 8 7 22 22 N 1.32493 * 121.56516 * 0.27325 * 7 6 5 23 23 C 1.32279 * 120.73964 * 359.43881 * 22 7 6 24 24 H 0.96703 * 114.00043 * 299.99667 * 1 2 3 25 25 H 1.09004 * 109.47070 * 240.00344 * 2 1 3 26 26 H 1.48500 * 110.00045 * 178.68099 * 3 2 1 27 27 H 1.48503 * 110.00136 * 300.00327 * 3 2 1 28 28 H 1.07995 * 120.40741 * 359.96362 * 5 4 2 29 29 H 0.96995 * 120.00056 * 0.02562 * 8 7 6 30 30 H 1.09001 * 113.61935 * 334.57291 * 11 9 8 31 31 H 1.09003 * 113.61720 * 203.66466 * 11 9 8 32 32 H 1.08000 * 119.98470 * 0.02562 * 15 14 12 33 33 H 1.08002 * 119.99108 * 179.97438 * 16 15 14 34 34 H 1.08004 * 120.00055 * 179.72824 * 17 16 15 35 35 H 1.08001 * 120.00704 * 0.02562 * 20 14 12 36 36 H 1.08998 * 113.61342 * 156.34176 * 21 9 8 37 37 H 1.08996 * 113.61604 * 25.43405 * 21 9 8 38 38 H 1.07993 * 120.40097 * 180.25438 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 1.6926 -2.0633 1.4139 6 7 2.1479 -2.6567 2.5049 7 6 2.8244 -1.9725 3.4159 8 7 3.2858 -2.6251 4.5459 9 6 4.0361 -1.8852 5.5639 10 1 3.8258 -0.8158 5.5522 11 6 3.9568 -2.5134 6.9653 12 6 5.1941 -3.3408 6.5784 13 1 4.9523 -4.2898 6.0997 14 6 6.1958 -3.4869 7.6947 15 6 6.5283 -4.7434 8.1649 16 6 7.4477 -4.8780 9.1886 17 6 8.0304 -3.7558 9.7463 18 6 7.7027 -2.4983 9.2718 19 35 8.5063 -0.9628 10.0284 20 6 6.7825 -2.3641 8.2480 21 6 5.5373 -2.2177 5.5856 22 7 3.0645 -0.6773 3.2736 23 6 2.6420 -0.0249 2.2032 24 1 -0.3933 0.4417 0.7651 25 1 1.7923 -0.5138 -0.8900 26 1 3.5346 1.7704 0.0321 27 1 1.5614 2.4680 -1.2085 28 1 1.1414 -2.6262 0.6753 29 1 3.1130 -3.5722 4.6636 30 1 3.0617 -3.1148 7.1243 31 1 4.1407 -1.8045 7.7726 32 1 6.0703 -5.6204 7.7317 33 1 7.7068 -5.8601 9.5559 34 1 8.7453 -3.8609 10.5490 35 1 6.5227 -1.3822 7.8806 36 1 6.1532 -1.4279 6.0157 37 1 5.9181 -2.5803 4.6308 38 1 2.8444 1.0299 2.0909 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14189270_12175864.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:54:51 Heat of formation + Delta-G solvation = 94.381505 kcal Electronic energy + Delta-G solvation = -22757.750549 eV Core-core repulsion = 19228.522372 eV Total energy + Delta-G solvation = -3529.228177 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 362.037 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.17167 -41.21226 -39.35106 -37.94620 -35.55263 -34.73831 -33.38871 -32.51308 -31.34589 -30.23862 -26.99727 -26.71945 -26.11947 -25.53442 -23.61619 -23.15964 -22.42385 -20.28629 -19.56722 -18.53452 -18.00930 -17.94458 -16.72301 -16.59074 -16.34930 -16.13513 -15.92086 -15.74484 -15.54376 -15.06123 -14.74605 -14.54179 -14.50973 -14.27922 -14.08566 -13.61951 -13.45101 -13.14648 -12.89881 -12.36258 -12.26990 -12.16350 -11.91117 -11.87391 -11.77710 -11.64646 -11.32096 -11.23782 -11.11168 -10.52462 -10.04684 -9.85168 -9.62805 -9.11346 -4.98983 0.03848 0.10027 0.12838 0.26532 0.63368 1.32739 1.65133 1.77188 1.99846 2.56862 2.77526 3.14004 3.45461 3.53890 3.60621 3.65890 3.69684 3.73253 3.80139 3.84216 3.95796 4.05645 4.22056 4.24014 4.28639 4.41516 4.56257 4.57923 4.67871 4.75626 4.75986 4.83564 4.94648 5.00483 5.01122 5.11230 5.21307 5.32418 5.39118 5.55134 5.78801 5.83380 6.04251 6.38950 6.79475 7.25934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.554 6.554 2 C -0.047 4.047 3 Si 0.768 3.232 4 C -0.287 4.287 5 C 0.212 3.788 6 N -0.590 5.590 7 C 0.555 3.445 8 N -0.673 5.673 9 C 0.137 3.863 10 H 0.104 0.896 11 C -0.127 4.127 12 C -0.067 4.067 13 H 0.109 0.891 14 C -0.068 4.068 15 C -0.106 4.106 16 C -0.115 4.115 17 C -0.108 4.108 18 C -0.102 4.102 19 Br -0.060 7.060 20 C -0.096 4.096 21 C -0.143 4.143 22 N -0.575 5.575 23 C 0.195 3.805 24 H 0.395 0.605 25 H 0.113 0.887 26 H -0.284 1.284 27 H -0.297 1.297 28 H 0.182 0.818 29 H 0.419 0.581 30 H 0.084 0.916 31 H 0.104 0.896 32 H 0.146 0.854 33 H 0.150 0.850 34 H 0.137 0.863 35 H 0.139 0.861 36 H 0.098 0.902 37 H 0.062 0.938 38 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.608 -0.194 1.539 2.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.362 6.362 2 C -0.158 4.158 3 Si 0.674 3.326 4 C -0.296 4.296 5 C 0.045 3.955 6 N -0.312 5.312 7 C 0.198 3.802 8 N -0.309 5.309 9 C 0.031 3.969 10 H 0.122 0.878 11 C -0.165 4.165 12 C -0.085 4.085 13 H 0.127 0.873 14 C -0.069 4.069 15 C -0.124 4.124 16 C -0.133 4.133 17 C -0.128 4.128 18 C -0.181 4.181 19 Br 0.026 6.974 20 C -0.116 4.116 21 C -0.182 4.182 22 N -0.298 5.298 23 C 0.028 3.972 24 H 0.245 0.755 25 H 0.131 0.869 26 H -0.211 1.211 27 H -0.224 1.224 28 H 0.199 0.801 29 H 0.257 0.743 30 H 0.103 0.897 31 H 0.122 0.878 32 H 0.164 0.836 33 H 0.168 0.832 34 H 0.155 0.845 35 H 0.157 0.843 36 H 0.117 0.883 37 H 0.081 0.919 38 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -0.308 0.280 1.866 1.912 hybrid contribution -0.181 -0.936 -1.091 1.448 sum -0.489 -0.656 0.775 1.127 Atomic orbital electron populations 1.86482 1.17183 1.82079 1.50458 1.24793 0.85137 1.10080 0.95837 0.93980 0.77874 0.75196 0.85591 1.21769 1.08534 0.97459 1.01789 1.23138 0.89213 0.91717 0.91477 1.67991 1.17433 1.40615 1.05173 1.19601 0.87319 0.85877 0.87395 1.43867 1.57700 1.12027 1.17325 1.21827 0.90934 0.97210 0.86895 0.87810 1.23411 0.97841 0.99343 0.95877 1.21614 0.93976 0.99358 0.93575 0.87275 1.19846 0.97314 0.92628 0.97089 1.21525 0.96905 0.97720 0.96277 1.21469 0.96373 0.99165 0.96310 1.21349 1.00219 0.90996 1.00243 1.21942 1.02339 0.92605 1.01235 1.96761 1.81200 1.36194 1.83293 1.21094 0.95439 1.00106 0.94916 1.23586 0.96803 0.98598 0.99191 1.67950 1.27520 1.08315 1.25972 1.23191 0.87592 1.00218 0.86187 0.75528 0.86932 1.21138 1.22418 0.80144 0.74296 0.89739 0.87811 0.83584 0.83190 0.84478 0.84308 0.88346 0.91928 0.79433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 1.37 12.85 -148.98 -1.91 -0.55 16 2 C -0.05 0.15 2.83 71.24 0.20 0.35 16 3 Si 0.77 -3.41 29.88 68.60 2.05 -1.36 16 4 C -0.29 0.29 5.36 -19.69 -0.11 0.18 16 5 C 0.21 0.36 10.99 84.71 0.93 1.29 16 6 N -0.59 -3.05 10.46 -197.99 -2.07 -5.12 16 7 C 0.55 2.44 8.43 261.48 2.20 4.65 16 8 N -0.67 0.06 5.41 -327.92 -1.77 -1.72 16 9 C 0.14 -0.35 4.33 45.51 0.20 -0.15 16 10 H 0.10 -0.06 7.37 -2.39 -0.02 -0.08 16 11 C -0.13 0.67 7.29 31.12 0.23 0.90 16 12 C -0.07 0.31 3.86 -11.01 -0.04 0.27 16 13 H 0.11 -0.68 8.09 -2.39 -0.02 -0.70 16 14 C -0.07 0.13 5.29 -19.87 -0.11 0.02 16 15 C -0.11 0.27 9.71 22.27 0.22 0.48 16 16 C -0.11 0.21 10.05 22.27 0.22 0.44 16 17 C -0.11 -0.07 9.79 22.28 0.22 0.15 16 18 C -0.10 -0.22 6.22 22.31 0.14 -0.08 16 19 Br -0.06 -0.18 33.70 -20.37 -0.69 -0.87 16 20 C -0.10 -0.01 8.35 22.29 0.19 0.18 16 21 C -0.14 0.40 7.25 31.12 0.23 0.62 16 22 N -0.58 -2.10 9.13 -197.99 -1.81 -3.91 16 23 C 0.20 -0.10 9.92 84.71 0.84 0.74 16 24 H 0.39 -3.96 8.70 -74.06 -0.64 -4.60 16 25 H 0.11 -0.30 7.96 -2.39 -0.02 -0.32 16 26 H -0.28 -0.16 7.11 99.48 0.71 0.54 16 27 H -0.30 -1.00 7.11 99.48 0.71 -0.29 16 28 H 0.18 -0.32 8.06 -2.91 -0.02 -0.35 16 29 H 0.42 -0.97 8.82 -92.71 -0.82 -1.78 16 30 H 0.08 -0.50 8.14 -2.39 -0.02 -0.52 16 31 H 0.10 -0.57 7.72 -2.39 -0.02 -0.59 16 32 H 0.15 -0.96 8.05 -2.91 -0.02 -0.98 16 33 H 0.15 -0.91 8.06 -2.91 -0.02 -0.94 16 34 H 0.14 -0.17 8.06 -2.91 -0.02 -0.19 16 35 H 0.14 -0.25 6.66 -2.91 -0.02 -0.27 16 36 H 0.10 -0.31 6.31 -2.39 -0.02 -0.33 16 37 H 0.06 0.00 8.14 -2.39 -0.02 -0.02 16 38 H 0.19 -1.20 5.07 -2.91 -0.01 -1.21 16 Total: 0.00 -15.16 340.52 -0.95 -16.11 By element: Atomic # 1 Polarization: -12.31 SS G_CDS: -0.30 Total: -12.62 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: 5.56 Total: 10.03 kcal Atomic # 7 Polarization: -5.10 SS G_CDS: -5.65 Total: -10.75 kcal Atomic # 8 Polarization: 1.37 SS G_CDS: -1.91 Total: -0.55 kcal Atomic # 14 Polarization: -3.41 SS G_CDS: 2.05 Total: -1.36 kcal Atomic # 35 Polarization: -0.18 SS G_CDS: -0.69 Total: -0.87 kcal Total: -15.16 -0.95 -16.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14189270_12175864.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.490 kcal (2) G-P(sol) polarization free energy of solvation -15.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds